RLG00000001171

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008785
Physical Location & Seq
Reverse (-)
11291710 .. 11298524
6815 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001171

Sequence Viewer

Length: 2697 bp
ATGCCTCACAGAACGACTTACTTCTTCCCGAGGCAATTTCCTGATCGCCGCTTCGATTCGTGCTCTTCTGCCAAACAGTTGGTACCGCAAGATAGTCATCTTCATCATCATCTCGAGAAACAGAGCAGCGGCAGCAATGAAAACGACGTCGTCAGCAGCATCATTGATCACCACCAAAAGTCTAACAACAACAACCACAACAGCACCAAATTCACAGCTGTATCCGATCAGTATTTCACGGGCGGCCGAAACACCACCACCACCACAAGTAGTACCAGCAGCGGCGCCAGCACGCAATCCACCAAGAAGCAACAGCTGGCTTCCATTTGCGACTGGTACGTCACCGAGAAAAAGCACAACAACAAGCGGAGATCCAAAGCCAGCCACGTGAGGAGCACGAGATCGTCGCTGCCGTCGTTCTCCTGGCACGTACCCGACGAGGCTCGCGAGCTCCTGCTCCCGCCGGACGCCGTCGATGTGTCCTCGGCCGTGCCGGATACGACGTCGTTCAAGGTCGACCGGAGCGTTGACCGGAACTTTGACCGGCAGGTGTCCCTGCCGAGGCTGTCGAGCGGGAGTAGCTACGCCGGGAGCTTGTTCTCCGGGACGACGACGCTGGACGGGAACTTCTCCTGCGACGTCAAGGACTCGTCGGCGACGACGGGGCCGGTGGAGGAAGAGGAGGAGGTGGTGGGAGTGGAGGCGAGTAGGGATAGCTTGGCGCAGAGGTCCAAGGAGAGTTACGATTTGCAGCTTCTATTGGCCAAGAGGATTAGCGCTCAAGCTACTGTTGGTAGTGAGACGTTGCTTTTGCACCACACTGGCATTGAGGTTACCGATGTTGAGACGGTGTCGTATCGCCTCTGGGTTAGCGGCTGCTTGTCTTACAATGAGAAAATATCGGATGGTTTCTACAATATTTTGGGGATGAATCCGTATGTATGGGTTATGTGCAATGATGTGGAAGAAGGTAAACGTCTGCCATCGCTGATGTCACTTAGAGCAATTAAACCCGCAGAGACATCAATGGAGGTGGTTCTTGTTGACAAACATGGGGACTCTCGCCTCAAGGAACTTCAAGATAAGGCACAAGAACTTTATTGTGCTTCAGAGAATACCTTGGTGTTGGTGGAGAAACTTGGCAAGCTTGTCGCCATCTACATGGGGGGTACTTATCCTGTGGAACAAGGAGATCTCCACATGCGCTGGAAAGTGGTTAGCAAGAGATTGAGGGAATTCCAAAAGTGTATTGTGCTCCCCATTGGCAGCCTATCAATGGGGCTCTGCAGGCATCGTGCTATTCTCTTCAAGAAATTGGCAGACTACATAGGTTTACCTTGTCGGATAGCTCGTGGTTGCAAGTATTGTGTGGCAGATCATAGGTCTTCTTGTCTTGTTAAAATTGAAGACAGGCAGCGTGTGAGGGAATATGTGGTTGATCTAGTTGGGGAACCCGGAAATGTCCATGGCCCAGATTCCTCGATCAATGGATCTCTGTCTTCAATATCTTCACCATTTCAAATTTCTCAGCAAAAAGAGTTCCAACGAATTTATAGGGATAGTGGATTATGTTCCCAAATTATAAACTCAAAGCACACCCGTCCACCTCCTGAAGATCCTCTGTATCCAGACTACAGAGAGGAAAGCCAGGTCCTGAAAGATAGTAGTTTGCTTCCAGTTGATCAAACTAGATTTGGGATGGAAGCTTCTGTAATGCCTTTGGACTTGAAAGCGAATGCGGATTGCCTTCTCCAGACACCAATGCCACCTTGTGTACAAGGTGATATTTCCGAAGCTGTTGATGTGGGAGCTGCTATTGCATCATTAGAGGAATGTGCTAGACTAGGTGAAGAAAGTATTATTGTACAGCAAGCTTACCGGAAGGAGATTGTTGTGTCAAGAAGTGAAGTAATATGTAGCAGTGACAAGTCCAGTCAATCAGATCTAGAGGAGGTTGACAGTAAGCTTGACATTCAAAGCCGATTTTCTGCTGTGACTGTTCCTAGGTACTTGAATCTTGAACCATCTCTTGCTATGGACTGGCTTGAGATCGCATGGGATGAGTTACATATCAAAGAGCGCGTTGGTGCTGGCTCATTTGGAACTGTGCATCGCGCTGAATGGCATGGATCGGATGTAGCTGTCAAGGTTTTAACTGTTCAAGATTTCCATGATGATCAGTTGAGGGAATTTTTGCGCGAGGTTGCAATTATGAAACGTGTCCGCCATCCCAATGTAGTTCTGTTCATGGGTGCAGTTACAAAGCGTCCACATCTCTCAATAGTGACAGAGTATTTACCTAGGGGTAGTCTATATCGACTCATACACAGGCCAGCTTCGGGGGAACTTCTGGATCATAGGCGGCGGCTGCGCATGGCATTAGATGTGGCCAAGGGGATCAATTACCTCCATTGTCTTAGCCCTCCTATTGTCCATTGGGATCTTAAATCTCCAAATTTGTTGGTTGATAAAAATTGGACAGCGAAGGTATGCGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTAGCTGGAACACCTGAGTGGATGGCTCCAGAGTTCCTTCGCGGAGAGCCCTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTAATCCTCTGGGAACTTGTAACCATGCAACAACCTTGGAGTGGGCTTAGTCCTGCACAGCAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

899

Amino Acids

100.6

Weight (kDa)

6.44

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 281 - 488 8.8e-76 EDR1/CTR1/ARMC3, peptidase-like
PK_Tyr_Ser-Thr PF07714 689 - 896 1e-50 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 690 - 891 1.3e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1583
AarI CACCTGC 1 cut(s) 538
AasI GACNNNNNNGTC 1 cut(s) 338
AatII GACGTC 3 cut(s) 150, 506, 642
Acc16I TGCGCA 1 cut(s) 2372
Acc36I ACCTGC 1 cut(s) 538
Acc65I GGTACC 1 cut(s) 82
AccB1I GGYRCC 2 cut(s) 82, 284
AccBSI CCGCTC 1 cut(s) 573
AccI GTMKAC 2 cut(s) 516, 2616
AccII CGCG 5 cut(s) 447, 2082, 2115, 2199, 2586
AclWI GGATC 7 cut(s) 366, 1498, 1610, 2137, 2361, 2405, 2448
AcoI YGGCCR 4 cut(s) 244, 486, 762, 2388
AcsI RAATTY 6 cut(s) 209, 1235, 1521, 1548, 2189, 2455
AcuI CTGAAG 2 cut(s) 1092, 1632
AcvI CACGTG 1 cut(s) 388
AcyI GRCGYC 5 cut(s) 147, 285, 468, 503, 639
AdeI CACNNNGTG 1 cut(s) 1772
AfaI GTAC 8 cut(s) 84, 274, 338, 432, 1171, 1776, 1866, 2009
AfeI AGCGCT 1 cut(s) 778
AfiI CCNNNNNNNGG 4 cut(s) 561, 1276, 2339, 2669
AflIII ACRYGT 1 cut(s) 2218
AjnI CCWGG 2 cut(s) 422, 1647
AleI CACNNNNGTG 1 cut(s) 2560
Alw21I GWGCWC 4 cut(s) 65, 398, 453, 1257
Alw26I GTCTC 3 cut(s) 794, 839, 1013
AlwI GGATC 7 cut(s) 366, 1498, 1610, 2137, 2361, 2405, 2448
AlwNI CAGNNNCTG 1 cut(s) 1654
Ama87I CYCGRG 2 cut(s) 28, 113
Aor51HI AGCGCT 1 cut(s) 778
AoxI GGCC 7 cut(s) 244, 486, 665, 762, 1468, 2330, 2388
ApoI RAATTY 6 cut(s) 209, 1235, 1521, 1548, 2189, 2455
ArsI GACNNNNNNTTYG 6 cut(s) 521, 553, 793, 825, 2591, 2623
Asp718I GGTACC 1 cut(s) 82
AspA2I CCTAGG 2 cut(s) 2003, 2300
AspLEI GCGC 8 cut(s) 287, 724, 779, 1206, 2082, 2117, 2199, 2373
AspS9I GGNCC 4 cut(s) 665, 729, 1469, 1651
AsuC2I CCSGG 3 cut(s) 589, 604, 1455
AsuHPI GGTGA 5 cut(s) 161, 334, 1503, 1793, 1859
AvaI CYCGRG 2 cut(s) 28, 113
AvaII GGWCC 2 cut(s) 729, 1651
AvrII CCTAGG 2 cut(s) 2003, 2300
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BalI TGGCCA 2 cut(s) 764, 2390
BanI GGYRCC 2 cut(s) 82, 284
BanII GRGCYC 3 cut(s) 453, 1284, 2595
BauI CACGAG 2 cut(s) 397, 1350
BbrPI CACGTG 1 cut(s) 388
BbsI GAAGAC 3 cut(s) 1377, 1413, 1491
Bbv12I GWGCWC 4 cut(s) 65, 398, 453, 1257
BccI CCATC 7 cut(s) 899, 991, 1163, 1693, 2032, 2235, 2560
BceAI ACGGC 3 cut(s) 397, 455, 473
BcgI CGANNNNNNTGC 2 cut(s) 1132, 1166
BciT130I CCWGG 2 cut(s) 424, 1649
BciVI GTATCC 3 cut(s) 232, 490, 1635
BclI TGATCA 3 cut(s) 166, 1681, 2176
BcnI CCSGG 3 cut(s) 589, 604, 1455
BcoDI GTCTC 3 cut(s) 794, 839, 1013
BfaI CTAG 7 cut(s) 1442, 1689, 1839, 1844, 1946, 2004, 2301
BfmI CTRYAG 4 cut(s) 1285, 1633, 2544, 2617
BfoI RGCGCY 2 cut(s) 288, 780
BfuAI ACCTGC 1 cut(s) 538
BfuI GTATCC 3 cut(s) 232, 490, 1635
BglII AGATCT 2 cut(s) 1192, 1942
BlnI CCTAGG 2 cut(s) 2003, 2300
Bme1390I CCNGG 5 cut(s) 424, 589, 604, 1455, 1649
Bme18I GGWCC 2 cut(s) 729, 1651
BmeT110I CYCGRG 2 cut(s) 28, 113
BmgT120I GGNCC 4 cut(s) 665, 729, 1469, 1651
BmiI GGNNCC 5 cut(s) 84, 286, 666, 1452, 2571
BmrFI CCNGG 5 cut(s) 424, 589, 604, 1455, 1649
BmsI GCATC 4 cut(s) 168, 1300, 1829, 2119
BpiI GAAGAC 3 cut(s) 1377, 1413, 1491
BplI GAGNNNNNCTC 2 cut(s) 2619, 2651
BpmI CTGGAG 2 cut(s) 1736, 2556
BpuEI CTTGAG 3 cut(s) 765, 1052, 2066
BpuMI CCSGG 3 cut(s) 589, 604, 1455
BsaAI YACGTR 2 cut(s) 388, 430
BsaBI GATNNNNATC 1 cut(s) 96
BsaHI GRCGYC 5 cut(s) 147, 285, 468, 503, 639
BsaWI WCCGGW 3 cut(s) 519, 531, 1878
Bsc4I CCNNNNNNNGG 4 cut(s) 561, 1276, 2339, 2669
Bse118I RCCGGY 2 cut(s) 543, 667
Bse1I ACTGG 5 cut(s) 338, 826, 1676, 1932, 2045
Bse3DI GCAATG 2 cut(s) 142, 961
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 2 cut(s) 424, 1649
BseGI GGATG 7 cut(s) 910, 933, 1704, 2065, 2140, 2227, 2571
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 4 cut(s) 561, 1276, 2339, 2669
BseMI GCAATG 2 cut(s) 142, 961
BseMII CTCAG 2 cut(s) 1541, 2550
BseNI ACTGG 5 cut(s) 338, 826, 1676, 1932, 2045
BseRI GAGGAG 4 cut(s) 406, 695, 698, 1964
BseX3I CGGCCG 2 cut(s) 244, 486
BsgI GTGCAG 2 cut(s) 2274, 2667
Bsh1236I CGCG 5 cut(s) 447, 2082, 2115, 2199, 2586
Bsh1285I CGRYCG 3 cut(s) 247, 489, 520
BshFI GGCC 7 cut(s) 246, 488, 667, 764, 1470, 2332, 2390
BshNI GGYRCC 2 cut(s) 82, 284
BsiEI CGRYCG 3 cut(s) 247, 489, 520
BsiHKAI GWGCWC 4 cut(s) 65, 398, 453, 1257
BsiHKCI CYCGRG 2 cut(s) 28, 113
BslFI GGGAC 3 cut(s) 538, 619, 1070
BslI CCNNNNNNNGG 4 cut(s) 561, 1276, 2339, 2669
BsmAI GTCTC 3 cut(s) 794, 839, 1013
BsmBI CGTCTC 2 cut(s) 794, 839
BsmFI GGGAC 3 cut(s) 538, 619, 1070
BsmI GAATGC 1 cut(s) 1741
BsnI GGCC 7 cut(s) 246, 488, 667, 764, 1470, 2332, 2390
BsoBI CYCGRG 2 cut(s) 28, 113
Bsp1286I GDGCHC 6 cut(s) 65, 398, 453, 1257, 1284, 2595
Bsp1407I TGTACA 2 cut(s) 1774, 1864
Bsp19I CCATGG 1 cut(s) 1465
Bsp68I TCGCGA 1 cut(s) 447
BspANI GGCC 7 cut(s) 246, 488, 667, 764, 1470, 2332, 2390
BspCNI CTCAG 2 cut(s) 1540, 2551
BspFNI CGCG 5 cut(s) 447, 2082, 2115, 2199, 2586
BspLI GGNNCC 5 cut(s) 84, 286, 666, 1452, 2571
BspMAI CTGCAG 1 cut(s) 1289
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 7 cut(s) 366, 1498, 1610, 2137, 2361, 2405, 2448
BspQI GCTCTTC 1 cut(s) 70
BspT107I GGYRCC 2 cut(s) 82, 284
BsrBI CCGCTC 1 cut(s) 573
BsrDI GCAATG 2 cut(s) 142, 961
BsrFI RCCGGY 2 cut(s) 543, 667
BsrGI TGTACA 2 cut(s) 1774, 1864
BsrI ACTGG 5 cut(s) 338, 826, 1676, 1932, 2045
BssAI RCCGGY 2 cut(s) 543, 667
BssNI GRCGYC 5 cut(s) 147, 285, 468, 503, 639
BssSI CACGAG 2 cut(s) 397, 1350
BssT1I CCWWGG 7 cut(s) 732, 1119, 1465, 2003, 2300, 2391, 2663
Bst2BI CACGAG 2 cut(s) 397, 1350
Bst2UI CCWGG 2 cut(s) 424, 1649
Bst4CI ACNGT 8 cut(s) 78, 790, 850, 1961, 1999, 2107, 2158, 2621
Bst6I CTCTTC 3 cut(s) 70, 672, 1310
BstACI GRCGYC 5 cut(s) 147, 285, 468, 503, 639
BstAUI TGTACA 2 cut(s) 1774, 1864
BstBAI YACGTR 2 cut(s) 388, 430
BstDEI CTNAG 5 cut(s) 998, 1527, 2417, 2559, 2675
BstDSI CCRYGG 1 cut(s) 1465
BstEII GGTNACC 1 cut(s) 832
BstF5I GGATG 7 cut(s) 910, 933, 1704, 2065, 2140, 2227, 2571
BstFNI CGCG 5 cut(s) 447, 2082, 2115, 2199, 2586
BstH2I RGCGCY 2 cut(s) 288, 780
BstHHI GCGC 8 cut(s) 287, 724, 779, 1206, 2082, 2117, 2199, 2373
BstMAI GTCTC 3 cut(s) 794, 839, 1013
BstMCI CGRYCG 3 cut(s) 247, 489, 520
BstMWI GCNNNNNNNGC 6 cut(s) 132, 288, 579, 1288, 1817, 2368
BstNI CCWGG 2 cut(s) 424, 1649
BstNSI RCATGY 1 cut(s) 1204
BstPI GGTNACC 1 cut(s) 832
BstSCI CCNGG 5 cut(s) 422, 587, 602, 1453, 1647
BstSFI CTRYAG 4 cut(s) 1285, 1633, 2544, 2617
BstUI CGCG 5 cut(s) 447, 2082, 2115, 2199, 2586
BstV2I GAAGAC 3 cut(s) 1377, 1413, 1491
BstX2I RGATCY 6 cut(s) 371, 1192, 1490, 1615, 1942, 2440
BstXI CCANNNNNNTGG 2 cut(s) 79, 1162
BstYI RGATCY 6 cut(s) 371, 1192, 1490, 1615, 1942, 2440
BstZI CGGCCG 2 cut(s) 244, 486
BsuI GTATCC 3 cut(s) 232, 490, 1635
BsuRI GGCC 7 cut(s) 246, 488, 667, 764, 1470, 2332, 2390
BtgI CCRYGG 1 cut(s) 1465
BtgZI GCGATG 2 cut(s) 969, 2096
BtsCI GGATG 7 cut(s) 910, 933, 1704, 2065, 2140, 2227, 2571
BtsI GCAGTG 1 cut(s) 1927
BtsIMutI CAGTG 2 cut(s) 819, 1927
BtuMI TCGCGA 1 cut(s) 447
BveI ACCTGC 1 cut(s) 538
CaiI CAGNNNCTG 1 cut(s) 1654
CfoI GCGC 8 cut(s) 287, 724, 779, 1206, 2082, 2117, 2199, 2373
Cfr10I RCCGGY 2 cut(s) 543, 667
Cfr13I GGNCC 4 cut(s) 665, 729, 1469, 1651
CseI GACGC 3 cut(s) 476, 622, 2255
Csp6I GTAC 8 cut(s) 83, 273, 337, 431, 1170, 1775, 1865, 2008
CspCI CAANNNNNGTGG 2 cut(s) 1014, 1049
CviQI GTAC 8 cut(s) 83, 273, 337, 431, 1170, 1775, 1865, 2008
DdeI CTNAG 5 cut(s) 998, 1527, 2417, 2559, 2675
DinI GGCGCC 1 cut(s) 286
DraIII CACNNNGTG 1 cut(s) 1772
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 4 cut(s) 244, 486, 762, 2388
EagI CGGCCG 2 cut(s) 244, 486
Eam1104I CTCTTC 3 cut(s) 70, 672, 1310
EarI CTCTTC 3 cut(s) 70, 672, 1310
EciI GGCGGA 1 cut(s) 2213
Ecl136II GAGCTC 1 cut(s) 451
EclXI CGGCCG 2 cut(s) 244, 486
Eco130I CCWWGG 7 cut(s) 732, 1119, 1465, 2003, 2300, 2391, 2663
Eco24I GRGCYC 3 cut(s) 453, 1284, 2595
Eco47I GGWCC 2 cut(s) 729, 1651
Eco47III AGCGCT 1 cut(s) 778
Eco52I CGGCCG 2 cut(s) 244, 486
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 1092, 1632
Eco72I CACGTG 1 cut(s) 388
Eco88I CYCGRG 2 cut(s) 28, 113
Eco91I GGTNACC 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 1651
EcoO65I GGTNACC 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 1235
EcoRII CCWGG 2 cut(s) 422, 1647
EcoT14I CCWWGG 7 cut(s) 732, 1119, 1465, 2003, 2300, 2391, 2663
EcoT38I GRGCYC 3 cut(s) 453, 1284, 2595
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 7 cut(s) 732, 1119, 1465, 2003, 2300, 2391, 2663
Esp3I CGTCTC 2 cut(s) 794, 839
FaqI GGGAC 3 cut(s) 538, 619, 1070
FauI CCCGC 3 cut(s) 468, 566, 1021
FbaI TGATCA 3 cut(s) 166, 1681, 2176
FblI GTMKAC 2 cut(s) 516, 2616
FokI GGATG 7 cut(s) 917, 940, 1711, 2072, 2147, 2214, 2578
FriOI GRGCYC 3 cut(s) 453, 1284, 2595
FspBI CTAG 7 cut(s) 1442, 1689, 1839, 1844, 1946, 2004, 2301
FspI TGCGCA 1 cut(s) 2372
GlaI GCGC 8 cut(s) 286, 723, 778, 1205, 2081, 2116, 2198, 2372
GsuI CTGGAG 2 cut(s) 1736, 2556
HaeII RGCGCY 2 cut(s) 288, 780
HaeIII GGCC 7 cut(s) 246, 488, 667, 764, 1470, 2332, 2390
HgaI GACGC 3 cut(s) 476, 622, 2255
HhaI GCGC 8 cut(s) 287, 724, 779, 1206, 2082, 2117, 2199, 2373
Hin1I GRCGYC 5 cut(s) 147, 285, 468, 503, 639
Hin6I GCGC 8 cut(s) 285, 722, 777, 1204, 2080, 2115, 2197, 2371
HinP1I GCGC 8 cut(s) 285, 722, 777, 1204, 2080, 2115, 2197, 2371
HincII GTYRAC 4 cut(s) 517, 529, 1045, 1957
HindII GTYRAC 4 cut(s) 517, 529, 1045, 1957
HindIII AAGCTT 4 cut(s) 1145, 1704, 1872, 1964
HinfI GANTC 8 cut(s) 56, 647, 931, 1058, 1475, 2014, 2319, 2511
HphI GGTGA 5 cut(s) 161, 334, 1503, 1793, 1859
Hpy188I TCNGA 8 cut(s) 226, 904, 1111, 1344, 1792, 1942, 2134, 2611
HpyAV CCTTC 5 cut(s) 962, 1757, 1876, 2479, 2591
HpyCH4III ACNGT 8 cut(s) 78, 790, 850, 1961, 1999, 2107, 2158, 2621
HpyCH4IV ACGT 9 cut(s) 147, 339, 387, 429, 503, 639, 803, 976, 2218
HpyF10VI GCNNNNNNNGC 6 cut(s) 132, 288, 579, 1288, 1817, 2368
HpyF3I CTNAG 5 cut(s) 998, 1527, 2417, 2559, 2675
HpySE526I ACGT 9 cut(s) 147, 339, 387, 429, 503, 639, 803, 976, 2218
Hsp92I GRCGYC 5 cut(s) 147, 285, 468, 503, 639
HspAI GCGC 8 cut(s) 285, 722, 777, 1204, 2080, 2115, 2197, 2371
KasI GGCGCC 1 cut(s) 284
KpnI GGTACC 1 cut(s) 86
Ksp22I TGATCA 3 cut(s) 166, 1681, 2176
LguI GCTCTTC 1 cut(s) 70
LmnI GCTCC 8 cut(s) 393, 456, 462, 522, 591, 1260, 1808, 2575
LweI GCATC 4 cut(s) 168, 1300, 1829, 2119
MaeI CTAG 7 cut(s) 1442, 1689, 1839, 1844, 1946, 2004, 2301
MaeII ACGT 9 cut(s) 147, 339, 387, 429, 503, 639, 803, 976, 2218
MbiI CCGCTC 1 cut(s) 573
MflI RGATCY 6 cut(s) 371, 1192, 1490, 1615, 1942, 2440
MhlI GDGCHC 6 cut(s) 65, 398, 453, 1257, 1284, 2595
MlsI TGGCCA 2 cut(s) 764, 2390
MluNI TGGCCA 2 cut(s) 764, 2390
Mly113I GGCGCC 1 cut(s) 285
MlyI GAGTC 3 cut(s) 641, 1052, 2313
MmeI TCCRAC 2 cut(s) 1322, 1567
Mox20I TGGCCA 2 cut(s) 764, 2390
MscI TGGCCA 2 cut(s) 764, 2390
MseI TTAA 4 cut(s) 1008, 1398, 2153, 2445
MslI CAYNNNNRTG 3 cut(s) 1160, 2232, 2560
Msp20I TGGCCA 2 cut(s) 764, 2390
MspA1I CMGCKG 4 cut(s) 129, 218, 282, 316
MspR9I CCNGG 5 cut(s) 424, 589, 604, 1455, 1649
Mva1269I GAATGC 1 cut(s) 1741
MvaI CCWGG 2 cut(s) 424, 1649
MvnI CGCG 5 cut(s) 447, 2082, 2115, 2199, 2586
MwoI GCNNNNNNNGC 6 cut(s) 132, 288, 579, 1288, 1817, 2368
NarI GGCGCC 1 cut(s) 285
NciI CCSGG 3 cut(s) 589, 604, 1455
NcoI CCATGG 1 cut(s) 1465
NlaIV GGNNCC 5 cut(s) 84, 286, 666, 1452, 2571
NmeAIII GCCGAG 2 cut(s) 464, 585
NmuCI GTSAC 5 cut(s) 340, 993, 1922, 1993, 2284
NruI TCGCGA 1 cut(s) 447
NsbI TGCGCA 1 cut(s) 2372
NspI RCATGY 1 cut(s) 1204
OliI CACNNNNGTG 1 cut(s) 2560
PaeR7I CTCGAG 1 cut(s) 113
PaqCI CACCTGC 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 7 cut(s) 410, 413, 435, 444, 522, 656, 1348
PctI GAATGC 1 cut(s) 1741
PfeI GAWTC 5 cut(s) 56, 931, 1475, 2014, 2511
PflFI GACNNNGTC 3 cut(s) 149, 470, 850
PfoI TCCNGGA 1 cut(s) 602
PleI GAGTC 3 cut(s) 641, 1052, 2313
PluTI GGCGCC 1 cut(s) 288
PmaCI CACGTG 1 cut(s) 388
PmlI CACGTG 1 cut(s) 388
PpsI GAGTC 3 cut(s) 641, 1052, 2313
Ppu21I YACGTR 2 cut(s) 388, 430
PpuMI RGGWCCY 1 cut(s) 1651
PsiI TTATAA 1 cut(s) 1583
Psp124BI GAGCTC 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 1651
Psp6I CCWGG 2 cut(s) 422, 1647
PspCI CACGTG 1 cut(s) 388
PspEI GGTNACC 1 cut(s) 832
PspGI CCWGG 2 cut(s) 422, 1647
PspN4I GGNNCC 5 cut(s) 84, 286, 666, 1452, 2571
PspPI GGNCC 4 cut(s) 665, 729, 1469, 1651
PspPPI RGGWCCY 1 cut(s) 1651
PstI CTGCAG 1 cut(s) 1289
PstNI CAGNNNCTG 1 cut(s) 1654
PsuI RGATCY 6 cut(s) 371, 1192, 1490, 1615, 1942, 2440
PsyI GACNNNGTC 3 cut(s) 149, 470, 850
PvuII CAGCTG 2 cut(s) 218, 316
RruI TCGCGA 1 cut(s) 447
RsaI GTAC 8 cut(s) 84, 274, 338, 432, 1171, 1776, 1866, 2009
RsaNI GTAC 8 cut(s) 83, 273, 337, 431, 1170, 1775, 1865, 2008
RseI CAYNNNNRTG 3 cut(s) 1160, 2232, 2560
SacI GAGCTC 1 cut(s) 453
SalI GTCGAC 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 4 cut(s) 1008, 1398, 2153, 2445
Sau96I GGNCC 4 cut(s) 665, 729, 1469, 1651
SchI GAGTC 3 cut(s) 641, 1052, 2313
ScrFI CCNGG 5 cut(s) 424, 589, 604, 1455, 1649
SduI GDGCHC 6 cut(s) 65, 398, 453, 1257, 1284, 2595
SfaNI GCATC 4 cut(s) 168, 1300, 1829, 2119
SfcI CTRYAG 4 cut(s) 1285, 1633, 2544, 2617
SfoI GGCGCC 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 2 cut(s) 729, 1651
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 3 cut(s) 1160, 2232, 2560
SmlI CTYRAG 4 cut(s) 113, 780, 1067, 2045
SmoI CTYRAG 4 cut(s) 113, 780, 1067, 2045
SspDI GGCGCC 1 cut(s) 284
SspI AATATT 1 cut(s) 919
SspMI CTAG 7 cut(s) 1442, 1689, 1839, 1844, 1946, 2004, 2301
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 5 cut(s) 422, 587, 602, 1453, 1647
StyI CCWWGG 7 cut(s) 732, 1119, 1465, 2003, 2300, 2391, 2663
TaaI ACNGT 8 cut(s) 78, 790, 850, 1961, 1999, 2107, 2158, 2621
TaiI ACGT 9 cut(s) 150, 342, 390, 432, 506, 642, 806, 979, 2221
TaqI TCGA 8 cut(s) 54, 114, 474, 516, 569, 1481, 2317, 2537
TatI WGTACW 2 cut(s) 1774, 1864
TauI GCSGC 7 cut(s) 51, 132, 246, 285, 876, 2365, 2368
TfiI GAWTC 5 cut(s) 56, 931, 1475, 2014, 2511
Tru1I TTAA 4 cut(s) 1008, 1398, 2153, 2445
Tru9I TTAA 4 cut(s) 1008, 1398, 2153, 2445
TscAI CASTG 2 cut(s) 826, 1927
TseFI GTSAC 5 cut(s) 340, 993, 1922, 1993, 2284
Tsp45I GTSAC 5 cut(s) 340, 993, 1922, 1993, 2284
TspDTI ATGAA 6 cut(s) 92, 153, 944, 2228, 2236, 2518
TspGWI ACGGA 1 cut(s) 924
TspRI CASTG 2 cut(s) 826, 1927
Tth111I GACNNNGTC 3 cut(s) 149, 470, 850
VpaK11BI GGWCC 2 cut(s) 729, 1651
XapI RAATTY 6 cut(s) 209, 1235, 1521, 1548, 2189, 2455
XbaI TCTAGA 1 cut(s) 1945
XceI RCATGY 1 cut(s) 1204
XhoI CTCGAG 1 cut(s) 113
XmaJI CCTAGG 2 cut(s) 2003, 2300
XmiI GTMKAC 2 cut(s) 516, 2616
XspI CTAG 7 cut(s) 1442, 1689, 1839, 1844, 1946, 2004, 2301
ZraI GACGTC 3 cut(s) 148, 504, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.