RchiOBHm_Chr7g0221731

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013278
Physical Location & Seq
Forward (+)
42781098 .. 42782250
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19840

Sequence Viewer

Length: 855 bp
ATGTCATCAGTTTCAGCCCCTTCCTGCTTTGATACTAATTTCGTATCTAAAAACCAACTTCAATTTCCAGGGGGCTTATTATACGTGCGTGAATGGAACAACTTGCAGTATGTTACTTCTGCTTCATTTCTTCTAGCTGTTTACTCCGATTATCTCTCTGCTGCAAATGCCAAGCTCAATTGTCCGGAAGGACAAATTCAACCTCAAGAGGTCCTCAACTTTGCAAAGTCACAGGTTGACTACATTCTTGGTAAAAACCCCAAGTCAATGAGCTACATAGTTGGGTATGGAGCCAAGTATCCAGTTCATGTACACCACAGAGATGCTTCCATTCCTTCTATATCAGTTCTTCATGCTGTGGTTGGATGTGTGCAAGGATTTGAGATATGGTATCATCGCACTGAGGGAAATCCTAATGTCGTCTATGGGGCACTTGTGGGAGGTCCTGACCAGAATGACAACTTCTCTGATGACCGCTCCAACTATGAAGGGACAGAGCCTACAATTTCTGGCACTGGTCCCCTAGTAGGCCTCTTCTCTAAGCTACAGAGTTTAAATGGTGATACTCCTCCTATCAAATTCCTTCACTCTATAACTAGCACATGGACTGTTGCAAAAACAAGTTATTATCGACACAAGGTGATACTAAAGAACACATCCCAGAAACCGATAACAAATGTGAAGCTGGTGCTTGGAAACCTCGAAGGGCCGTTATGGGGTCTCTCTCCAACTCCACAGAAGAACACATATGAGCTTCCTCAATGGCAGAAAGTCCTGCAGCCTGGCGCTAAGTGCACTTTTGTTTACGTTCAAGGTGGCCCTCAGGCAAAGATATTTATTCAAAGCTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
CBM49 Glyco_hydro_9

Protein Analysis

284

Amino Acids

31.36

Weight (kDa)

8.72

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 17 - 178 6.3e-48 Glycosyl hydrolase family 9
CBM49 PF09478 192 - 271 2.7e-23 Carbohydrate binding domain CBM49
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48930
fragaria_vesca FvH4_5g29090
malus_domestica MD16G1001700.v1.1
prunus_persica Prupe.1G346900_v2.0.a1
pyrus_communis pycom16g00390
rosa_chinensis RchiOBHm_Chr7g0221721 RchiOBHm_Chr7g0221731
rosa_laevigata RLG00000002135
rosa_multiflora Rmu_co8400965.1_g000001 Rmu_sc0003311.1_g000002
rosa_roxburghii Rroxscaffold_3G00238090
rosa_rugosa Rorug07G0203000
rosa_samantha Rh7AG343900 Rh7BG334300 Rh7CG361300 Rh7DG341700
rosa_wichuraiana Rw0G003250 Rw7G029160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 477
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 1 cut(s) 475
AcsI RAATTY 2 cut(s) 195, 578
AdeI CACNNNGTG 1 cut(s) 640
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 527, 716
AgsI TTSAA 4 cut(s) 62, 200, 812, 842
AjnI CCWGG 2 cut(s) 67, 781
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 7 cut(s) 137, 175, 273, 544, 685, 754, 846
AluI AGCT 7 cut(s) 137, 175, 273, 544, 685, 754, 846
Alw21I GWGCWC 1 cut(s) 797
Alw26I GTCTC 1 cut(s) 725
Alw44I GTGCAC 1 cut(s) 793
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 3 cut(s) 529, 707, 817
ApaLI GTGCAC 1 cut(s) 793
ApeKI GCWGC 2 cut(s) 161, 778
ApoI RAATTY 2 cut(s) 195, 578
AspLEI GCGC 1 cut(s) 788
AspS9I GGNCC 5 cut(s) 211, 443, 518, 707, 818
AsuHPI GGTGA 2 cut(s) 572, 652
AvaII GGWCC 3 cut(s) 211, 443, 518
AxyI CCTNAGG 1 cut(s) 822
BaeGI GKGCMC 2 cut(s) 433, 797
Bbv12I GWGCWC 1 cut(s) 797
BbvI GCAGC 2 cut(s) 148, 790
BceAI ACGGC 1 cut(s) 694
BciT130I CCWGG 2 cut(s) 69, 783
BciVI GTATCC 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 725
BfaI CTAG 3 cut(s) 134, 524, 597
BfmI CTRYAG 2 cut(s) 545, 776
BfoI RGCGCY 1 cut(s) 789
BfuI GTATCC 1 cut(s) 309
BisI GCNGC 2 cut(s) 162, 779
BlsI GCNGC 2 cut(s) 163, 780
Bme1390I CCNGG 2 cut(s) 69, 783
Bme18I GGWCC 3 cut(s) 211, 443, 518
BmgT120I GGNCC 5 cut(s) 211, 443, 518, 707, 818
BmiI GGNNCC 2 cut(s) 292, 520
BmrFI CCNGG 2 cut(s) 69, 783
BmsI GCATC 1 cut(s) 313
BpuEI CTTGAG 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 85
BsaI GGTCTC 1 cut(s) 725
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 716
Bse1I ACTGG 2 cut(s) 302, 520
Bse21I CCTNAGG 1 cut(s) 822
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 2 cut(s) 69, 783
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 371, 656
BseLI CCNNNNNNNGG 2 cut(s) 527, 716
BseMII CTCAG 2 cut(s) 393, 836
BseNI ACTGG 2 cut(s) 302, 520
BseRI GAGGAG 1 cut(s) 558
BseSI GKGCMC 2 cut(s) 433, 797
BseXI GCAGC 2 cut(s) 148, 790
BshFI GGCC 3 cut(s) 531, 709, 819
BsiHKAI GWGCWC 1 cut(s) 797
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 2 cut(s) 504, 505
BslI CCNNNNNNNGG 2 cut(s) 527, 716
BsmAI GTCTC 1 cut(s) 725
BsmFI GGGAC 2 cut(s) 504, 505
BsnI GGCC 3 cut(s) 531, 709, 819
Bso31I GGTCTC 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 433, 797
Bsp13I TCCGGA 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 310
BspACI CCGC 1 cut(s) 475
BspANI GGCC 3 cut(s) 531, 709, 819
BspCNI CTCAG 2 cut(s) 394, 835
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 292, 520
BspMAI CTGCAG 1 cut(s) 780
BspTNI GGTCTC 1 cut(s) 725
BsrBI CCGCTC 1 cut(s) 477
BsrGI TGTACA 1 cut(s) 310
BsrI ACTGG 2 cut(s) 302, 520
BssECI CCNNGG 1 cut(s) 68
Bst2UI CCWGG 2 cut(s) 69, 783
Bst4CI ACNGT 1 cut(s) 610
Bst6I CTCTTC 1 cut(s) 539
BstAUI TGTACA 1 cut(s) 310
BstBAI YACGTR 1 cut(s) 85
BstDEI CTNAG 4 cut(s) 402, 540, 789, 822
BstF5I GGATG 2 cut(s) 371, 656
BstH2I RGCGCY 1 cut(s) 789
BstHHI GCGC 1 cut(s) 788
BstMAI GTCTC 1 cut(s) 725
BstMWI GCNNNNNNNGC 2 cut(s) 167, 792
BstNI CCWGG 2 cut(s) 69, 783
BstSCI CCNGG 2 cut(s) 67, 781
BstSFI CTRYAG 2 cut(s) 545, 776
BstSLI GKGCMC 2 cut(s) 433, 797
BstV1I GCAGC 2 cut(s) 148, 790
Bsu36I CCTNAGG 1 cut(s) 822
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 3 cut(s) 531, 709, 819
BtgZI GCGATG 1 cut(s) 380
BtsCI GGATG 2 cut(s) 371, 656
BtsIMutI CAGTG 2 cut(s) 399, 513
CfoI GCGC 1 cut(s) 788
Cfr13I GGNCC 5 cut(s) 211, 443, 518, 707, 818
Csp6I GTAC 1 cut(s) 311
CviAII CATG 3 cut(s) 308, 353, 603
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 4 cut(s) 402, 540, 789, 822
DraI TTTAAA 1 cut(s) 555
DraIII CACNNNGTG 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Eco147I AGGCCT 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 725
Eco47I GGWCC 3 cut(s) 211, 443, 518
Eco81I CCTNAGG 1 cut(s) 822
EcoO109I RGGNCCY 2 cut(s) 211, 443
EcoRII CCWGG 2 cut(s) 67, 781
FaeI CATG 3 cut(s) 311, 356, 606
FaqI GGGAC 2 cut(s) 504, 505
FatI CATG 3 cut(s) 307, 352, 602
FauNDI CATATG 1 cut(s) 748
Fnu4HI GCNGC 2 cut(s) 162, 779
FokI GGATG 2 cut(s) 378, 643
Fsp4HI GCNGC 2 cut(s) 162, 779
FspBI CTAG 3 cut(s) 134, 524, 597
GlaI GCGC 1 cut(s) 787
GluI GCNGC 2 cut(s) 162, 779
HaeII RGCGCY 1 cut(s) 789
HaeIII GGCC 3 cut(s) 531, 709, 819
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 788
Hin1II CATG 3 cut(s) 311, 356, 606
Hin6I GCGC 1 cut(s) 786
HinP1I GCGC 1 cut(s) 786
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 572, 652
Hpy166II GTNNAC 5 cut(s) 142, 238, 313, 795, 805
Hpy188I TCNGA 2 cut(s) 148, 469
Hpy188III TCNNGA 3 cut(s) 185, 206, 446
Hpy8I GTNNAC 5 cut(s) 142, 238, 313, 795, 805
HpyAV CCTTC 6 cut(s) 30, 182, 345, 482, 593, 698
HpyCH4III ACNGT 1 cut(s) 610
HpyCH4IV ACGT 2 cut(s) 84, 807
HpyCH4V TGCA 7 cut(s) 106, 164, 224, 373, 614, 778, 795
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 792
HpyF3I CTNAG 4 cut(s) 402, 540, 789, 822
HpySE526I ACGT 2 cut(s) 84, 807
Hsp92II CATG 3 cut(s) 311, 356, 606
HspAI GCGC 1 cut(s) 786
Kpn2I TCCGGA 1 cut(s) 184
LmnI GCTCC 2 cut(s) 290, 482
Lsp1109I GCAGC 2 cut(s) 148, 790
LweI GCATC 1 cut(s) 313
MaeI CTAG 3 cut(s) 134, 524, 597
MaeII ACGT 2 cut(s) 84, 807
MaeIII GTNAC 2 cut(s) 112, 228
MbiI CCGCTC 1 cut(s) 477
MboII GAAGA 4 cut(s) 122, 341, 526, 751
MfeI CAATTG 2 cut(s) 178, 850
MhlI GDGCHC 2 cut(s) 433, 797
MluCI AATT 7 cut(s) 37, 62, 178, 195, 504, 578, 850
MmeI TCCRAC 3 cut(s) 343, 504, 752
MroI TCCGGA 1 cut(s) 184
MseI TTAA 1 cut(s) 554
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 69, 783
MunI CAATTG 2 cut(s) 178, 850
MvaI CCWGG 2 cut(s) 69, 783
MwoI GCNNNNNNNGC 2 cut(s) 167, 792
NdeI CATATG 1 cut(s) 748
NlaIII CATG 3 cut(s) 311, 356, 606
NlaIV GGNNCC 2 cut(s) 292, 520
NmuCI GTSAC 1 cut(s) 228
PceI AGGCCT 1 cut(s) 531
PkrI GCNGC 2 cut(s) 163, 780
Ppu21I YACGTR 1 cut(s) 85
PpuMI RGGWCCY 2 cut(s) 211, 443
Psp5II RGGWCCY 2 cut(s) 211, 443
Psp6I CCWGG 2 cut(s) 67, 781
PspGI CCWGG 2 cut(s) 67, 781
PspN4I GGNNCC 2 cut(s) 292, 520
PspPI GGNCC 5 cut(s) 211, 443, 518, 707, 818
PspPPI RGGWCCY 2 cut(s) 211, 443
PstI CTGCAG 1 cut(s) 780
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 1 cut(s) 554
SatI GCNGC 2 cut(s) 162, 779
Sau96I GGNCC 5 cut(s) 211, 443, 518, 707, 818
ScrFI CCNGG 2 cut(s) 69, 783
SduI GDGCHC 2 cut(s) 433, 797
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 2 cut(s) 545, 776
SinI GGWCC 3 cut(s) 211, 443, 518
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 7 cut(s) 37, 62, 178, 195, 504, 578, 850
SseBI AGGCCT 1 cut(s) 531
SsiI CCGC 1 cut(s) 475
SspMI CTAG 3 cut(s) 134, 524, 597
StuI AGGCCT 1 cut(s) 531
StyD4I CCNGG 2 cut(s) 67, 781
TaaI ACNGT 1 cut(s) 610
TaiI ACGT 2 cut(s) 87, 810
TaqI TCGA 2 cut(s) 631, 702
TasI AATT 7 cut(s) 37, 62, 178, 195, 504, 578, 850
TatI WGTACW 1 cut(s) 310
Tru1I TTAA 1 cut(s) 554
Tru9I TTAA 1 cut(s) 554
TscAI CASTG 2 cut(s) 406, 520
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 2 cut(s) 161, 778
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 4 cut(s) 114, 296, 341, 501
TspRI CASTG 2 cut(s) 406, 520
VneI GTGCAC 1 cut(s) 793
VpaK11BI GGWCC 3 cut(s) 211, 443, 518
XapI RAATTY 2 cut(s) 195, 578
XspI CTAG 3 cut(s) 134, 524, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.