Rroxscaffold_3G00226170

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008785
Physical Location & Seq
Reverse (-)
9583847 .. 9592235
8389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226170.1

Sequence Viewer

Length: 2163 bp
ATGCCTCACAGAACGACTTACTTCTTCCCGAGGCAATTTCCGGATCGCCGCTTCGATTCGTGCTCTTCTGCCAAACAGTTGGTACCGCAAGATAGTCATCTTCATCATCATCTCAAGAAACAGAGCAGCGGCAGCAATGAAAACGCCGTCGTCAGCAGCATCATTGATCACCACCAAAAGTCTAACAACAACAACCACAACAGCACCAAATTCACAGCTGTATCCGACCAGTATTTCACGGGCGGCCGAAACACCGCCACCACCAGAAGTAGTACCAGCAGCGGCGCCAGCACGCAATCCACCAAGAAGCAACAGCTGGCTTCCATTTGCGACTGGTTCGTCACCGAGAAAAAGCACAACAACAAGCGGAGATCCAAACCCAGCCACGTGAGGAGCACGAGATCGTCGCTGCCGTCGTTCTCCTGCCACGTACCCGACAAGGATCGCGAGCTCCTGCTCCCGCCGGAGGCAGTCGATGTGTCCTCGGCCGTGCCGGATACGACGTCGTTCAAGGTCGACTGGAGCGTTGACCGGAACTTTGACCGGCAGGTGTCGCTGCCGAGGCTCTCAAGCGGGAGTAGCTACGCCGGGAGCTTGTTCTCCGGGACGACGACGCTGGACGGGAACTTCTCCGGCGACGTCAAGGACTCGTCGGCGACGACGAGGCCGGTGGAGGAAGAGGAGGAGATGGTGGGAGTGGAGGCGAGTAGGGATAGCTTGGCGCAGAGGTCCAAGGAGAGCTACTATTTGCAGCTTCTATTGGCCAAGAGGATTAGCGCTCAAGCTACTCTTGGTAGTGAGACGTTGCTTTTGCGCCACACTAGCATTGAGGTTACCGATGTTGAGACGGTGTCGTATCGCCTCTGGGTTAGTGGCTGCTTGTCTTACAATGAGAAAATATCGGATGGTTTCTACAATATTTTGGGGCTGAATCCGCATCTATGGGTGACGTGCAATGATGTGGAAGAAGGTAAACGTCTACCATCGCTGATGTCACTTAGAGCAATTAAGCCCGCAGAGACATCAATGGAGGTGGTTCTTGTTGACAAACATGGGGACTCTCGCCTCAAGGAACTTCAAGATAAGGCACAAGAACTTTATTGTGCTTCAGAGAATACCTTGGTGTTGGTGGAGAAACTTGGCAAGCTTGTCGCCATCTACACGGGGGGTACTTATCCTGTGGAGCAAGGAGATCTCCACATGCGCTGGAAAGTGGTTAGCAAGAGATTGAGGGAATTCCAAAAGTGTATTGTGCTCCCCATTGGCAGCCTATCAATGGGGCTCTGCAGGCATCGTGCTATTCTCTTCAAGAAATTGGCAGACTACATAGGTTTACCTTGCCGGATAGCTCGTGGTTGCAAGTATTGTGTGGCAGATCATAGGTCTTCTTGTCTTGTTAAAATTGAAGACAGGCAGCTTGTGAGGGAATATGTGGTTGATCTAGTTGGGGAACCCGGAAATGTCCATGGCCCAGATTCCTCGATCAATGGATCTCTGTCTTCAATATCTTCACCATTTCAAATTTCTCAGCAAAAAGAGTTCCAACGAATTTATAGGGATAGTGGATTATGTTCCCAAATTATAAACTCAAAGCACACTCGTCCACCTCCTGAAGATCCTCTGTATCCAGGCTACAGAGACGAAAGCCAGGTCCTGAAAGATAGTAGTTTGCTTCCAGTTGATCAAACTAGATTTGGGATGGAAGCTTCTGTAATGCCTTTGGACTTGAAAGCGAATGCGGAGCATTGCCTTCTCCAGACACCAATGCCATCTTGTGTAAAAGGTGATATTTCCGAAGCTGTTGATGTGGGAGCTGCCATTGCATCGTTAGAGGAATGTGCTAGACTAGGTGAAGAAAGTATTATTGTACAGCAAGCTTACCGGAAGGAGATTGTTGTGTCAAGAAGTGGAGTAATATGTAGCAGTGACAAGTCCAGTCAATCAGATCTAGAGGAGGTTGACAGTAAGCTTGAGATTCAAAGCCGATTTTCTGCTGCCACTGTTCCTAGGTACTTGAATCTCGAACCATCTCTTGCTATGGACTGGCTTGAGATCGCATGGGATGAGTTACATATCAAAGAGCGCGTTGGTGCTGGCTCATTTGGAACTGTGCATCGTGCTGAATGGCATGGATCGGTTAGTAATTTAATCATTGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

720

Amino Acids

80.11

Weight (kDa)

6.65

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 281 - 488 6.9e-73 EDR1/CTR1/ARMC3, peptidase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1583
AarI CACCTGC 1 cut(s) 538
AasI GACNNNNNNGTC 1 cut(s) 338
AatII GACGTC 2 cut(s) 506, 642
Acc36I ACCTGC 1 cut(s) 538
Acc65I GGTACC 1 cut(s) 82
AccB1I GGYRCC 2 cut(s) 82, 284
AccI GTMKAC 2 cut(s) 516, 979
AccII CGCG 2 cut(s) 447, 2085
AccIII TCCGGA 1 cut(s) 40
AclWI GGATC 6 cut(s) 51, 366, 450, 1498, 1610, 2140
AcoI YGGCCR 3 cut(s) 244, 486, 762
AcsI RAATTY 4 cut(s) 209, 1235, 1521, 1548
AcuI CTGAAG 2 cut(s) 1092, 1632
AcvI CACGTG 1 cut(s) 388
AcyI GRCGYC 3 cut(s) 285, 503, 639
AfaI GTAC 6 cut(s) 84, 274, 432, 1171, 1869, 2012
AfeI AGCGCT 1 cut(s) 778
AfiI CCNNNNNNNGG 2 cut(s) 466, 1276
AgsI TTSAA 9 cut(s) 511, 1079, 1309, 1406, 1503, 1520, 1729, 1979, 2017
AjiI CACGTC 1 cut(s) 951
AjnI CCWGG 2 cut(s) 1627, 1647
Alw21I GWGCWC 4 cut(s) 65, 398, 453, 1257
Alw26I GTCTC 4 cut(s) 794, 839, 1013, 1632
AlwI GGATC 6 cut(s) 51, 366, 450, 1498, 1610, 2140
AlwNI CAGNNNCTG 1 cut(s) 1654
Ama87I CYCGRG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 778
AoxI GGCC 5 cut(s) 244, 486, 665, 762, 1468
ApoI RAATTY 4 cut(s) 209, 1235, 1521, 1548
ArsI GACNNNNNNTTYG 6 cut(s) 521, 553, 793, 825, 1635, 1667
Asp718I GGTACC 1 cut(s) 82
AspA2I CCTAGG 1 cut(s) 2006
AspLEI GCGC 6 cut(s) 287, 724, 779, 816, 1206, 2085
AspS9I GGNCC 3 cut(s) 729, 1469, 1651
AsuC2I CCSGG 3 cut(s) 589, 604, 1455
AsuHPI GGTGA 6 cut(s) 161, 334, 958, 1503, 1796, 1862
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 2 cut(s) 729, 1651
AvrII CCTAGG 1 cut(s) 2006
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BalI TGGCCA 1 cut(s) 764
BanI GGYRCC 2 cut(s) 82, 284
BanII GRGCYC 2 cut(s) 453, 1284
BauI CACGAG 2 cut(s) 397, 1350
BbrPI CACGTG 1 cut(s) 388
BbsI GAAGAC 3 cut(s) 1377, 1413, 1491
Bbv12I GWGCWC 4 cut(s) 65, 398, 453, 1257
BccI CCATC 7 cut(s) 682, 899, 991, 1163, 1693, 1777, 2035
BceAI ACGGC 3 cut(s) 131, 397, 473
BcgI CGANNNNNNTGC 2 cut(s) 1132, 1166
BciT130I CCWGG 2 cut(s) 1629, 1649
BciVI GTATCC 3 cut(s) 232, 490, 1635
BclI TGATCA 2 cut(s) 166, 1681
BcnI CCSGG 3 cut(s) 589, 604, 1455
BcoDI GTCTC 4 cut(s) 794, 839, 1013, 1632
BfaI CTAG 7 cut(s) 822, 1442, 1689, 1842, 1847, 1949, 2007
BfmI CTRYAG 2 cut(s) 1285, 1633
BfoI RGCGCY 2 cut(s) 288, 780
BfuAI ACCTGC 1 cut(s) 538
BfuI GTATCC 3 cut(s) 232, 490, 1635
BglII AGATCT 2 cut(s) 1192, 1945
BlnI CCTAGG 1 cut(s) 2006
Bme1390I CCNGG 5 cut(s) 589, 604, 1455, 1629, 1649
Bme18I GGWCC 2 cut(s) 729, 1651
BmeT110I CYCGRG 1 cut(s) 28
BmgBI CACGTC 1 cut(s) 951
BmgT120I GGNCC 3 cut(s) 729, 1469, 1651
BmiI GGNNCC 3 cut(s) 84, 286, 1452
BmrFI CCNGG 5 cut(s) 589, 604, 1455, 1629, 1649
BmsI GCATC 5 cut(s) 168, 946, 1300, 1832, 2122
BpiI GAAGAC 3 cut(s) 1377, 1413, 1491
BpmI CTGGAG 2 cut(s) 541, 1739
BpuEI CTTGAG 6 cut(s) 98, 553, 765, 1052, 1991, 2069
BpuMI CCSGG 3 cut(s) 589, 604, 1455
BsaAI YACGTR 2 cut(s) 388, 430
BsaBI GATNNNNATC 1 cut(s) 96
BsaHI GRCGYC 3 cut(s) 285, 503, 639
BsaJI CCNNGG 7 cut(s) 29, 483, 560, 732, 1119, 1465, 2006
BsaWI WCCGGW 3 cut(s) 40, 531, 1881
Bsc4I CCNNNNNNNGG 2 cut(s) 466, 1276
Bse118I RCCGGY 2 cut(s) 543, 667
Bse1I ACTGG 6 cut(s) 229, 338, 524, 1676, 1935, 2048
Bse3DI GCAATG 4 cut(s) 142, 961, 1744, 1818
Bse8I GATNNNNATC 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 2 cut(s) 1629, 1649
BseDI CCNNGG 7 cut(s) 29, 483, 560, 732, 1119, 1465, 2006
BseGI GGATG 3 cut(s) 910, 1704, 2068
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 466, 1276
BseMI GCAATG 4 cut(s) 142, 961, 1744, 1818
BseMII CTCAG 1 cut(s) 1541
BseNI ACTGG 6 cut(s) 229, 338, 524, 1676, 1935, 2048
BseRI GAGGAG 4 cut(s) 406, 695, 698, 1967
BseX3I CGGCCG 2 cut(s) 244, 486
BseYI CCCAGC 1 cut(s) 380
Bsh1236I CGCG 2 cut(s) 447, 2085
Bsh1285I CGRYCG 2 cut(s) 247, 489
BshFI GGCC 5 cut(s) 246, 488, 667, 764, 1470
BshNI GGYRCC 2 cut(s) 82, 284
BsiEI CGRYCG 2 cut(s) 247, 489
BsiHKAI GWGCWC 4 cut(s) 65, 398, 453, 1257
BsiHKCI CYCGRG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 619, 1070
BslI CCNNNNNNNGG 2 cut(s) 466, 1276
BsmAI GTCTC 4 cut(s) 794, 839, 1013, 1632
BsmBI CGTCTC 3 cut(s) 794, 839, 1632
BsmFI GGGAC 2 cut(s) 619, 1070
BsmI GAATGC 1 cut(s) 1741
BsnI GGCC 5 cut(s) 246, 488, 667, 764, 1470
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 5 cut(s) 65, 398, 453, 1257, 1284
Bsp13I TCCGGA 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 1867
Bsp19I CCATGG 1 cut(s) 1465
Bsp68I TCGCGA 1 cut(s) 447
BspANI GGCC 5 cut(s) 246, 488, 667, 764, 1470
BspCNI CTCAG 1 cut(s) 1540
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 2 cut(s) 447, 2085
BspLI GGNNCC 3 cut(s) 84, 286, 1452
BspMAI CTGCAG 1 cut(s) 1289
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 6 cut(s) 51, 366, 450, 1498, 1610, 2140
BspQI GCTCTTC 1 cut(s) 70
BspT107I GGYRCC 2 cut(s) 82, 284
BsrDI GCAATG 4 cut(s) 142, 961, 1744, 1818
BsrFI RCCGGY 2 cut(s) 543, 667
BsrGI TGTACA 1 cut(s) 1867
BsrI ACTGG 6 cut(s) 229, 338, 524, 1676, 1935, 2048
BssAI RCCGGY 2 cut(s) 543, 667
BssECI CCNNGG 7 cut(s) 29, 483, 560, 732, 1119, 1465, 2006
BssNI GRCGYC 3 cut(s) 285, 503, 639
BssSI CACGAG 2 cut(s) 397, 1350
BssT1I CCWWGG 4 cut(s) 732, 1119, 1465, 2006
Bst2BI CACGAG 2 cut(s) 397, 1350
Bst2UI CCWGG 2 cut(s) 1629, 1649
Bst4CI ACNGT 5 cut(s) 78, 850, 1964, 2002, 2110
Bst6I CTCTTC 3 cut(s) 70, 672, 1310
BstACI GRCGYC 3 cut(s) 285, 503, 639
BstAUI TGTACA 1 cut(s) 1867
BstBAI YACGTR 2 cut(s) 388, 430
BstC8I GCNNGC 9 cut(s) 289, 293, 318, 449, 1014, 1145, 1289, 1875, 2095
BstDEI CTNAG 2 cut(s) 998, 1527
BstDSI CCRYGG 1 cut(s) 1465
BstEII GGTNACC 1 cut(s) 832
BstF5I GGATG 3 cut(s) 910, 1704, 2068
BstFNI CGCG 2 cut(s) 447, 2085
BstH2I RGCGCY 2 cut(s) 288, 780
BstHHI GCGC 6 cut(s) 287, 724, 779, 816, 1206, 2085
BstMAI GTCTC 4 cut(s) 794, 839, 1013, 1632
BstMCI CGRYCG 2 cut(s) 247, 489
BstMWI GCNNNNNNNGC 9 cut(s) 132, 288, 553, 562, 579, 822, 934, 1288, 1820
BstNI CCWGG 2 cut(s) 1629, 1649
BstNSI RCATGY 1 cut(s) 1204
BstPI GGTNACC 1 cut(s) 832
BstSCI CCNGG 5 cut(s) 587, 602, 1453, 1627, 1647
BstSFI CTRYAG 2 cut(s) 1285, 1633
BstUI CGCG 2 cut(s) 447, 2085
BstV2I GAAGAC 3 cut(s) 1377, 1413, 1491
BstX2I RGATCY 5 cut(s) 371, 1192, 1490, 1615, 1945
BstXI CCANNNNNNTGG 1 cut(s) 79
BstYI RGATCY 5 cut(s) 371, 1192, 1490, 1615, 1945
BstZI CGGCCG 2 cut(s) 244, 486
BsuI GTATCC 3 cut(s) 232, 490, 1635
BsuRI GGCC 5 cut(s) 246, 488, 667, 764, 1470
BtgI CCRYGG 1 cut(s) 1465
BtgZI GCGATG 1 cut(s) 969
BtrI CACGTC 1 cut(s) 951
BtsCI GGATG 3 cut(s) 910, 1704, 2068
BtsI GCAGTG 1 cut(s) 1930
BtsIMutI CAGTG 2 cut(s) 1930, 1998
BtuMI TCGCGA 1 cut(s) 447
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 9 cut(s) 289, 293, 318, 449, 1014, 1145, 1289, 1875, 2095
CaiI CAGNNNCTG 1 cut(s) 1654
CfoI GCGC 6 cut(s) 287, 724, 779, 816, 1206, 2085
Cfr10I RCCGGY 2 cut(s) 543, 667
Cfr13I GGNCC 3 cut(s) 729, 1469, 1651
CseI GACGC 1 cut(s) 622
Csp6I GTAC 6 cut(s) 83, 273, 431, 1170, 1868, 2011
CspCI CAANNNNNGTGG 2 cut(s) 1014, 1049
CviAII CATG 5 cut(s) 1052, 1201, 1466, 2058, 2129
CviQI GTAC 6 cut(s) 83, 273, 431, 1170, 1868, 2011
DdeI CTNAG 2 cut(s) 998, 1527
DinI GGCGCC 1 cut(s) 286
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 3 cut(s) 244, 486, 762
EagI CGGCCG 2 cut(s) 244, 486
Eam1104I CTCTTC 3 cut(s) 70, 672, 1310
EarI CTCTTC 3 cut(s) 70, 672, 1310
Ecl136II GAGCTC 1 cut(s) 451
EclXI CGGCCG 2 cut(s) 244, 486
Eco130I CCWWGG 4 cut(s) 732, 1119, 1465, 2006
Eco24I GRGCYC 2 cut(s) 453, 1284
Eco47I GGWCC 2 cut(s) 729, 1651
Eco47III AGCGCT 1 cut(s) 778
Eco52I CGGCCG 2 cut(s) 244, 486
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 1092, 1632
Eco72I CACGTG 1 cut(s) 388
Eco88I CYCGRG 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 1651
EcoO65I GGTNACC 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 1235
EcoRII CCWGG 2 cut(s) 1627, 1647
EcoT14I CCWWGG 4 cut(s) 732, 1119, 1465, 2006
EcoT38I GRGCYC 2 cut(s) 453, 1284
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 4 cut(s) 732, 1119, 1465, 2006
Esp3I CGTCTC 3 cut(s) 794, 839, 1632
FaeI CATG 5 cut(s) 1055, 1204, 1469, 2061, 2132
FalI AAGNNNNNCTT 2 cut(s) 774, 806
FaqI GGGAC 2 cut(s) 619, 1070
FatI CATG 5 cut(s) 1051, 1200, 1465, 2057, 2128
FauI CCCGC 3 cut(s) 468, 566, 1021
FbaI TGATCA 2 cut(s) 166, 1681
FblI GTMKAC 2 cut(s) 516, 979
FokI GGATG 3 cut(s) 917, 1711, 2075
FriOI GRGCYC 2 cut(s) 453, 1284
FspBI CTAG 7 cut(s) 822, 1442, 1689, 1842, 1847, 1949, 2007
GlaI GCGC 6 cut(s) 286, 723, 778, 815, 1205, 2084
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 2 cut(s) 541, 1739
HaeII RGCGCY 2 cut(s) 288, 780
HaeIII GGCC 5 cut(s) 246, 488, 667, 764, 1470
HgaI GACGC 1 cut(s) 622
HhaI GCGC 6 cut(s) 287, 724, 779, 816, 1206, 2085
Hin1I GRCGYC 3 cut(s) 285, 503, 639
Hin1II CATG 5 cut(s) 1055, 1204, 1469, 2061, 2132
Hin6I GCGC 6 cut(s) 285, 722, 777, 814, 1204, 2083
HinP1I GCGC 6 cut(s) 285, 722, 777, 814, 1204, 2083
HincII GTYRAC 4 cut(s) 517, 529, 1045, 1960
HindII GTYRAC 4 cut(s) 517, 529, 1045, 1960
HindIII AAGCTT 4 cut(s) 1145, 1704, 1875, 1967
HinfI GANTC 7 cut(s) 56, 647, 931, 1058, 1475, 1975, 2017
HphI GGTGA 6 cut(s) 161, 334, 958, 1503, 1796, 1862
Hpy166II GTNNAC 8 cut(s) 517, 529, 974, 980, 1045, 1334, 1604, 1960
Hpy188I TCNGA 5 cut(s) 226, 904, 1111, 1795, 1945
Hpy8I GTNNAC 8 cut(s) 517, 529, 974, 980, 1045, 1334, 1604, 1960
HpyAV CCTTC 3 cut(s) 962, 1760, 1879
HpyCH4III ACNGT 5 cut(s) 78, 850, 1964, 2002, 2110
HpyCH4IV ACGT 7 cut(s) 387, 429, 503, 639, 803, 950, 976
HpyCH4V TGCA 6 cut(s) 751, 954, 1287, 1359, 1823, 2113
HpyF10VI GCNNNNNNNGC 9 cut(s) 132, 288, 553, 562, 579, 822, 934, 1288, 1820
HpyF3I CTNAG 2 cut(s) 998, 1527
HpySE526I ACGT 7 cut(s) 387, 429, 503, 639, 803, 950, 976
Hsp92I GRCGYC 3 cut(s) 285, 503, 639
Hsp92II CATG 5 cut(s) 1055, 1204, 1469, 2061, 2132
HspAI GCGC 6 cut(s) 285, 722, 777, 814, 1204, 2083
KasI GGCGCC 1 cut(s) 284
Kpn2I TCCGGA 1 cut(s) 40
KpnI GGTACC 1 cut(s) 86
Ksp22I TGATCA 2 cut(s) 166, 1681
LguI GCTCTTC 1 cut(s) 70
LmnI GCTCC 9 cut(s) 393, 456, 462, 522, 591, 1183, 1260, 1741, 1811
LweI GCATC 5 cut(s) 168, 946, 1300, 1832, 2122
MaeI CTAG 7 cut(s) 822, 1442, 1689, 1842, 1847, 1949, 2007
MaeII ACGT 7 cut(s) 387, 429, 503, 639, 803, 950, 976
MaeIII GTNAC 6 cut(s) 340, 832, 946, 993, 1925, 2067
MflI RGATCY 5 cut(s) 371, 1192, 1490, 1615, 1945
MhlI GDGCHC 5 cut(s) 65, 398, 453, 1257, 1284
MlsI TGGCCA 1 cut(s) 764
MluNI TGGCCA 1 cut(s) 764
Mly113I GGCGCC 1 cut(s) 285
MlyI GAGTC 2 cut(s) 641, 1052
MmeI TCCRAC 2 cut(s) 249, 1567
Mox20I TGGCCA 1 cut(s) 764
MroI TCCGGA 1 cut(s) 40
MscI TGGCCA 1 cut(s) 764
MseI TTAA 3 cut(s) 1008, 1398, 2147
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 4 cut(s) 129, 218, 282, 316
MspR9I CCNGG 5 cut(s) 589, 604, 1455, 1629, 1649
Mva1269I GAATGC 1 cut(s) 1741
MvaI CCWGG 2 cut(s) 1629, 1649
MvnI CGCG 2 cut(s) 447, 2085
MwoI GCNNNNNNNGC 9 cut(s) 132, 288, 553, 562, 579, 822, 934, 1288, 1820
NarI GGCGCC 1 cut(s) 285
NciI CCSGG 3 cut(s) 589, 604, 1455
NcoI CCATGG 1 cut(s) 1465
NlaIII CATG 5 cut(s) 1055, 1204, 1469, 2061, 2132
NlaIV GGNNCC 3 cut(s) 84, 286, 1452
NmeAIII GCCGAG 2 cut(s) 464, 585
NmuCI GTSAC 4 cut(s) 340, 946, 993, 1925
NruI TCGCGA 1 cut(s) 447
NspI RCATGY 1 cut(s) 1204
PaqCI CACCTGC 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 5 cut(s) 410, 413, 522, 656, 659
PctI GAATGC 1 cut(s) 1741
PfeI GAWTC 5 cut(s) 56, 931, 1475, 1975, 2017
PflFI GACNNNGTC 1 cut(s) 850
PfoI TCCNGGA 1 cut(s) 602
PleI GAGTC 2 cut(s) 641, 1052
PluTI GGCGCC 1 cut(s) 288
PmaCI CACGTG 1 cut(s) 388
PmlI CACGTG 1 cut(s) 388
PpsI GAGTC 2 cut(s) 641, 1052
Ppu21I YACGTR 2 cut(s) 388, 430
PpuMI RGGWCCY 1 cut(s) 1651
PsiI TTATAA 1 cut(s) 1583
Psp124BI GAGCTC 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 1651
Psp6I CCWGG 2 cut(s) 1627, 1647
PspCI CACGTG 1 cut(s) 388
PspEI GGTNACC 1 cut(s) 832
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 2 cut(s) 1627, 1647
PspN4I GGNNCC 3 cut(s) 84, 286, 1452
PspPI GGNCC 3 cut(s) 729, 1469, 1651
PspPPI RGGWCCY 1 cut(s) 1651
PstI CTGCAG 1 cut(s) 1289
PstNI CAGNNNCTG 1 cut(s) 1654
PsuI RGATCY 5 cut(s) 371, 1192, 1490, 1615, 1945
PsyI GACNNNGTC 1 cut(s) 850
PvuII CAGCTG 2 cut(s) 218, 316
RruI TCGCGA 1 cut(s) 447
RsaI GTAC 6 cut(s) 84, 274, 432, 1171, 1869, 2012
RsaNI GTAC 6 cut(s) 83, 273, 431, 1170, 1868, 2011
SacI GAGCTC 1 cut(s) 453
SalI GTCGAC 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 3 cut(s) 1008, 1398, 2147
Sau96I GGNCC 3 cut(s) 729, 1469, 1651
SchI GAGTC 2 cut(s) 641, 1052
ScrFI CCNGG 5 cut(s) 589, 604, 1455, 1629, 1649
SduI GDGCHC 5 cut(s) 65, 398, 453, 1257, 1284
SfaNI GCATC 5 cut(s) 168, 946, 1300, 1832, 2122
SfcI CTRYAG 2 cut(s) 1285, 1633
SfoI GGCGCC 1 cut(s) 286
SinI GGWCC 2 cut(s) 729, 1651
SmlI CTYRAG 6 cut(s) 113, 568, 780, 1067, 1970, 2048
SmoI CTYRAG 6 cut(s) 113, 568, 780, 1067, 1970, 2048
SspDI GGCGCC 1 cut(s) 284
SspI AATATT 1 cut(s) 919
SspMI CTAG 7 cut(s) 822, 1442, 1689, 1842, 1847, 1949, 2007
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 5 cut(s) 587, 602, 1453, 1627, 1647
StyI CCWWGG 4 cut(s) 732, 1119, 1465, 2006
TaaI ACNGT 5 cut(s) 78, 850, 1964, 2002, 2110
TaiI ACGT 7 cut(s) 390, 432, 506, 642, 806, 953, 979
TaqI TCGA 5 cut(s) 54, 474, 516, 1481, 2022
TatI WGTACW 1 cut(s) 1867
TauI GCSGC 4 cut(s) 51, 132, 246, 285
TfiI GAWTC 5 cut(s) 56, 931, 1475, 1975, 2017
Tru1I TTAA 3 cut(s) 1008, 1398, 2147
Tru9I TTAA 3 cut(s) 1008, 1398, 2147
TscAI CASTG 2 cut(s) 1930, 2005
TseFI GTSAC 4 cut(s) 340, 946, 993, 1925
Tsp45I GTSAC 4 cut(s) 340, 946, 993, 1925
TspDTI ATGAA 2 cut(s) 92, 153
TspRI CASTG 2 cut(s) 1930, 2005
Tth111I GACNNNGTC 1 cut(s) 850
VpaK11BI GGWCC 2 cut(s) 729, 1651
XapI RAATTY 4 cut(s) 209, 1235, 1521, 1548
XbaI TCTAGA 1 cut(s) 1948
XceI RCATGY 1 cut(s) 1204
XmaJI CCTAGG 1 cut(s) 2006
XmiI GTMKAC 2 cut(s) 516, 979
XspI CTAG 7 cut(s) 822, 1442, 1689, 1842, 1847, 1949, 2007
ZraI GACGTC 2 cut(s) 504, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.