Rorug07G0289200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0008785
Physical Location & Seq
Forward (+)
28171097 .. 28186316
15220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0289200.1

Sequence Viewer

Length: 984 bp
ATGGAAGAAGGTTGTCTCTTGGTCTGGAAATCTGGTCAGTGGGTTTACTTAAAGTATAACGGATTAAGTGAATGGCAAAGGGATTCTGTCAGTGGGTTTACTTATGAATTGGAACTACGAACTGGAACACAAAGGTATACAGCACTGGTTGAGCTAAATGTGGTGCAAGCAGCCAAGGATATGGAGAAAGTGTTGGCTGTTTCCTTGAGTCAAATTGCAGAAGATGAACCAGATTTACTATCAGTAGGGCAAAACCCTGCATCATCATATCCCTTCTTCTCCAAGGAATTTTTACGTCTCCATGGCCGCGATCTCTTCTCCTGTGCTGCCAACTGGTTTCTTGTTGACGTTGTCTTCTACAGCAGCAACCTATTCCAGTCTCAAATATATAGAAGATATATCGACCCAAAATACCCAAAAAAGGTCAATCTCTACCAAGATGCTTTGCATGTTGCTGAGTTGCAAGCAATTGTGACAATATGCTCAACAATTCCAGGATATTGGTTCAGTGTCTTCTTCATTGATCGAATTGGAAGGCGAAAAATTCAAATGATGGGGTTTTTCGTCATGGCACTTGTTTATTTCTCGATTGGGATACCCTACAAAACTCACTGGGCAAAAAATACAGATAAAGGTTTCATGGTCCTCTATGGCCTCACTTTCTTCTTTGCAAATTTTGGACCAAATACTACCACTTTTATAGTGCCTGCTGAGCTTTTCCCGGCGAGGTTTAGGTCAACTTGTCATGGGATTTCCGGGGCTTCGGGGAAGGTTGGCGCCTTGATCGGATCAATTGGATTTCTATGGGTTGCACATGGTCAAAATGAGGAGGATAAAAAGACGAAAGAGATCAAGAGGTCGTTGATTGGTTTAGGTGTAGTTTGTATTCTGGGATTGGTGGTAACGTATCTCTTCACACCCGAAACTATGGGAAGATCACTAGAAGAGAATGAGAACGAGAATGGGAATGAACAAAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

327

Amino Acids

37.07

Weight (kDa)

6.54

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 151 - 309 9.9e-09 Major Facilitator Superfamily
Sugar_tr PF00083 154 - 318 4e-23 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 776
AccI GTMKAC 1 cut(s) 137
AccII CGCG 1 cut(s) 309
AciI CCGC 1 cut(s) 307
AclWI GGATC 1 cut(s) 796
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 3 cut(s) 287, 543, 673
AcyI GRCGYC 1 cut(s) 777
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 1 cut(s) 548
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 2 cut(s) 154, 715
AluI AGCT 2 cut(s) 154, 715
Alw26I GTCTC 3 cut(s) 20, 302, 384
AlwI GGATC 1 cut(s) 796
AoxI GGCC 2 cut(s) 304, 652
ApeKI GCWGC 3 cut(s) 170, 326, 363
ApoI RAATTY 3 cut(s) 287, 543, 673
AspLEI GCGC 1 cut(s) 779
AspS9I GGNCC 2 cut(s) 643, 680
AsuC2I CCSGG 2 cut(s) 722, 757
AvaII GGWCC 2 cut(s) 643, 680
BanI GGYRCC 1 cut(s) 776
BbsI GAAGAC 2 cut(s) 346, 505
BbvI GCAGC 3 cut(s) 182, 313, 375
BccI CCATC 1 cut(s) 547
BciT130I CCWGG 1 cut(s) 495
BciVI GTATCC 1 cut(s) 588
BcnI CCSGG 2 cut(s) 722, 757
BcoDI GTCTC 3 cut(s) 20, 302, 384
BfaI CTAG 1 cut(s) 941
BfmI CTRYAG 1 cut(s) 358
BfoI RGCGCY 1 cut(s) 780
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 4 cut(s) 171, 307, 327, 364
BlpI GCTNAGC 1 cut(s) 711
BlsI GCNGC 4 cut(s) 172, 308, 328, 365
Bme1390I CCNGG 3 cut(s) 495, 722, 757
Bme18I GGWCC 2 cut(s) 643, 680
BmgT120I GGNCC 2 cut(s) 643, 680
BmiI GGNNCC 1 cut(s) 778
BmrFI CCNGG 3 cut(s) 495, 722, 757
BmrI ACTGGG 1 cut(s) 622
BmsI GCATC 2 cut(s) 269, 430
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 2 cut(s) 346, 505
Bpu1102I GCTNAGC 1 cut(s) 711
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 2 cut(s) 722, 757
BsaHI GRCGYC 1 cut(s) 777
BsaJI CCNNGG 4 cut(s) 174, 282, 301, 756
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 5 cut(s) 127, 150, 338, 376, 617
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 4 cut(s) 174, 282, 301, 756
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 447, 702
BseNI ACTGG 5 cut(s) 127, 150, 338, 376, 617
BseRI GAGGAG 1 cut(s) 842
BseXI GCAGC 3 cut(s) 182, 313, 375
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 306, 654
BshNI GGYRCC 1 cut(s) 776
BsiSI CCGG 2 cut(s) 722, 756
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 3 cut(s) 20, 302, 384
BsmBI CGTCTC 1 cut(s) 302
BsnI GGCC 2 cut(s) 306, 654
Bsp143I GATC 6 cut(s) 310, 523, 783, 788, 849, 935
Bsp1720I GCTNAGC 1 cut(s) 711
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 1 cut(s) 307
BspANI GGCC 2 cut(s) 306, 654
BspCNI CTCAG 2 cut(s) 448, 703
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 778
BspPI GGATC 1 cut(s) 796
BspT107I GGYRCC 1 cut(s) 776
BsrI ACTGG 5 cut(s) 127, 150, 338, 376, 617
BssECI CCNNGG 4 cut(s) 174, 282, 301, 756
BssMI GATC 6 cut(s) 310, 523, 783, 788, 849, 935
BssNAI GTATAC 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 777
BssT1I CCWWGG 3 cut(s) 174, 282, 301
Bst1107I GTATAC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 495
Bst6I CTCTTC 3 cut(s) 320, 917, 939
BstACI GRCGYC 1 cut(s) 777
BstC8I GCNNGC 3 cut(s) 168, 465, 708
BstDEI CTNAG 2 cut(s) 456, 711
BstDSI CCRYGG 1 cut(s) 301
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 1 cut(s) 780
BstHHI GCGC 1 cut(s) 779
BstKTI GATC 6 cut(s) 313, 526, 786, 791, 852, 938
BstMAI GTCTC 3 cut(s) 20, 302, 384
BstMBI GATC 6 cut(s) 310, 523, 783, 788, 849, 935
BstMWI GCNNNNNNNGC 1 cut(s) 712
BstNI CCWGG 1 cut(s) 495
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 3 cut(s) 493, 720, 755
BstSFI CTRYAG 1 cut(s) 358
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 182, 313, 375
BstV2I GAAGAC 2 cut(s) 346, 505
BstXI CCANNNNNNTGG 2 cut(s) 181, 501
BstZ17I GTATAC 1 cut(s) 138
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 2 cut(s) 306, 654
BtgI CCRYGG 1 cut(s) 301
BtsIMutI CAGTG 5 cut(s) 44, 97, 143, 514, 610
Cac8I GCNNGC 3 cut(s) 168, 465, 708
CfoI GCGC 1 cut(s) 779
Cfr13I GGNCC 2 cut(s) 643, 680
CviAII CATG 7 cut(s) 302, 449, 568, 640, 746, 815, 981
CviJI RGCY 7 cut(s) 154, 173, 197, 306, 654, 715, 761
CviKI_1 RGCY 7 cut(s) 154, 173, 197, 306, 654, 715, 761
DdeI CTNAG 2 cut(s) 456, 711
DinI GGCGCC 1 cut(s) 778
DpnI GATC 6 cut(s) 312, 525, 785, 790, 851, 937
DpnII GATC 6 cut(s) 310, 523, 783, 788, 849, 935
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 3 cut(s) 320, 917, 939
EarI CTCTTC 3 cut(s) 320, 917, 939
Eco130I CCWWGG 3 cut(s) 174, 282, 301
Eco47I GGWCC 2 cut(s) 643, 680
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 3 cut(s) 174, 282, 301
EcoT22I ATGCAT 1 cut(s) 982
EgeI GGCGCC 1 cut(s) 778
EheI GGCGCC 1 cut(s) 778
ErhI CCWWGG 3 cut(s) 174, 282, 301
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 7 cut(s) 305, 452, 571, 643, 749, 818, 984
FatI CATG 7 cut(s) 301, 448, 567, 639, 745, 814, 980
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 4 cut(s) 171, 307, 327, 364
Fsp4HI GCNGC 4 cut(s) 171, 307, 327, 364
FspBI CTAG 1 cut(s) 941
GlaI GCGC 1 cut(s) 778
GluI GCNGC 4 cut(s) 171, 307, 327, 364
HaeII RGCGCY 1 cut(s) 780
HaeIII GGCC 2 cut(s) 306, 654
HapII CCGG 2 cut(s) 722, 756
HhaI GCGC 1 cut(s) 779
Hin1I GRCGYC 1 cut(s) 777
Hin1II CATG 7 cut(s) 305, 452, 571, 643, 749, 818, 984
Hin6I GCGC 1 cut(s) 777
HinP1I GCGC 1 cut(s) 777
HincII GTYRAC 2 cut(s) 346, 738
HindII GTYRAC 2 cut(s) 346, 738
HinfI GANTC 2 cut(s) 83, 208
HpaII CCGG 2 cut(s) 722, 756
Hpy166II GTNNAC 5 cut(s) 46, 99, 138, 346, 738
Hpy188I TCNGA 1 cut(s) 788
Hpy188III TCNNGA 3 cut(s) 25, 586, 853
Hpy8I GTNNAC 5 cut(s) 46, 99, 138, 346, 738
HpyAV CCTTC 3 cut(s) 283, 528, 763
HpyCH4IV ACGT 3 cut(s) 295, 348, 905
HpyCH4V TGCA 8 cut(s) 166, 218, 260, 448, 463, 671, 812, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 712
HpyF3I CTNAG 2 cut(s) 456, 711
HpySE526I ACGT 3 cut(s) 295, 348, 905
Hsp92I GRCGYC 1 cut(s) 777
Hsp92II CATG 7 cut(s) 305, 452, 571, 643, 749, 818, 984
HspAI GCGC 1 cut(s) 777
KasI GGCGCC 1 cut(s) 776
Kzo9I GATC 6 cut(s) 310, 523, 783, 788, 849, 935
Lsp1109I GCAGC 3 cut(s) 182, 313, 375
LweI GCATC 2 cut(s) 269, 430
MaeI CTAG 1 cut(s) 941
MaeII ACGT 3 cut(s) 295, 348, 905
MaeIII GTNAC 2 cut(s) 472, 901
MalI GATC 6 cut(s) 312, 525, 785, 790, 851, 937
MboI GATC 6 cut(s) 310, 523, 783, 788, 849, 935
MfeI CAATTG 2 cut(s) 468, 792
MluCI AATT 9 cut(s) 107, 213, 287, 468, 489, 528, 543, 673, 792
Mly113I GGCGCC 1 cut(s) 777
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 6 cut(s) 656, 665, 720, 820, 823, 849
Mph1103I ATGCAT 1 cut(s) 982
MseI TTAA 2 cut(s) 50, 65
MspI CCGG 2 cut(s) 722, 756
MspR9I CCNGG 3 cut(s) 495, 722, 757
MunI CAATTG 2 cut(s) 468, 792
MvaI CCWGG 1 cut(s) 495
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 712
NarI GGCGCC 1 cut(s) 777
NciI CCSGG 2 cut(s) 722, 757
NcoI CCATGG 1 cut(s) 301
NdeII GATC 6 cut(s) 310, 523, 783, 788, 849, 935
NlaIII CATG 7 cut(s) 305, 452, 571, 643, 749, 818, 984
NlaIV GGNNCC 1 cut(s) 778
NmuCI GTSAC 1 cut(s) 472
NsiI ATGCAT 1 cut(s) 982
NspI RCATGY 1 cut(s) 452
PfeI GAWTC 1 cut(s) 83
PflFI GACNNNGTC 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 4 cut(s) 172, 308, 328, 365
PleI GAGTC 1 cut(s) 216
PluTI GGCGCC 1 cut(s) 780
PpsI GAGTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 778
PspPI GGNCC 2 cut(s) 643, 680
PsrI GAACNNNNNNTAC 2 cut(s) 219, 251
PsyI GACNNNGTC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 50, 65
SatI GCNGC 4 cut(s) 171, 307, 327, 364
Sau3AI GATC 6 cut(s) 310, 523, 783, 788, 849, 935
Sau96I GGNCC 2 cut(s) 643, 680
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 3 cut(s) 495, 722, 757
SfaNI GCATC 2 cut(s) 269, 430
SfcI CTRYAG 1 cut(s) 358
SfoI GGCGCC 1 cut(s) 778
SinI GGWCC 2 cut(s) 643, 680
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 9 cut(s) 107, 213, 287, 468, 489, 528, 543, 673, 792
SsiI CCGC 1 cut(s) 307
SspDI GGCGCC 1 cut(s) 776
SspMI CTAG 1 cut(s) 941
StyD4I CCNGG 3 cut(s) 493, 720, 755
StyI CCWWGG 3 cut(s) 174, 282, 301
TaiI ACGT 3 cut(s) 298, 351, 908
TaqI TCGA 3 cut(s) 402, 526, 587
TasI AATT 9 cut(s) 107, 213, 287, 468, 489, 528, 543, 673, 792
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 50, 65
Tru9I TTAA 2 cut(s) 50, 65
TscAI CASTG 5 cut(s) 44, 97, 150, 514, 617
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 3 cut(s) 170, 326, 363
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 5 cut(s) 120, 240, 508, 628, 984
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 5 cut(s) 44, 97, 150, 514, 617
Tth111I GACNNNGTC 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 643, 680
XapI RAATTY 3 cut(s) 287, 543, 673
XceI RCATGY 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 1 cut(s) 941
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.