RchiOBHm_Chr7g0221721

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013278
Physical Location & Seq
Forward (+)
42779297 .. 42780995
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19839

Sequence Viewer

Length: 1014 bp
ATGATGTTCATGAGGAGCTGCACCAAAATTCCACTAGTCTCCCTAGCTTTGCTAATGCTACTTGGTGTGGAAGCAGCCACTGGTTCAGAGTTTAACTACGGCGAGGCTTTAGACAAGAGTTTGCTCTTTTTTGAGGCACAAAGATCTGGTAAACTGCCCCCAATCCAGCGAGTCAAGTGGCGCAGTGACTCAGGACTTAAGGATGGCCTAGCTCAAGGGGTGGACCTGGTTGGAGGGTATTATGATGCAGGGGATCATGTGAAATTTGGACTACCAATGGCATTCACAGTGACAATGCTTTCATGGGGAGCTATTGAGTTCAGGAAGGAGATCACAGATTTAGACCAATTAGGTCCGACGTTATGGGCCATTAGATGGGCCACTGACTATTTCATCAAAGCACATCCACAGCCTAATGTTCTTTGGGGACAGGTAGGAGATGGGAACTCTGATCACTATTGTTGGGAGCGTGCAGAGGACATGACAACTCCAAGAAATGCTTACAAAATTGATGAAAATCATCCCGGTTCAGACATTGCTGGTGAAACTGCAGCTGCCTTGGCCTCAGCTGCCATAGCTTTCAAGCCTTACAACTCTTCCTACTCCAATCTTCTCCTAGTTCATGCAAAACAGCTTTTCTCATTTGCAGATAGATTCCGAGGATTATATGATGAATCCATTGAAGATGCTAAGGACTTCTACACCTCATCGGGTTACTCCGACGAGCTACTATGGGCTGCGGCATGGCTCTACAAAGCAACCAATGATGACTACTACCTCAAGTATGTGGTGGACAACGCCGTGTATATGGGTGGAACTGGATGGTCAGTCAAAGAGTTTTCTTGGGATAACAAATATGCTGGTGTCCAAATCCTTCTCACAAAGGTTTTGTTAGAGGGAAGAGGTGGTGCATATACTTCCACACTGAAACAATATCAGGCCAAAGCAGATTACTTTGCCTGTGCTTGTCTGCAGAAAAATGATGGCTACAATGTCCATACAACTCCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
CBM49 Glyco_hydro_9

Protein Analysis

337

Amino Acids

37.58

Weight (kDa)

5.21

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 33 - 336 8.6e-114 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48930
fragaria_vesca FvH4_5g29090
malus_domestica MD16G1001700.v1.1
prunus_persica Prupe.1G346900_v2.0.a1
pyrus_communis pycom16g00390
rosa_chinensis RchiOBHm_Chr7g0221721 RchiOBHm_Chr7g0221731
rosa_laevigata RLG00000002135
rosa_multiflora Rmu_co8400965.1_g000001 Rmu_sc0003311.1_g000002
rosa_roxburghii Rroxscaffold_3G00238090
rosa_rugosa Rorug07G0203000
rosa_samantha Rh7AG343900 Rh7BG334300 Rh7CG361300 Rh7DG341700
rosa_wichuraiana Rw0G003250 Rw7G029160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 375
AciI CCGC 1 cut(s) 740
AclWI GGATC 1 cut(s) 261
AcsI RAATTY 2 cut(s) 27, 263
AfiI CCNNNNNNNGG 1 cut(s) 375
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 583, 683
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 2 cut(s) 225, 1006
AluBI AGCT 9 cut(s) 18, 47, 212, 311, 554, 569, 578, 634, 727
AluI AGCT 9 cut(s) 18, 47, 212, 311, 554, 569, 578, 634, 727
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 1 cut(s) 261
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 5 cut(s) 205, 366, 378, 561, 939
ApeKI GCWGC 6 cut(s) 18, 74, 551, 554, 569, 737
ApoI RAATTY 2 cut(s) 27, 263
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 4 cut(s) 223, 353, 366, 378
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 1 cut(s) 554
AvaII GGWCC 2 cut(s) 223, 353
BbvCI CCTCAGC 1 cut(s) 565
BbvI GCAGC 6 cut(s) 5, 86, 541, 556, 563, 724
BccI CCATC 5 cut(s) 197, 369, 434, 816, 977
BceAI ACGGC 2 cut(s) 115, 785
BciT130I CCWGG 2 cut(s) 227, 1008
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 43
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 4 cut(s) 35, 44, 209, 617
BfmI CTRYAG 2 cut(s) 549, 971
BfrI CTTAAG 1 cut(s) 197
BglII AGATCT 1 cut(s) 143
BisI GCNGC 7 cut(s) 19, 75, 552, 555, 570, 738, 741
BlsI GCNGC 7 cut(s) 20, 76, 553, 556, 571, 739, 742
Bme1390I CCNGG 3 cut(s) 227, 525, 1008
Bme18I GGWCC 2 cut(s) 223, 353
BmgT120I GGNCC 4 cut(s) 223, 353, 366, 378
BmrFI CCNGG 3 cut(s) 227, 525, 1008
BmsI GCATC 2 cut(s) 235, 676
Bpu10I CCTNAGC 2 cut(s) 565, 690
BpuEI CTTGAG 2 cut(s) 198, 764
BpuMI CCSGG 1 cut(s) 525
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 558, 658
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 2 cut(s) 85, 823
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 2 cut(s) 227, 1008
BseDI CCNNGG 2 cut(s) 558, 658
BseGI GGATG 4 cut(s) 208, 403, 520, 827
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 2 cut(s) 204, 579
BseNI ACTGG 2 cut(s) 85, 823
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 6 cut(s) 5, 86, 541, 556, 563, 724
BsgI GTGCAG 2 cut(s) 4, 492
BshFI GGCC 5 cut(s) 207, 368, 380, 563, 941
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 5 cut(s) 207, 368, 380, 563, 941
Bsp143I GATC 4 cut(s) 143, 253, 330, 451
BspACI CCGC 1 cut(s) 740
BspANI GGCC 5 cut(s) 207, 368, 380, 563, 941
BspCNI CTCAG 2 cut(s) 203, 578
BspHI TCATGA 1 cut(s) 9
BspMAI CTGCAG 2 cut(s) 553, 975
BspPI GGATC 1 cut(s) 261
BspTI CTTAAG 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 2 cut(s) 85, 823
BssECI CCNNGG 2 cut(s) 558, 658
BssMI GATC 4 cut(s) 143, 253, 330, 451
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 227, 1008
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 601, 895
BstAFI CTTAAG 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 3 cut(s) 190, 565, 690
BstF5I GGATG 4 cut(s) 208, 403, 520, 827
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 4 cut(s) 146, 256, 333, 454
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 4 cut(s) 143, 253, 330, 451
BstMWI GCNNNNNNNGC 3 cut(s) 560, 569, 575
BstNI CCWGG 2 cut(s) 227, 1008
BstSCI CCNGG 3 cut(s) 225, 523, 1006
BstSFI CTRYAG 2 cut(s) 549, 971
BstV1I GCAGC 6 cut(s) 5, 86, 541, 556, 563, 724
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 5 cut(s) 207, 368, 380, 563, 941
BtsCI GGATG 4 cut(s) 208, 403, 520, 827
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 5 cut(s) 78, 190, 294, 381, 923
Cac8I GCNNGC 1 cut(s) 471
CaiI CAGNNNCTG 1 cut(s) 80
CciI TCATGA 1 cut(s) 9
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 4 cut(s) 223, 353, 366, 378
CsiI ACCWGGT 1 cut(s) 225
CviAII CATG 6 cut(s) 10, 257, 303, 481, 623, 744
DdeI CTNAG 3 cut(s) 190, 565, 690
DpnI GATC 4 cut(s) 145, 255, 332, 453
DpnII GATC 4 cut(s) 143, 253, 330, 451
Eam1104I CTCTTC 2 cut(s) 601, 895
EarI CTCTTC 2 cut(s) 601, 895
Eco130I CCWWGG 1 cut(s) 558
Eco47I GGWCC 2 cut(s) 223, 353
EcoRII CCWGG 2 cut(s) 225, 1006
EcoT14I CCWWGG 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 6 cut(s) 13, 260, 306, 484, 626, 747
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FaqI GGGAC 1 cut(s) 441
FatI CATG 6 cut(s) 9, 256, 302, 480, 622, 743
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 7 cut(s) 19, 75, 552, 555, 570, 738, 741
FokI GGATG 4 cut(s) 215, 390, 507, 834
Fsp4HI GCNGC 7 cut(s) 19, 75, 552, 555, 570, 738, 741
FspBI CTAG 4 cut(s) 35, 44, 209, 617
GlaI GCGC 1 cut(s) 182
GluI GCNGC 7 cut(s) 19, 75, 552, 555, 570, 738, 741
HaeIII GGCC 5 cut(s) 207, 368, 380, 563, 941
HapII CCGG 1 cut(s) 525
HhaI GCGC 1 cut(s) 183
Hin1II CATG 6 cut(s) 13, 260, 306, 484, 626, 747
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 4 cut(s) 171, 188, 654, 674
HpaII CCGG 1 cut(s) 525
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 3 cut(s) 152, 223, 793
Hpy188I TCNGA 6 cut(s) 88, 357, 451, 532, 659, 721
Hpy188III TCNNGA 3 cut(s) 10, 192, 322
Hpy8I GTNNAC 3 cut(s) 152, 223, 793
Hpy99I CGWCG 2 cut(s) 361, 725
HpyAV CCTTC 2 cut(s) 319, 884
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 8 cut(s) 21, 248, 473, 551, 626, 647, 911, 973
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 569, 575
HpyF3I CTNAG 3 cut(s) 190, 565, 690
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 6 cut(s) 13, 260, 306, 484, 626, 747
HspAI GCGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 4 cut(s) 143, 253, 330, 451
LmnI GCTCC 3 cut(s) 15, 308, 466
Lsp1109I GCAGC 6 cut(s) 5, 86, 541, 556, 563, 724
LweI GCATC 2 cut(s) 235, 676
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 4 cut(s) 35, 44, 209, 617
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 3 cut(s) 185, 289, 713
MalI GATC 4 cut(s) 145, 255, 332, 453
MboI GATC 4 cut(s) 143, 253, 330, 451
MboII GAAGA 4 cut(s) 588, 602, 695, 912
MflI RGATCY 1 cut(s) 143
MluCI AATT 4 cut(s) 27, 263, 347, 507
MlyI GAGTC 2 cut(s) 180, 182
MmeI TCCRAC 3 cut(s) 211, 380, 744
MseI TTAA 2 cut(s) 93, 198
MspA1I CMGCKG 2 cut(s) 554, 569
MspCI CTTAAG 1 cut(s) 197
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 3 cut(s) 227, 525, 1008
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 2 cut(s) 227, 1008
MwoI GCNNNNNNNGC 3 cut(s) 560, 569, 575
NciI CCSGG 1 cut(s) 525
NdeII GATC 4 cut(s) 143, 253, 330, 451
NlaIII CATG 6 cut(s) 13, 260, 306, 484, 626, 747
NmuCI GTSAC 2 cut(s) 185, 289
PagI TCATGA 1 cut(s) 9
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 654, 674
PflMI CCANNNNNTGG 1 cut(s) 375
PkrI GCNGC 7 cut(s) 20, 76, 553, 556, 571, 739, 742
PleI GAGTC 2 cut(s) 179, 182
PpsI GAGTC 2 cut(s) 179, 182
Psp6I CCWGG 2 cut(s) 225, 1006
PspGI CCWGG 2 cut(s) 225, 1006
PspPI GGNCC 4 cut(s) 223, 353, 366, 378
PstI CTGCAG 2 cut(s) 553, 975
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 143
PvuII CAGCTG 2 cut(s) 554, 569
SaqAI TTAA 2 cut(s) 93, 198
SatI GCNGC 7 cut(s) 19, 75, 552, 555, 570, 738, 741
Sau3AI GATC 4 cut(s) 143, 253, 330, 451
Sau96I GGNCC 4 cut(s) 223, 353, 366, 378
SchI GAGTC 2 cut(s) 180, 182
ScrFI CCNGG 3 cut(s) 227, 525, 1008
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 2 cut(s) 235, 676
SfcI CTRYAG 2 cut(s) 549, 971
SinI GGWCC 2 cut(s) 223, 353
SmlI CTYRAG 3 cut(s) 197, 213, 779
SmoI CTYRAG 3 cut(s) 197, 213, 779
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 4 cut(s) 27, 263, 347, 507
SsiI CCGC 1 cut(s) 740
SspMI CTAG 4 cut(s) 35, 44, 209, 617
StyD4I CCNGG 3 cut(s) 225, 523, 1006
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 362
TasI AATT 4 cut(s) 27, 263, 347, 507
TauI GCSGC 1 cut(s) 743
TfiI GAWTC 2 cut(s) 654, 674
Tru1I TTAA 2 cut(s) 93, 198
Tru9I TTAA 2 cut(s) 93, 198
TscAI CASTG 5 cut(s) 85, 190, 294, 388, 930
TseFI GTSAC 2 cut(s) 185, 289
TseI GCWGC 6 cut(s) 18, 74, 551, 554, 569, 737
Tsp45I GTSAC 2 cut(s) 185, 289
TspDTI ATGAA 5 cut(s) 291, 382, 528, 611, 687
TspRI CASTG 5 cut(s) 85, 190, 294, 388, 930
Van91I CCANNNNNTGG 1 cut(s) 375
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 223, 353
XapI RAATTY 2 cut(s) 27, 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 1004
XspI CTAG 4 cut(s) 35, 44, 209, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.