RchiOBHm_Chr7g0235241

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008785
Physical Location & Seq
Forward (+)
59980182 .. 59988028
7847 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21084

Sequence Viewer

Length: 2898 bp
ATGCCTCACAGAACGACTTACTTCTTCCCGAGGCAATTTCCGGATCGCCGCTTCGATTCGTGCTCTTCTGCCAAACAGTTGGTACCGCAAGATAGTCATCTTCATCATCATCTCGAGAAACAGAGCAGCGGCAGCAATGAAAACGACGTCGTCGCCAGCATCATTGATCACCACCAAAAGTCTAACAACAACAACAACCACAACAGCACCAAATTCACAGCTGTATCCGATCAGTATTTCACGGGCGGCCGAAACACCACCACAAGTAGTACCAGCAGCGGCGCCAGCAAGCAATCCACCAAGAAGCAACAGCTGGCTTCCATTTGCGACTGGTTCGTCACAGAGAAAAAGCACAACAACAAGAGGAGAACCAAACCCAGCCACGTGAGGAGGAGCATGAGATCGTCGCTGCCGTCGTTCTCCTGCCACGTACCAGACGAGGATCGCGAGCTTCTGCTTCGGCCAGAAGCCGTCGATGTGTCGTCAGCGGTGCCGGATACGAAGTCGTTCAAGGTCGACCGGAGCGTTGACAGGAACTTTGACCGGCAGGTGTCGCTGCCGAGGCTCTCAAGCGGGAGTAGCTACGCCGGGAGCTTGTTCTCCGGGACGACGACGCTGGACGGGAACTTCTCCGGCGACGTCAAGGACTCGTCGGCGACGACGAGGCCGGTGGAGGAAGAGGAGGAGGAGGAGGAGGTGGTGGGAGTGGGAGTCGAGGCGAGTAGGGATAGCTCGGCGCAGAGGTCCAAGGAGAGCTACTATTTGCAGCTTCTATTGGCCAAGAGGATTAGCGCTCAAGCTACTCTCGGTAGTGAGACGTTGCTTTTGCGCCACACTGGCTTTGAGGTTACCGATGTTGAGACGGTGTCGTATCGCCTCTGGGTTAGTGGCTGCTTGTCTTACAATGAGAAAATATCGGATGGTTTCTACAATATTTTGGGGATGAATCCGTATCTATGGGTGATGTGCAATGATGTGGAAGAAGGTAAACGTCTACCATCGCTGATGTCACTTAGAGCAATTAAACCCGCAGAGACATCAATGGAGGTGGTTCTTGTTGACAAACATGGGGACTCTCGCCTCAAGGAACTTCAAGATAAGGCACAAGAACTTTATTGTGCTTCAGAGAATGCCTTGGTGTTGGTGGAGAAACTTGGCAAGCTTGTCGCCATCTACATGGGGGGTACTTATCCTGTGGAGCAAGGAGATCTCCACATGCGCTGGAAAGTGGTTAGCAAGAGATTGAGGGAATTCCAAAAGTGTATTGTGCTCCCCATTGGCAGCCTATCAATGGGGCTCTGCAGGCATCGTGCTATTCTCTTCAAGAAATTGGCAGACTACATAGGTTTACCTTGCCGGATAGCTCGTGGTTGCAGGTATTGTGTGGCAGATCATAGGTCTTCTTGTCTTGTTAAAATTGAAGACAGGCAGCTTGTGAGGGAATATGTGGTTGATCTAGTTGGGGAACCCGGAAATGTCCATGGCCCAGATTCCTCGATCAATGGATCTCTGTCTTCAATATCTTCACCATTTCAAATTTCTCAGCAAAAAGAGTTCCAACGAATTTATAGGGATAGTGGATTATGTTCCCAAATTATAAACTCAAAGCACACTCGTCCACCTCCTGAAGATCCTCTGTATCCAGGCTACAGAGAGGAAAGCCAGGTCCTGAAAGATAGTAGTTTGCTTCCAGTTGATCAAACTAGATTTGGGATGGAAGCTTCTGTAATGCCTTTGGACTTGAAAGCGAATGCGGAGCATTGCCTTCTCCAGACACCAATGCCACCTTGTGTACAAGGTGATATTTCCGAAGCTGTTGATGTGGGAGCTGCCATTGCATCATTAGAGGAATGTGCTAGACTAGGTGAAGAAAGTATTATTGTACAGCAAGCTTACCGGAAGGAGATTGTTGTGTCAAGAAGTGGAGTAATATGTAGCAGTGACAAGTCCAGTCAATCAGATCTAGAGGAGGTTGACAGTAAGCTTGAGATTCAAAGCCGATTTTCTGCTGTCACTGTTCCTAGGTACTTGAATCTCGAACCATCTCTTGCCATGGACTGGCTTGAGATCGCATGGGATGAGTTACATATCAAAGAGCGCGTTGGTGCTGGCTCATTTGGAACTGTGCATCGTGCTGAATGGCATGGATCGGATGTAGCTGTCAAGGTTTTAACTGTTCAAGATTTCCATGATGATCAGTTGAGGGAATTTTTGCGCGAGGTTGCAATTATGAAACGTGTCCGCCATCCCAATGTAGTTCTGTTCATGGGTGCAGTTACAAAGCGTCCACATCTCTCAATAGTGACAGAGTATTTACCTAGGGGTAGTCTATATCGACTCATACACAGGCCAGCTTCTGGGGAACTTCTGGATCATAGGCGGCGGCTGCGCATGGCATTAGATGTGGCCAAGGGGATCAATTACCTCCATTGTCTTAGCCCTCCTATTGTCCATTGGGATCTTAAATCTCCAAATTTATTGGTTGATAAAAATTGGACAGCGAAGGTATGCGATTTTGGGTTGTCCAGGTTCAAAGCAAACACTTTCATATCATCGAAATCTGTTGCTGGAACACCTGAGTGGATGGCTCCAGAGTTCCTTCGCGGAGAGCCCTCAAATGAGAAGTCTGATGTCTACAGTTTCGGAGTAATCCTTTGGGAACTTGTGACCATGCAACAACCTTGGCTTGGGCTTAGTCCTGCGCAAGTAGTTGGCGCTGTTGCTTTCCAGAATAGAAGGCTTGCTATACCAGCAAATACTCCCCCAATGTTGGCTTCTCTTATGGAATCCTGCTGGGCTGATGACCCTGCTCAGCGCCCAACATTTAAAAGTATAGTGGAGTCGCTGAAGAAGTTGCTAAAATCTCCTCTGCAGTGGGCACAGGTGAGTGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

965

Amino Acids

108.11

Weight (kDa)

7.16

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 286 - 493 6e-75 EDR1/CTR1/ARMC3, peptidase-like
PK_Tyr_Ser-Thr PF07714 695 - 949 4.5e-65 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 696 - 947 2e-51 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1598
AarI CACCTGC 1 cut(s) 538
AasI GACNNNNNNGTC 1 cut(s) 335
AatII GACGTC 2 cut(s) 150, 642
Acc16I TGCGCA 2 cut(s) 2390, 2703
Acc36I ACCTGC 2 cut(s) 538, 1365
Acc65I GGTACC 1 cut(s) 82
AccB1I GGYRCC 3 cut(s) 82, 281, 490
AccB7I CCANNNNNTGG 2 cut(s) 2058, 2357
AccI GTMKAC 3 cut(s) 516, 994, 2634
AccII CGCG 4 cut(s) 447, 2100, 2217, 2604
AccIII TCCGGA 1 cut(s) 40
AclWI GGATC 8 cut(s) 51, 450, 1513, 1625, 2155, 2379, 2423, 2466
AcoI YGGCCR 4 cut(s) 247, 461, 777, 2406
AcsI RAATTY 6 cut(s) 212, 1250, 1536, 1563, 2207, 2473
AcuI CTGAAG 3 cut(s) 1107, 1647, 2867
AcvI CACGTG 1 cut(s) 385
AcyI GRCGYC 3 cut(s) 147, 282, 639
AdeI CACNNNGTG 1 cut(s) 1790
AfaI GTAC 7 cut(s) 84, 271, 432, 1186, 1794, 1884, 2027
AfeI AGCGCT 1 cut(s) 793
AfiI CCNNNNNNNGG 5 cut(s) 1291, 2058, 2357, 2687, 2770
AflIII ACRYGT 1 cut(s) 2236
AjnI CCWGG 3 cut(s) 1642, 1662, 2525
AjuI GAANNNNNNNTTGG 2 cut(s) 2758, 2790
AleI CACNNNNGTG 1 cut(s) 2578
Alw21I GWGCWC 2 cut(s) 65, 1272
Alw26I GTCTC 3 cut(s) 809, 854, 1028
AlwI GGATC 8 cut(s) 51, 450, 1513, 1625, 2155, 2379, 2423, 2466
AlwNI CAGNNNCTG 2 cut(s) 1669, 2357
Ama87I CYCGRG 2 cut(s) 28, 113
Aor13HI TCCGGA 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 793
AoxI GGCC 7 cut(s) 247, 461, 665, 777, 1483, 2348, 2406
ApoI RAATTY 6 cut(s) 212, 1250, 1536, 1563, 2207, 2473
ArsI GACNNNNNNTTYG 6 cut(s) 521, 553, 808, 840, 2609, 2641
Asp700I GAANNNNTTC 1 cut(s) 506
Asp718I GGTACC 1 cut(s) 82
AspA2I CCTAGG 2 cut(s) 2021, 2318
AspS9I GGNCC 3 cut(s) 744, 1484, 1666
AsuC2I CCSGG 3 cut(s) 589, 604, 1470
AsuHPI GGTGA 6 cut(s) 161, 973, 1518, 1811, 1877, 2896
AvaI CYCGRG 2 cut(s) 28, 113
AvaII GGWCC 2 cut(s) 744, 1666
AvrII CCTAGG 2 cut(s) 2021, 2318
BaeGI GKGCMC 1 cut(s) 2881
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BalI TGGCCA 2 cut(s) 779, 2408
BanI GGYRCC 3 cut(s) 82, 281, 490
BanII GRGCYC 2 cut(s) 1299, 2613
BauI CACGAG 1 cut(s) 1365
BbrPI CACGTG 1 cut(s) 385
BbsI GAAGAC 3 cut(s) 1392, 1428, 1506
Bbv12I GWGCWC 2 cut(s) 65, 1272
BccI CCATC 7 cut(s) 914, 1006, 1178, 1708, 2050, 2253, 2578
BceAI ACGGC 2 cut(s) 397, 455
BcgI CGANNNNNNTGC 2 cut(s) 1147, 1181
BciT130I CCWGG 3 cut(s) 1644, 1664, 2527
BciVI GTATCC 3 cut(s) 235, 490, 1650
BclI TGATCA 3 cut(s) 166, 1696, 2194
BcnI CCSGG 3 cut(s) 589, 604, 1470
BcoDI GTCTC 3 cut(s) 809, 854, 1028
BfaI CTAG 7 cut(s) 1457, 1704, 1857, 1862, 1964, 2022, 2319
BfmI CTRYAG 4 cut(s) 1300, 1648, 2635, 2870
BfoI RGCGCY 4 cut(s) 285, 795, 2718, 2818
BfuAI ACCTGC 2 cut(s) 538, 1365
BfuI GTATCC 3 cut(s) 235, 490, 1650
BglI GCCNNNNNGGC 1 cut(s) 837
BglII AGATCT 2 cut(s) 1207, 1960
BlnI CCTAGG 2 cut(s) 2021, 2318
BlpI GCTNAGC 1 cut(s) 2811
Bme1390I CCNGG 6 cut(s) 589, 604, 1470, 1644, 1664, 2527
Bme18I GGWCC 2 cut(s) 744, 1666
BmeT110I CYCGRG 2 cut(s) 28, 113
BmgT120I GGNCC 3 cut(s) 744, 1484, 1666
BmiI GGNNCC 5 cut(s) 84, 283, 492, 1467, 2589
BmrFI CCNGG 6 cut(s) 589, 604, 1470, 1644, 1664, 2527
BmsI GCATC 4 cut(s) 168, 1315, 1847, 2137
BpiI GAAGAC 3 cut(s) 1392, 1428, 1506
BpmI CTGGAG 2 cut(s) 1754, 2574
Bpu1102I GCTNAGC 1 cut(s) 2811
BpuEI CTTGAG 5 cut(s) 553, 780, 1067, 2006, 2084
BpuMI CCSGG 3 cut(s) 589, 604, 1470
BsaAI YACGTR 2 cut(s) 385, 430
BsaBI GATNNNNATC 1 cut(s) 96
BsaHI GRCGYC 3 cut(s) 147, 282, 639
BsaWI WCCGGW 3 cut(s) 40, 519, 1896
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 5 cut(s) 1291, 2058, 2357, 2687, 2770
Bse118I RCCGGY 2 cut(s) 543, 667
Bse1I ACTGG 5 cut(s) 335, 841, 1691, 1950, 2063
Bse3DI GCAATG 4 cut(s) 142, 976, 1759, 1833
Bse8I GATNNNNATC 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 3 cut(s) 1644, 1664, 2527
BseGI GGATG 7 cut(s) 925, 948, 1719, 2083, 2158, 2245, 2589
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 5 cut(s) 1291, 2058, 2357, 2687, 2770
BseMI GCAATG 4 cut(s) 142, 976, 1759, 1833
BseMII CTCAG 3 cut(s) 1556, 2568, 2825
BseNI ACTGG 5 cut(s) 335, 841, 1691, 1950, 2063
BseSI GKGCMC 1 cut(s) 2881
BseX3I CGGCCG 1 cut(s) 247
BseYI CCCAGC 2 cut(s) 377, 2793
BsgI GTGCAG 1 cut(s) 2292
Bsh1236I CGCG 4 cut(s) 447, 2100, 2217, 2604
Bsh1285I CGRYCG 2 cut(s) 250, 520
BshFI GGCC 7 cut(s) 249, 463, 667, 779, 1485, 2350, 2408
BshNI GGYRCC 3 cut(s) 82, 281, 490
BsiEI CGRYCG 2 cut(s) 250, 520
BsiHKAI GWGCWC 2 cut(s) 65, 1272
BsiHKCI CYCGRG 2 cut(s) 28, 113
BslFI GGGAC 2 cut(s) 619, 1085
BslI CCNNNNNNNGG 5 cut(s) 1291, 2058, 2357, 2687, 2770
BsmAI GTCTC 3 cut(s) 809, 854, 1028
BsmBI CGTCTC 2 cut(s) 809, 854
BsmFI GGGAC 2 cut(s) 619, 1085
BsmI GAATGC 2 cut(s) 1135, 1756
BsnI GGCC 7 cut(s) 249, 463, 667, 779, 1485, 2350, 2408
BsoBI CYCGRG 2 cut(s) 28, 113
Bsp1286I GDGCHC 5 cut(s) 65, 1272, 1299, 2613, 2881
Bsp13I TCCGGA 1 cut(s) 40
Bsp1407I TGTACA 2 cut(s) 1792, 1882
Bsp1720I GCTNAGC 1 cut(s) 2811
Bsp19I CCATGG 2 cut(s) 1480, 2052
Bsp68I TCGCGA 1 cut(s) 447
BspANI GGCC 7 cut(s) 249, 463, 667, 779, 1485, 2350, 2408
BspCNI CTCAG 3 cut(s) 1555, 2569, 2824
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 4 cut(s) 447, 2100, 2217, 2604
BspLI GGNNCC 5 cut(s) 84, 283, 492, 1467, 2589
BspMAI CTGCAG 2 cut(s) 1304, 2874
BspMI ACCTGC 2 cut(s) 538, 1365
BspPI GGATC 8 cut(s) 51, 450, 1513, 1625, 2155, 2379, 2423, 2466
BspQI GCTCTTC 1 cut(s) 70
BspT107I GGYRCC 3 cut(s) 82, 281, 490
BsrDI GCAATG 4 cut(s) 142, 976, 1759, 1833
BsrFI RCCGGY 2 cut(s) 543, 667
BsrGI TGTACA 2 cut(s) 1792, 1882
BsrI ACTGG 5 cut(s) 335, 841, 1691, 1950, 2063
BssAI RCCGGY 2 cut(s) 543, 667
BssNI GRCGYC 3 cut(s) 147, 282, 639
BssSI CACGAG 1 cut(s) 1365
BssT1I CCWWGG 8 cut(s) 747, 1134, 1480, 2021, 2052, 2318, 2409, 2681
Bst2BI CACGAG 1 cut(s) 1365
Bst2UI CCWGG 3 cut(s) 1644, 1664, 2527
Bst4CI ACNGT 7 cut(s) 78, 865, 1979, 2017, 2125, 2176, 2639
Bst6I CTCTTC 3 cut(s) 70, 672, 1325
BstACI GRCGYC 3 cut(s) 147, 282, 639
BstAUI TGTACA 2 cut(s) 1792, 1882
BstBAI YACGTR 2 cut(s) 385, 430
BstDEI CTNAG 6 cut(s) 1013, 1542, 2435, 2577, 2693, 2811
BstDSI CCRYGG 2 cut(s) 1480, 2052
BstEII GGTNACC 1 cut(s) 847
BstF5I GGATG 7 cut(s) 925, 948, 1719, 2083, 2158, 2245, 2589
BstFNI CGCG 4 cut(s) 447, 2100, 2217, 2604
BstH2I RGCGCY 4 cut(s) 285, 795, 2718, 2818
BstMAI GTCTC 3 cut(s) 809, 854, 1028
BstMCI CGRYCG 2 cut(s) 250, 520
BstNI CCWGG 3 cut(s) 1644, 1664, 2527
BstNSI RCATGY 1 cut(s) 1219
BstPI GGTNACC 1 cut(s) 847
BstSCI CCNGG 6 cut(s) 587, 602, 1468, 1642, 1662, 2525
BstSFI CTRYAG 4 cut(s) 1300, 1648, 2635, 2870
BstSLI GKGCMC 1 cut(s) 2881
BstUI CGCG 4 cut(s) 447, 2100, 2217, 2604
BstV2I GAAGAC 3 cut(s) 1392, 1428, 1506
BstX2I RGATCY 5 cut(s) 1207, 1505, 1630, 1960, 2458
BstXI CCANNNNNNTGG 2 cut(s) 79, 1177
BstYI RGATCY 5 cut(s) 1207, 1505, 1630, 1960, 2458
BstZI CGGCCG 1 cut(s) 247
BsuI GTATCC 3 cut(s) 235, 490, 1650
BsuRI GGCC 7 cut(s) 249, 463, 667, 779, 1485, 2350, 2408
BtgI CCRYGG 2 cut(s) 1480, 2052
BtgZI GCGATG 1 cut(s) 984
BtsCI GGATG 7 cut(s) 925, 948, 1719, 2083, 2158, 2245, 2589
BtsI GCAGTG 2 cut(s) 1945, 2879
BtsIMutI CAGTG 4 cut(s) 834, 1945, 2013, 2879
BtuMI TCGCGA 1 cut(s) 447
BveI ACCTGC 2 cut(s) 538, 1365
CaiI CAGNNNCTG 2 cut(s) 1669, 2357
Cfr10I RCCGGY 2 cut(s) 543, 667
Cfr13I GGNCC 3 cut(s) 744, 1484, 1666
CseI GACGC 2 cut(s) 622, 2273
Csp6I GTAC 7 cut(s) 83, 270, 431, 1185, 1793, 1883, 2026
CspCI CAANNNNNGTGG 2 cut(s) 1029, 1064
CviQI GTAC 7 cut(s) 83, 270, 431, 1185, 1793, 1883, 2026
DdeI CTNAG 6 cut(s) 1013, 1542, 2435, 2577, 2693, 2811
DinI GGCGCC 1 cut(s) 283
DraI TTTAAA 1 cut(s) 2827
DraIII CACNNNGTG 1 cut(s) 1790
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
EaeI YGGCCR 4 cut(s) 247, 461, 777, 2406
EagI CGGCCG 1 cut(s) 247
Eam1104I CTCTTC 3 cut(s) 70, 672, 1325
EarI CTCTTC 3 cut(s) 70, 672, 1325
EciI GGCGGA 1 cut(s) 2231
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 8 cut(s) 747, 1134, 1480, 2021, 2052, 2318, 2409, 2681
Eco24I GRGCYC 2 cut(s) 1299, 2613
Eco47I GGWCC 2 cut(s) 744, 1666
Eco47III AGCGCT 1 cut(s) 793
Eco52I CGGCCG 1 cut(s) 247
Eco57I CTGAAG 3 cut(s) 1107, 1647, 2867
Eco72I CACGTG 1 cut(s) 385
Eco88I CYCGRG 2 cut(s) 28, 113
Eco91I GGTNACC 1 cut(s) 847
EcoO109I RGGNCCY 1 cut(s) 1666
EcoO65I GGTNACC 1 cut(s) 847
EcoRI GAATTC 1 cut(s) 1250
EcoRII CCWGG 3 cut(s) 1642, 1662, 2525
EcoT14I CCWWGG 8 cut(s) 747, 1134, 1480, 2021, 2052, 2318, 2409, 2681
EcoT38I GRGCYC 2 cut(s) 1299, 2613
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
ErhI CCWWGG 8 cut(s) 747, 1134, 1480, 2021, 2052, 2318, 2409, 2681
Esp3I CGTCTC 2 cut(s) 809, 854
FaqI GGGAC 2 cut(s) 619, 1085
FauI CCCGC 2 cut(s) 566, 1036
FbaI TGATCA 3 cut(s) 166, 1696, 2194
FblI GTMKAC 3 cut(s) 516, 994, 2634
FokI GGATG 7 cut(s) 932, 955, 1726, 2090, 2165, 2232, 2596
FriOI GRGCYC 2 cut(s) 1299, 2613
FspBI CTAG 7 cut(s) 1457, 1704, 1857, 1862, 1964, 2022, 2319
FspI TGCGCA 2 cut(s) 2390, 2703
GsaI CCCAGC 2 cut(s) 381, 2797
GsuI CTGGAG 2 cut(s) 1754, 2574
HaeII RGCGCY 4 cut(s) 285, 795, 2718, 2818
HaeIII GGCC 7 cut(s) 249, 463, 667, 779, 1485, 2350, 2408
HgaI GACGC 2 cut(s) 622, 2273
Hin1I GRCGYC 3 cut(s) 147, 282, 639
HincII GTYRAC 4 cut(s) 517, 529, 1060, 1975
HindII GTYRAC 4 cut(s) 517, 529, 1060, 1975
HindIII AAGCTT 4 cut(s) 1160, 1719, 1890, 1982
HphI GGTGA 6 cut(s) 161, 973, 1518, 1811, 1877, 2896
Hpy188I TCNGA 8 cut(s) 229, 919, 1126, 1810, 1960, 2152, 2629, 2645
HpyAV CCTTC 6 cut(s) 977, 1775, 1894, 2497, 2609, 2730
HpyCH4III ACNGT 7 cut(s) 78, 865, 1979, 2017, 2125, 2176, 2639
HpyCH4IV ACGT 7 cut(s) 147, 384, 429, 639, 818, 991, 2236
HpyF3I CTNAG 6 cut(s) 1013, 1542, 2435, 2577, 2693, 2811
HpySE526I ACGT 7 cut(s) 147, 384, 429, 639, 818, 991, 2236
Hsp92I GRCGYC 3 cut(s) 147, 282, 639
KasI GGCGCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 40
KpnI GGTACC 1 cut(s) 86
Ksp22I TGATCA 3 cut(s) 166, 1696, 2194
LguI GCTCTTC 1 cut(s) 70
LmnI GCTCC 8 cut(s) 393, 522, 591, 1198, 1275, 1756, 1826, 2593
LweI GCATC 4 cut(s) 168, 1315, 1847, 2137
MaeI CTAG 7 cut(s) 1457, 1704, 1857, 1862, 1964, 2022, 2319
MaeII ACGT 7 cut(s) 147, 384, 429, 639, 818, 991, 2236
MaeIII GTNAC 9 cut(s) 337, 847, 1008, 1940, 2011, 2082, 2275, 2302, 2665
MflI RGATCY 5 cut(s) 1207, 1505, 1630, 1960, 2458
MhlI GDGCHC 5 cut(s) 65, 1272, 1299, 2613, 2881
MlsI TGGCCA 2 cut(s) 779, 2408
MluNI TGGCCA 2 cut(s) 779, 2408
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 5 cut(s) 641, 720, 1067, 2331, 2849
MmeI TCCRAC 1 cut(s) 1582
Mox20I TGGCCA 2 cut(s) 779, 2408
MroI TCCGGA 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 506
MscI TGGCCA 2 cut(s) 779, 2408
MseI TTAA 5 cut(s) 1023, 1413, 2171, 2463, 2826
MslI CAYNNNNRTG 3 cut(s) 1175, 2250, 2578
Msp20I TGGCCA 2 cut(s) 779, 2408
MspA1I CMGCKG 5 cut(s) 129, 221, 279, 313, 488
MspR9I CCNGG 6 cut(s) 589, 604, 1470, 1644, 1664, 2527
Mva1269I GAATGC 2 cut(s) 1135, 1756
MvaI CCWGG 3 cut(s) 1644, 1664, 2527
MvnI CGCG 4 cut(s) 447, 2100, 2217, 2604
NarI GGCGCC 1 cut(s) 282
NciI CCSGG 3 cut(s) 589, 604, 1470
NcoI CCATGG 2 cut(s) 1480, 2052
NlaIV GGNNCC 5 cut(s) 84, 283, 492, 1467, 2589
NmeAIII GCCGAG 2 cut(s) 585, 713
NmuCI GTSAC 6 cut(s) 337, 1008, 1940, 2011, 2302, 2665
NruI TCGCGA 1 cut(s) 447
NsbI TGCGCA 2 cut(s) 2390, 2703
NspI RCATGY 1 cut(s) 1219
OliI CACNNNNGTG 1 cut(s) 2578
PaeR7I CTCGAG 1 cut(s) 113
PaqCI CACCTGC 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 7 cut(s) 410, 413, 435, 444, 522, 656, 659
PctI GAATGC 2 cut(s) 1135, 1756
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 6 cut(s) 56, 946, 1490, 1990, 2032, 2786
PflFI GACNNNGTC 2 cut(s) 149, 865
PflMI CCANNNNNTGG 2 cut(s) 2058, 2357
PfoI TCCNGGA 1 cut(s) 602
PleI GAGTC 5 cut(s) 641, 719, 1067, 2331, 2848
PluTI GGCGCC 1 cut(s) 285
PmaCI CACGTG 1 cut(s) 385
PmlI CACGTG 1 cut(s) 385
PpsI GAGTC 5 cut(s) 641, 719, 1067, 2331, 2848
Ppu21I YACGTR 2 cut(s) 385, 430
PpuMI RGGWCCY 1 cut(s) 1666
PsiI TTATAA 1 cut(s) 1598
Psp5II RGGWCCY 1 cut(s) 1666
Psp6I CCWGG 3 cut(s) 1642, 1662, 2525
PspCI CACGTG 1 cut(s) 385
PspEI GGTNACC 1 cut(s) 847
PspFI CCCAGC 2 cut(s) 377, 2793
PspGI CCWGG 3 cut(s) 1642, 1662, 2525
PspN4I GGNNCC 5 cut(s) 84, 283, 492, 1467, 2589
PspPI GGNCC 3 cut(s) 744, 1484, 1666
PspPPI RGGWCCY 1 cut(s) 1666
PstI CTGCAG 2 cut(s) 1304, 2874
PstNI CAGNNNCTG 2 cut(s) 1669, 2357
PsuI RGATCY 5 cut(s) 1207, 1505, 1630, 1960, 2458
PsyI GACNNNGTC 2 cut(s) 149, 865
PvuII CAGCTG 2 cut(s) 221, 313
RruI TCGCGA 1 cut(s) 447
RsaI GTAC 7 cut(s) 84, 271, 432, 1186, 1794, 1884, 2027
RsaNI GTAC 7 cut(s) 83, 270, 431, 1185, 1793, 1883, 2026
RseI CAYNNNNRTG 3 cut(s) 1175, 2250, 2578
SalI GTCGAC 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 5 cut(s) 1023, 1413, 2171, 2463, 2826
Sau96I GGNCC 3 cut(s) 744, 1484, 1666
SchI GAGTC 5 cut(s) 641, 720, 1067, 2331, 2849
ScrFI CCNGG 6 cut(s) 589, 604, 1470, 1644, 1664, 2527
SduI GDGCHC 5 cut(s) 65, 1272, 1299, 2613, 2881
SfaNI GCATC 4 cut(s) 168, 1315, 1847, 2137
SfcI CTRYAG 4 cut(s) 1300, 1648, 2635, 2870
SfoI GGCGCC 1 cut(s) 283
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 2 cut(s) 744, 1666
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 3 cut(s) 1175, 2250, 2578
SmlI CTYRAG 6 cut(s) 113, 568, 795, 1082, 1985, 2063
SmoI CTYRAG 6 cut(s) 113, 568, 795, 1082, 1985, 2063
SspDI GGCGCC 1 cut(s) 281
SspI AATATT 1 cut(s) 934
SspMI CTAG 7 cut(s) 1457, 1704, 1857, 1862, 1964, 2022, 2319
StyD4I CCNGG 6 cut(s) 587, 602, 1468, 1642, 1662, 2525
StyI CCWWGG 8 cut(s) 747, 1134, 1480, 2021, 2052, 2318, 2409, 2681
TaaI ACNGT 7 cut(s) 78, 865, 1979, 2017, 2125, 2176, 2639
TaiI ACGT 7 cut(s) 150, 387, 432, 642, 821, 994, 2239
TaqI TCGA 9 cut(s) 54, 114, 474, 516, 714, 1496, 2037, 2335, 2555
TatI WGTACW 2 cut(s) 1792, 1882
TauI GCSGC 6 cut(s) 51, 132, 249, 282, 2383, 2386
TfiI GAWTC 6 cut(s) 56, 946, 1490, 1990, 2032, 2786
Tru1I TTAA 5 cut(s) 1023, 1413, 2171, 2463, 2826
Tru9I TTAA 5 cut(s) 1023, 1413, 2171, 2463, 2826
TscAI CASTG 4 cut(s) 841, 1945, 2020, 2879
TseFI GTSAC 6 cut(s) 337, 1008, 1940, 2011, 2302, 2665
Tsp45I GTSAC 6 cut(s) 337, 1008, 1940, 2011, 2302, 2665
TspDTI ATGAA 6 cut(s) 92, 153, 959, 2246, 2254, 2536
TspGWI ACGGA 1 cut(s) 939
TspRI CASTG 4 cut(s) 841, 1945, 2020, 2879
Tth111I GACNNNGTC 2 cut(s) 149, 865
Van91I CCANNNNNTGG 2 cut(s) 2058, 2357
VpaK11BI GGWCC 2 cut(s) 744, 1666
XapI RAATTY 6 cut(s) 212, 1250, 1536, 1563, 2207, 2473
XbaI TCTAGA 1 cut(s) 1963
XceI RCATGY 1 cut(s) 1219
XhoI CTCGAG 1 cut(s) 113
XmaJI CCTAGG 2 cut(s) 2021, 2318
XmiI GTMKAC 3 cut(s) 516, 994, 2634
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 7 cut(s) 1457, 1704, 1857, 1862, 1964, 2022, 2319
ZraI GACGTC 2 cut(s) 148, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.