Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010629

Physical Location & Seq

Genomic Coordinates Forward (+)

33988866 .. 33995229

Gene Structure 6364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTTATCTCCTGTCTCTGGCAAAGAGCTGGGGAAGCAAGGAAGAGGGCTGGATTTATTTTCACTTGTCATGGCAAATGATAGTACCCAAGATGATGAGCTGAATATGTTCCCAACTGATGTAGGAGAAGGTGATTACAAATATCAGTACCAAATAGGTTCTACACCTTATTTTGAATCGCATGGGAATACCCAAAGTACAGAGGAGAGCAGCAGCAATGCAAATAATACTTCCAGTTACGGAGTTATACACATGCCAGATCTCCATTTACTGGAGGATGATTTAAAGCTTATGGGACAGTTTATAAAGGACTACAGAGTACCTCCTGAGATCTGTCTACTGGAGAGACCACATTCATGTAATTCTGTTTTCCTCAATTTCTTGTACAGACATCGAGTTACCCAGTCAGTTTTGACGTTTGAAGCTATCACTCAGTTTGAGAAGGGCATTCATCATGGAACAATCAACTGTTTCATCCATCTAAAGGAACTGATTGTTATGGGTGTGGATTCGAGATCTAGGATTGTTGTAACTGATGCAAATAGAGATCCAGGTGCCAGAGGTAATCAAATTCCAGGTGCTAGAGCTCCAGGTGCCAGAGGTAATCAAATTCCAGGTGCTAGAGGTAATCAAATTCCAGGTGCTAGAGCTCCAGATGTTGGAAGTGAACGAGTTCGAAAGGCTATAGTGAGTGACAGTGAACTCAAGTTTGATGAAATCACACGAGGCGTGTATGTAACTATATGTGGAAGTGCTAATAGGTGCGACAGGGTGCAGGAACATTTGAAGGAACGGATTGACGAAGCTGTTGGTCTCTGCTTGTCTGTCCATGTTCATAGACAGGTTGCCGAAACTCTTGTGCTCTGCTTGATTCTCCATGTTCATAGACAGAGTGCTGGAACTGATGTGGCAAACATAATTGTCCATCTTCAAATAAAGATTGCTGAAGCTGTTGTGCTATGCTTGTCTCTCCCAAATCCTCTGTTGTGCTTGATCCTCCTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

335

Amino Acids

36.99

Weight (kDa)

6.05

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217641 RchiOBHm_Chr7g0217651
rosa_laevigata	RLG00000002410 RLG00000002411 RLG00000002452 RLG00000019774
rosa_multiflora	Rmu_sc0000379.1_g000014 Rmu_sc0001300.1_g000006 Rmu_sc0001300.1_g000007 Rmu_sc0002029.1_g000025
rosa_roxburghii	Rroxscaffold_3G00241370
rosa_rugosa	Rorug07G0170600 Rorug07G0170600
rosa_samantha	Rh7AG310700 Rh7AG310800 Rh7AG316100 Rh7BG302300 Rh7BG302400 Rh7CG329700 Rh7DG314900
rosa_wichuraiana	Rw7G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AccB1I	GGYRCC	2 cut(s)	554, 593
AccB7I	CCANNNNNTGG	2 cut(s)	271, 659
AccI	GTMKAC	1 cut(s)	337
AclWI	GGATC	2 cut(s)	542, 988
AcsI	RAATTY	3 cut(s)	570, 609, 633
AcuI	CTGAAG	1 cut(s)	966
AfaI	GTAC	5 cut(s)	85, 149, 199, 321, 386
AfiI	CCNNNNNNNGG	4 cut(s)	17, 271, 484, 659
AgsI	TTSAA	4 cut(s)	176, 422, 787, 932
AjnI	CCWGG	5 cut(s)	550, 574, 589, 613, 637
AluBI	AGCT	8 cut(s)	28, 100, 289, 425, 587, 650, 806, 950
AluI	AGCT	8 cut(s)	28, 100, 289, 425, 587, 650, 806, 950
Alw21I	GWGCWC	3 cut(s)	589, 652, 864
Alw26I	GTCTC	4 cut(s)	19, 340, 818, 972
AlwI	GGATC	2 cut(s)	542, 988
ApeKI	GCWGC	2 cut(s)	210, 213
ApoI	RAATTY	3 cut(s)	570, 609, 633
Asp700I	GAANNNNTTC	2 cut(s)	107, 672
AsuHPI	GGTGA	1 cut(s)	143
AsuII	TTCGAA	1 cut(s)	676
BanI	GGYRCC	2 cut(s)	554, 593
BanII	GRGCYC	2 cut(s)	589, 652
BauI	CACGAG	1 cut(s)	723
Bbv12I	GWGCWC	3 cut(s)	589, 652, 864
BbvI	GCAGC	2 cut(s)	222, 225
BccI	CCATC	2 cut(s)	486, 933
BciT130I	CCWGG	5 cut(s)	552, 576, 591, 615, 639
BcoDI	GTCTC	4 cut(s)	19, 340, 818, 972
BfaI	CTAG	4 cut(s)	519, 582, 621, 645
BfmI	CTRYAG	2 cut(s)	313, 684
BglII	AGATCT	3 cut(s)	259, 330, 515
BisI	GCNGC	2 cut(s)	211, 214
BlsI	GCNGC	2 cut(s)	212, 215
Bme1390I	CCNGG	5 cut(s)	552, 576, 591, 615, 639
BmiI	GGNNCC	2 cut(s)	556, 595
BmrFI	CCNGG	5 cut(s)	552, 576, 591, 615, 639
BmrI	ACTGGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	526
BmuI	ACTGGG	1 cut(s)	397
BpmI	CTGGAG	4 cut(s)	293, 362, 573, 636
Bpu14I	TTCGAA	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	689
BsaI	GGTCTC	2 cut(s)	340, 818
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 271, 484, 659
Bse1I	ACTGG	4 cut(s)	234, 276, 345, 403
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	5 cut(s)	552, 576, 591, 615, 639
BseGI	GGATG	2 cut(s)	283, 474
BseLI	CCNNNNNNNGG	4 cut(s)	17, 271, 484, 659
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	318, 446
BseNI	ACTGG	4 cut(s)	234, 276, 345, 403
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	222, 225
BseYI	CCCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	794
BshNI	GGYRCC	2 cut(s)	554, 593
BsiHKAI	GWGCWC	3 cut(s)	589, 652, 864
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	4 cut(s)	17, 271, 484, 659
BsmAI	GTCTC	4 cut(s)	19, 340, 818, 972
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	447
Bso31I	GGTCTC	2 cut(s)	340, 818
Bsp119I	TTCGAA	1 cut(s)	676
Bsp1286I	GDGCHC	3 cut(s)	589, 652, 864
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	5 cut(s)	259, 330, 515, 547, 993
BspCNI	CTCAG	2 cut(s)	319, 445
BspLI	GGNNCC	2 cut(s)	556, 595
BspPI	GGATC	2 cut(s)	542, 988
BspT104I	TTCGAA	1 cut(s)	676
BspT107I	GGYRCC	2 cut(s)	554, 593
BspTNI	GGTCTC	2 cut(s)	340, 818
BsrDI	GCAATG	1 cut(s)	223
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	4 cut(s)	234, 276, 345, 403
BssMI	GATC	5 cut(s)	259, 330, 515, 547, 993
BssSI	CACGAG	1 cut(s)	723
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	5 cut(s)	552, 576, 591, 615, 639
Bst4CI	ACNGT	3 cut(s)	300, 470, 698
Bst6I	CTCTTC	1 cut(s)	37
BstAUI	TGTACA	1 cut(s)	384
BstBI	TTCGAA	1 cut(s)	676
BstDEI	CTNAG	2 cut(s)	327, 432
BstF5I	GGATG	2 cut(s)	283, 474
BstKTI	GATC	5 cut(s)	262, 333, 518, 550, 996
BstMAI	GTCTC	4 cut(s)	19, 340, 818, 972
BstMBI	GATC	5 cut(s)	259, 330, 515, 547, 993
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 593
BstNI	CCWGG	5 cut(s)	552, 576, 591, 615, 639
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	5 cut(s)	550, 574, 589, 613, 637
BstSFI	CTRYAG	2 cut(s)	313, 684
BstV1I	GCAGC	2 cut(s)	222, 225
BstX2I	RGATCY	4 cut(s)	259, 330, 515, 547
BstYI	RGATCY	4 cut(s)	259, 330, 515, 547
BtsCI	GGATG	2 cut(s)	283, 474
BtsIMutI	CAGTG	1 cut(s)	703
Csp6I	GTAC	5 cut(s)	84, 148, 198, 320, 385
CviAII	CATG	7 cut(s)	70, 182, 253, 357, 455, 830, 878
CviQI	GTAC	5 cut(s)	84, 148, 198, 320, 385
DdeI	CTNAG	2 cut(s)	327, 432
DpnI	GATC	5 cut(s)	261, 332, 517, 549, 995
DpnII	GATC	5 cut(s)	259, 330, 515, 547, 993
DraI	TTTAAA	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Ecl136II	GAGCTC	2 cut(s)	587, 650
Eco24I	GRGCYC	2 cut(s)	589, 652
Eco31I	GGTCTC	2 cut(s)	340, 818
Eco53kI	GAGCTC	2 cut(s)	587, 650
Eco57I	CTGAAG	1 cut(s)	966
EcoICRI	GAGCTC	2 cut(s)	587, 650
EcoRII	CCWGG	5 cut(s)	550, 574, 589, 613, 637
EcoT38I	GRGCYC	2 cut(s)	589, 652
FaeI	CATG	7 cut(s)	73, 185, 256, 360, 458, 833, 881
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	7 cut(s)	69, 181, 252, 356, 454, 829, 877
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	211, 214
FokI	GGATG	2 cut(s)	290, 461
FriOI	GRGCYC	2 cut(s)	589, 652
Fsp4HI	GCNGC	2 cut(s)	211, 214
FspBI	CTAG	4 cut(s)	519, 582, 621, 645
GluI	GCNGC	2 cut(s)	211, 214
GsaI	CCCAGC	1 cut(s)	32
GsuI	CTGGAG	4 cut(s)	293, 362, 573, 636
Hin1II	CATG	7 cut(s)	73, 185, 256, 360, 458, 833, 881
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	3 cut(s)	176, 509, 871
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	338, 668, 701
Hpy188III	TCNNGA	3 cut(s)	326, 513, 653
Hpy8I	GTNNAC	3 cut(s)	338, 668, 701
HpyAV	CCTTC	3 cut(s)	122, 436, 781
HpyCH4III	ACNGT	3 cut(s)	300, 470, 698
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	3 cut(s)	221, 539, 775
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 593
HpyF3I	CTNAG	2 cut(s)	327, 432
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	7 cut(s)	73, 185, 256, 360, 458, 833, 881
Kzo9I	GATC	5 cut(s)	259, 330, 515, 547, 993
LmnI	GCTCC	2 cut(s)	592, 655
Lsp1109I	GCAGC	2 cut(s)	222, 225
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	4 cut(s)	519, 582, 621, 645
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	5 cut(s)	236, 397, 529, 692, 736
MalI	GATC	5 cut(s)	261, 332, 517, 549, 995
MboI	GATC	5 cut(s)	259, 330, 515, 547, 993
MboII	GAAGA	2 cut(s)	54, 920
MflI	RGATCY	4 cut(s)	259, 330, 515, 547
MhlI	GDGCHC	3 cut(s)	589, 652, 864
MluCI	AATT	6 cut(s)	361, 376, 570, 609, 633, 918
MmeI	TCCRAC	1 cut(s)	640
MroXI	GAANNNNTTC	2 cut(s)	107, 672
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	355
MspR9I	CCNGG	5 cut(s)	552, 576, 591, 615, 639
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	5 cut(s)	552, 576, 591, 615, 639
MwoI	GCNNNNNNNGC	2 cut(s)	34, 593
NdeII	GATC	5 cut(s)	259, 330, 515, 547, 993
NlaIII	CATG	7 cut(s)	73, 185, 256, 360, 458, 833, 881
NlaIV	GGNNCC	2 cut(s)	556, 595
NmuCI	GTSAC	1 cut(s)	692
NspI	RCATGY	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	676
PctI	GAATGC	1 cut(s)	447
PdmI	GAANNNNTTC	2 cut(s)	107, 672
PfeI	GAWTC	3 cut(s)	176, 509, 871
PflMI	CCANNNNNTGG	2 cut(s)	271, 659
PkrI	GCNGC	2 cut(s)	212, 215
PsiI	TTATAA	1 cut(s)	305
Psp124BI	GAGCTC	2 cut(s)	589, 652
Psp6I	CCWGG	5 cut(s)	550, 574, 589, 613, 637
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	5 cut(s)	550, 574, 589, 613, 637
PspN4I	GGNNCC	2 cut(s)	556, 595
PsuI	RGATCY	4 cut(s)	259, 330, 515, 547
RsaI	GTAC	5 cut(s)	85, 149, 199, 321, 386
RsaNI	GTAC	5 cut(s)	84, 148, 198, 320, 385
RseI	CAYNNNNRTG	1 cut(s)	355
SacI	GAGCTC	2 cut(s)	589, 652
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	2 cut(s)	211, 214
Sau3AI	GATC	5 cut(s)	259, 330, 515, 547, 993
ScrFI	CCNGG	5 cut(s)	552, 576, 591, 615, 639
SduI	GDGCHC	3 cut(s)	589, 652, 864
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	2 cut(s)	313, 684
SfuI	TTCGAA	1 cut(s)	676
SmiMI	CAYNNNNRTG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	6 cut(s)	361, 376, 570, 609, 633, 918
SspMI	CTAG	4 cut(s)	519, 582, 621, 645
SstI	GAGCTC	2 cut(s)	589, 652
StyD4I	CCNGG	5 cut(s)	550, 574, 589, 613, 637
TaaI	ACNGT	3 cut(s)	300, 470, 698
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	3 cut(s)	394, 512, 676
TasI	AATT	6 cut(s)	361, 376, 570, 609, 633, 918
TatI	WGTACW	2 cut(s)	197, 384
TfiI	GAWTC	3 cut(s)	176, 509, 871
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	2 cut(s)	210, 213
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	6 cut(s)	345, 440, 463, 729, 824, 872
TspGWI	ACGGA	2 cut(s)	255, 808
TspRI	CASTG	1 cut(s)	703
Van91I	CCANNNNNTGG	2 cut(s)	271, 659
XapI	RAATTY	3 cut(s)	570, 609, 633
XceI	RCATGY	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	337
XmnI	GAANNNNTTC	2 cut(s)	107, 672
XspI	CTAG	4 cut(s)	519, 582, 621, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.