Rroxscaffold_3G00238090

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
26219567 .. 26222282
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238090.1

Sequence Viewer

Length: 1617 bp
ATGATGTTCATGAGGAGCAGCACCAAAATTGCACTAGTCTCCCTAGCTTTGCTAATGCTACTTGGTGTGGAAGCAGCCACTGCTTCAGAGTTTAACTACGGCGAGGCTTTAGACAAGAGTTTGCTCTTTTTTGAGGCACAAAGATCTGGTAAACTGCCCCCAAACCAGCGAGTCAAGTGGCGCAGTGACTCAGGACTTGAGGATGGCCTAGCTCAAGGGGTGGACCTGGTTGGAGGGTATTATGATGCAGGGGATCATGTGAAATTTGGACTACCAATGGCATTCACAGTGACAATGCTTTCATGGGGAGCTATTGAGTTCAGGAAGGAGATCACAGATTTAGACCAACTAGGTCAGACATTATGGGCCATTAGATGGGGCACTGACTATTTCATCAAAGCACATCCACAGCCTAATGTTCTTTGGGGACAGGTAGGAGATGGGAACTCTGATCACTATTGTTGGGAGCGCGCAGAGGACATGACAACTCCAAGAAATGCTTACAAAATTGATGAAAATCATCCCGGTTCAGACATTGCTGGTGAAACTGCAGCTGCCTTGGCCTCAGCTGCCATAGCTTTCAAGCCTTACAACTCTTCCTACTCCAATCTCCTCCTAGTTCATGCAAAACAGCTTTTCTCATTTGCAGATAGATTCCGAGGATTATATGATGAATCCATTGAAGATGCTAAGGACTTCTACACCTCATCGGGACGAGCTACTATGGGCTGCGGCATGGCTCTCTACGAAGCAACCAATGATGACTACTACCTCAAGTATGTGGTGGACAACGCCGTGTATATGGGTGGAACTGGATGGTCAGTCAAAGAGTTTTCTTGGGATAACAAATATGCTGGTGTCCAAATCCTTCTCACAAAGGTTTTGTTAGAGGGAAGAGGTGGTGCATATACTTCCACACTGAAACAATATCAGGCCAAAGCAGATTACTTTGCCTGTGCTTGTCTGCAGAAAAATGATGGCTACAATGTCCATACAACTCCTGGGGGCTTATTATACGTGCGTGAATGGAACAACTTGCAGTATGTTACTTCTGCTTCGTTTCTTCTAGCTGTTTACTCCGATTATCTCTCTGCTGCAAATGCCAAGCTCAATTGTCCGGAAGGACAAATTCAACCTCAAGAGGTCCTCAACTTTGCAAAGTCACAGGTTGACTACATTCTTGGTAAAAACCCCAAGTCAATGAGCTACATAGTTGGGTATGGAGCAAAGTATCCGGTTCATGTACACCACAGAGATGCTTCCATTCCTTCTATATCAGTTCTTCATGCTGTGGTTGGATGTGTGCAAGGATTTGAGATATGGTATCACCGCACTGAGGGAAATCCTAATGTCGTCTATGGGGCACTTGTTGGAGGTCCTGACCAGAATGACAACTTCTCCGATGACCGCTCCAACTATGAAGGGACAGAGCCTACAATTTCTGGCACTGGTCCCCTAGTAGGCCTCTTCTCTAAGCTACAGAGTTTAAATGGTGGTTTCAATAGAGGATCACCGAAATCCCATACACCCACACCAAGAGCCTATCACCCTGAAACAACAGCACCCCCAACAAAAATCAGATACTCCTCCTATCAAATTCCTTCACTCTATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

538

Amino Acids

59.46

Weight (kDa)

5.74

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 33 - 489 2e-158 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013278)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 375
AccBSI CCGCTC 1 cut(s) 1410
AccII CGCG 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 1117
AciI CCGC 3 cut(s) 732, 1330, 1408
AclWI GGATC 2 cut(s) 261, 1516
AcsI RAATTY 3 cut(s) 263, 1128, 1596
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 1245
AfiI CCNNNNNNNGG 3 cut(s) 375, 1336, 1460
AgsI TTSAA 4 cut(s) 583, 683, 1133, 1501
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 2 cut(s) 225, 1000
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 2 cut(s) 261, 1516
AlwNI CAGNNNCTG 1 cut(s) 80
Aor13HI TCCGGA 1 cut(s) 1117
AoxI GGCC 5 cut(s) 205, 366, 561, 933, 1462
ApeKI GCWGC 7 cut(s) 18, 74, 551, 554, 569, 729, 1094
ApoI RAATTY 3 cut(s) 263, 1128, 1596
AspLEI GCGC 3 cut(s) 183, 471, 473
AspS9I GGNCC 5 cut(s) 223, 366, 1144, 1376, 1451
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 4 cut(s) 554, 1319, 1503, 1538
AvaII GGWCC 4 cut(s) 223, 1144, 1376, 1451
BaeGI GKGCMC 2 cut(s) 383, 1366
BbvCI CCTCAGC 1 cut(s) 565
BbvI GCAGC 7 cut(s) 30, 86, 541, 556, 563, 716, 1081
BccI CCATC 5 cut(s) 197, 369, 434, 810, 971
BceAI ACGGC 2 cut(s) 115, 779
BciT130I CCWGG 2 cut(s) 227, 1002
BciVI GTATCC 1 cut(s) 1242
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 43
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 8 cut(s) 35, 44, 209, 350, 617, 1067, 1457, 1615
BfmI CTRYAG 3 cut(s) 549, 965, 1478
BfuI GTATCC 1 cut(s) 1242
BglII AGATCT 1 cut(s) 143
BisI GCNGC 8 cut(s) 19, 75, 552, 555, 570, 730, 733, 1095
BlsI GCNGC 8 cut(s) 20, 76, 553, 556, 571, 731, 734, 1096
Bme1390I CCNGG 3 cut(s) 227, 525, 1002
Bme18I GGWCC 4 cut(s) 223, 1144, 1376, 1451
BmgT120I GGNCC 5 cut(s) 223, 366, 1144, 1376, 1451
BmiI GGNNCC 1 cut(s) 1453
BmrFI CCNGG 3 cut(s) 227, 525, 1002
BmsI GCATC 3 cut(s) 235, 676, 1246
Bpu10I CCTNAGC 2 cut(s) 565, 690
BpuEI CTTGAG 4 cut(s) 198, 218, 758, 1122
BpuMI CCSGG 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 1018
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 3 cut(s) 558, 658, 1001
BsaWI WCCGGW 2 cut(s) 1117, 1234
BsaXI ACNNNNNCTCC 2 cut(s) 1382, 1412
Bsc4I CCNNNNNNNGG 3 cut(s) 375, 1336, 1460
Bse1I ACTGG 2 cut(s) 817, 1453
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 516
BseAI TCCGGA 1 cut(s) 1117
BseBI CCWGG 2 cut(s) 227, 1002
BseDI CCNNGG 3 cut(s) 558, 658, 1001
BseGI GGATG 5 cut(s) 208, 403, 520, 821, 1304
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 3 cut(s) 375, 1336, 1460
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 3 cut(s) 204, 579, 1326
BseNI ACTGG 2 cut(s) 817, 1453
BsePI GCGCGC 1 cut(s) 469
BseRI GAGGAG 3 cut(s) 28, 602, 1576
BseSI GKGCMC 2 cut(s) 383, 1366
BseXI GCAGC 7 cut(s) 30, 86, 541, 556, 563, 716, 1081
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 5 cut(s) 207, 368, 563, 935, 1464
BsiSI CCGG 3 cut(s) 525, 1118, 1235
BslFI GGGAC 4 cut(s) 441, 726, 1437, 1438
BslI CCNNNNNNNGG 3 cut(s) 375, 1336, 1460
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 4 cut(s) 441, 726, 1437, 1438
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 5 cut(s) 207, 368, 563, 935, 1464
Bsp1286I GDGCHC 2 cut(s) 383, 1366
Bsp13I TCCGGA 1 cut(s) 1117
Bsp1407I TGTACA 1 cut(s) 1243
Bsp143I GATC 5 cut(s) 143, 253, 330, 451, 1508
BspACI CCGC 3 cut(s) 732, 1330, 1408
BspANI GGCC 5 cut(s) 207, 368, 563, 935, 1464
BspCNI CTCAG 3 cut(s) 203, 578, 1327
BspEI TCCGGA 1 cut(s) 1117
BspFNI CGCG 1 cut(s) 471
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 1453
BspMAI CTGCAG 2 cut(s) 553, 969
BspPI GGATC 2 cut(s) 261, 1516
BsrBI CCGCTC 1 cut(s) 1410
BsrDI GCAATG 1 cut(s) 534
BsrGI TGTACA 1 cut(s) 1243
BsrI ACTGG 2 cut(s) 817, 1453
BssECI CCNNGG 3 cut(s) 558, 658, 1001
BssHII GCGCGC 1 cut(s) 469
BssMI GATC 5 cut(s) 143, 253, 330, 451, 1508
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 227, 1002
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 3 cut(s) 601, 889, 1472
BstAPI GCANNNNNTGC 1 cut(s) 80
BstAUI TGTACA 1 cut(s) 1243
BstBAI YACGTR 1 cut(s) 1018
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 5 cut(s) 190, 565, 690, 1335, 1473
BstF5I GGATG 5 cut(s) 208, 403, 520, 821, 1304
BstFNI CGCG 1 cut(s) 471
BstHHI GCGC 3 cut(s) 183, 471, 473
BstKTI GATC 5 cut(s) 146, 256, 333, 454, 1511
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 5 cut(s) 143, 253, 330, 451, 1508
BstMWI GCNNNNNNNGC 5 cut(s) 80, 560, 569, 575, 1100
BstNI CCWGG 2 cut(s) 227, 1002
BstSCI CCNGG 3 cut(s) 225, 523, 1000
BstSFI CTRYAG 3 cut(s) 549, 965, 1478
BstSLI GKGCMC 2 cut(s) 383, 1366
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 7 cut(s) 30, 86, 541, 556, 563, 716, 1081
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuI GTATCC 1 cut(s) 1242
BsuRI GGCC 5 cut(s) 207, 368, 563, 935, 1464
BtsCI GGATG 5 cut(s) 208, 403, 520, 821, 1304
BtsI GCAGTG 2 cut(s) 78, 190
BtsIMutI CAGTG 7 cut(s) 78, 190, 294, 381, 917, 1332, 1446
Cac8I GCNNGC 1 cut(s) 471
CaiI CAGNNNCTG 1 cut(s) 80
CciI TCATGA 1 cut(s) 9
CfoI GCGC 3 cut(s) 183, 471, 473
Cfr13I GGNCC 5 cut(s) 223, 366, 1144, 1376, 1451
CsiI ACCWGGT 1 cut(s) 225
Csp6I GTAC 1 cut(s) 1244
CviAII CATG 8 cut(s) 10, 257, 303, 481, 623, 736, 1241, 1286
CviQI GTAC 1 cut(s) 1244
DdeI CTNAG 5 cut(s) 190, 565, 690, 1335, 1473
DpnI GATC 5 cut(s) 145, 255, 332, 453, 1510
DpnII GATC 5 cut(s) 143, 253, 330, 451, 1508
DraI TTTAAA 1 cut(s) 1488
Eam1104I CTCTTC 3 cut(s) 601, 889, 1472
EarI CTCTTC 3 cut(s) 601, 889, 1472
Eco130I CCWWGG 1 cut(s) 558
Eco147I AGGCCT 1 cut(s) 1464
Eco47I GGWCC 4 cut(s) 223, 1144, 1376, 1451
Eco57I CTGAAG 1 cut(s) 69
EcoO109I RGGNCCY 2 cut(s) 1144, 1376
EcoRII CCWGG 2 cut(s) 225, 1000
EcoT14I CCWWGG 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 8 cut(s) 13, 260, 306, 484, 626, 739, 1244, 1289
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FaqI GGGAC 4 cut(s) 441, 726, 1437, 1438
FatI CATG 8 cut(s) 9, 256, 302, 480, 622, 735, 1240, 1285
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 8 cut(s) 19, 75, 552, 555, 570, 730, 733, 1095
FokI GGATG 5 cut(s) 215, 390, 507, 828, 1311
Fsp4HI GCNGC 8 cut(s) 19, 75, 552, 555, 570, 730, 733, 1095
FspBI CTAG 8 cut(s) 35, 44, 209, 350, 617, 1067, 1457, 1615
GlaI GCGC 3 cut(s) 182, 470, 472
GluI GCNGC 8 cut(s) 19, 75, 552, 555, 570, 730, 733, 1095
HaeIII GGCC 5 cut(s) 207, 368, 563, 935, 1464
HapII CCGG 3 cut(s) 525, 1118, 1235
HhaI GCGC 3 cut(s) 183, 471, 473
Hin1II CATG 8 cut(s) 13, 260, 306, 484, 626, 739, 1244, 1289
Hin6I GCGC 3 cut(s) 181, 469, 471
HinP1I GCGC 3 cut(s) 181, 469, 471
HincII GTYRAC 1 cut(s) 1171
HindII GTYRAC 1 cut(s) 1171
HinfI GANTC 4 cut(s) 171, 188, 654, 674
HpaII CCGG 3 cut(s) 525, 1118, 1235
HphI GGTGA 4 cut(s) 554, 1319, 1503, 1538
Hpy166II GTNNAC 6 cut(s) 152, 223, 787, 1075, 1171, 1246
Hpy188I TCNGA 8 cut(s) 88, 357, 451, 532, 659, 1081, 1402, 1580
Hpy188III TCNNGA 7 cut(s) 10, 192, 322, 711, 1118, 1139, 1379
Hpy8I GTNNAC 6 cut(s) 152, 223, 787, 1075, 1171, 1246
HpyAV CCTTC 6 cut(s) 319, 878, 1115, 1278, 1415, 1611
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 1017
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 560, 569, 575, 1100
HpyF3I CTNAG 5 cut(s) 190, 565, 690, 1335, 1473
HpySE526I ACGT 1 cut(s) 1017
Hsp92II CATG 8 cut(s) 13, 260, 306, 484, 626, 739, 1244, 1289
HspAI GCGC 3 cut(s) 181, 469, 471
Kpn2I TCCGGA 1 cut(s) 1117
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 5 cut(s) 143, 253, 330, 451, 1508
LmnI GCTCC 5 cut(s) 15, 308, 466, 1223, 1415
Lsp1109I GCAGC 7 cut(s) 30, 86, 541, 556, 563, 716, 1081
LweI GCATC 3 cut(s) 235, 676, 1246
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 8 cut(s) 35, 44, 209, 350, 617, 1067, 1457, 1615
MaeII ACGT 1 cut(s) 1017
MaeIII GTNAC 4 cut(s) 185, 289, 1045, 1161
MalI GATC 5 cut(s) 145, 255, 332, 453, 1510
MbiI CCGCTC 1 cut(s) 1410
MboI GATC 5 cut(s) 143, 253, 330, 451, 1508
MboII GAAGA 6 cut(s) 588, 695, 906, 1055, 1274, 1459
MfeI CAATTG 1 cut(s) 1111
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 383, 1366
MluCI AATT 7 cut(s) 27, 263, 507, 1111, 1128, 1437, 1596
MlyI GAGTC 2 cut(s) 180, 182
MmeI TCCRAC 4 cut(s) 211, 1276, 1351, 1437
MroI TCCGGA 1 cut(s) 1117
MseI TTAA 2 cut(s) 93, 1487
MslI CAYNNNNRTG 1 cut(s) 1254
MspA1I CMGCKG 2 cut(s) 554, 569
MspI CCGG 3 cut(s) 525, 1118, 1235
MspR9I CCNGG 3 cut(s) 227, 525, 1002
MunI CAATTG 1 cut(s) 1111
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 2 cut(s) 227, 1002
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 5 cut(s) 80, 560, 569, 575, 1100
NciI CCSGG 1 cut(s) 525
NdeII GATC 5 cut(s) 143, 253, 330, 451, 1508
NlaIII CATG 8 cut(s) 13, 260, 306, 484, 626, 739, 1244, 1289
NlaIV GGNNCC 1 cut(s) 1453
NmuCI GTSAC 3 cut(s) 185, 289, 1161
PagI TCATGA 1 cut(s) 9
PauI GCGCGC 1 cut(s) 469
PceI AGGCCT 1 cut(s) 1464
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 654, 674
PflMI CCANNNNNTGG 1 cut(s) 375
PkrI GCNGC 8 cut(s) 20, 76, 553, 556, 571, 731, 734, 1096
PleI GAGTC 2 cut(s) 179, 182
PpsI GAGTC 2 cut(s) 179, 182
Ppu21I YACGTR 1 cut(s) 1018
PpuMI RGGWCCY 2 cut(s) 1144, 1376
Psp5II RGGWCCY 2 cut(s) 1144, 1376
Psp6I CCWGG 2 cut(s) 225, 1000
PspGI CCWGG 2 cut(s) 225, 1000
PspN4I GGNNCC 1 cut(s) 1453
PspPI GGNCC 5 cut(s) 223, 366, 1144, 1376, 1451
PspPPI RGGWCCY 2 cut(s) 1144, 1376
PstI CTGCAG 2 cut(s) 553, 969
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 143
PteI GCGCGC 1 cut(s) 469
PvuII CAGCTG 2 cut(s) 554, 569
RsaI GTAC 1 cut(s) 1245
RsaNI GTAC 1 cut(s) 1244
RseI CAYNNNNRTG 1 cut(s) 1254
SaqAI TTAA 2 cut(s) 93, 1487
SatI GCNGC 8 cut(s) 19, 75, 552, 555, 570, 730, 733, 1095
Sau3AI GATC 5 cut(s) 143, 253, 330, 451, 1508
Sau96I GGNCC 5 cut(s) 223, 366, 1144, 1376, 1451
SchI GAGTC 2 cut(s) 180, 182
ScrFI CCNGG 3 cut(s) 227, 525, 1002
SduI GDGCHC 2 cut(s) 383, 1366
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 3 cut(s) 235, 676, 1246
SfcI CTRYAG 3 cut(s) 549, 965, 1478
SinI GGWCC 4 cut(s) 223, 1144, 1376, 1451
SmiMI CAYNNNNRTG 1 cut(s) 1254
SmlI CTYRAG 4 cut(s) 197, 213, 773, 1137
SmoI CTYRAG 4 cut(s) 197, 213, 773, 1137
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 7 cut(s) 27, 263, 507, 1111, 1128, 1437, 1596
SseBI AGGCCT 1 cut(s) 1464
SsiI CCGC 3 cut(s) 732, 1330, 1408
SspMI CTAG 8 cut(s) 35, 44, 209, 350, 617, 1067, 1457, 1615
StuI AGGCCT 1 cut(s) 1464
StyD4I CCNGG 3 cut(s) 225, 523, 1000
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 1020
TasI AATT 7 cut(s) 27, 263, 507, 1111, 1128, 1437, 1596
TatI WGTACW 1 cut(s) 1243
TauI GCSGC 1 cut(s) 735
TfiI GAWTC 2 cut(s) 654, 674
Tru1I TTAA 2 cut(s) 93, 1487
Tru9I TTAA 2 cut(s) 93, 1487
TscAI CASTG 7 cut(s) 85, 190, 294, 388, 924, 1339, 1453
TseFI GTSAC 3 cut(s) 185, 289, 1161
TseI GCWGC 7 cut(s) 18, 74, 551, 554, 569, 729, 1094
Tsp45I GTSAC 3 cut(s) 185, 289, 1161
TspDTI ATGAA 8 cut(s) 291, 382, 528, 611, 687, 1229, 1274, 1434
TspRI CASTG 7 cut(s) 85, 190, 294, 388, 924, 1339, 1453
Van91I CCANNNNNTGG 1 cut(s) 375
VpaK11BI GGWCC 4 cut(s) 223, 1144, 1376, 1451
XapI RAATTY 3 cut(s) 263, 1128, 1596
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XspI CTAG 8 cut(s) 35, 44, 209, 350, 617, 1067, 1457, 1615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.