RchiOBHm_Chr7g0239831

Metallophosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013686
Physical Location & Seq
Reverse (-)
65588787 .. 65592984
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21496

Sequence Viewer

Length: 1158 bp
ATGGCGGTTGCCTTGAAGCCATTGTTGCCCATCATCATACTCTCCTCTCTGCTCCTCTACGAAGAGTGGGTCTCAACTCCCTCATGCAAACCCGAACCCGACCCGGCCCAGGCCCATGCCCACCCCCACCACCCGGACGACCTCAAGGTCATGATGGTCGCCAACCTCCTCCTCCTCGGCTCCGAATCCGGCTACTTCGACCTCCTCTTCCGCGACTACTACACCTCCAAATTCTTCACGAAATCGTTCCGGACTCTCAGGCCCGATATGCTCCTGGTCCTCGGCGACATCTCGGCGCGTGGCCACCACTTGCGGAGGAGCGAGTACGTCTCGGTGATCCGTCAGTTCCACCGGGTCCTGGGCCCGTTTCTGGACCTCCCGCTCCACGTGGTTCTCGGCGACCGGGACGTCGGAGTCTGCGACGGGCTGAGTGAGGACTCGGTGGGCTGGATCGCGAGGAGGTTGCCGGGCCTGGACCCGGCCGGGTGCGGAGCCTTTGAGATTGGGAACGTCAGCTTCGTGTCGCTAAACGCCGTCGCTTTGCTGTGCGGGAATAGTGAGGTGAGGTTCAGTGTGGAGAAGGCGGTGGAGAGAGAGAGCGTGGATTTTCGACTCGAAAATGAGGGGGGAAGTGGAGATAGAGAGAGGAAGGAGAGGGTTTATGAGTTCGGGTGGAGAGAGAATGCAATATCCTCCGGGTCTGGACCTGTGGTTTTGCTTCACTTTCCGTTGAGCCGAAATGTGAGTACTACTGATTTTGATGGGAGTCCTAATGTTTTCGACGGCAGGGAGGATGTTGGTAGAGGGCCGTACGATTTGTTACAGAAGCTACCGCCAAATGCTACTGAATACATATTTCAAGCTCTCAAGCCAAGGATTGTTTTCAGTGCCCACACTCAGGAATTCTATGATCATTTCCATCCAGATGGAACCCGTGAGGTTACTATTCCAGCCATGACATGGAATGCGAGGGATGATCCTGGATTTGTTATTGCCACTTTCCGAAGGAATGAAGGAGCAGTAAGCATCAGCTATTGCTCTCTTGCTAGGGAATCTCACATACTTTTAGCCTATGCATCTCTTCTGATTATTTCGGTATCAATGCTGGCTTTCTCAAGCACACCTAGTTTAAGATCTTTCAAGACAATGATAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

385

Amino Acids

42.92

Weight (kDa)

5.82

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37850 FvH4_5g37850
malus_domestica MD15G1365100.v1.1
prunus_persica Prupe.1G513100_v2.0.a1
pyrus_communis pycom15g32740
rosa_chinensis RchiOBHm_Chr7g0239831
rosa_laevigata RLG00000000727
rosa_multiflora Rmu_sc0000540.1_g000066 Rmu_sc0007193.1_g000009
rosa_roxburghii Rroxscaffold_3G00220780
rosa_rugosa Rorug07G0329600 Rorug07G0329700 Rorug07G0329800
rosa_samantha Rh7AG483800 Rh7BG456800 Rh7CG501300 Rh7DG469500
rosa_wichuraiana Rw7G040580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 146, 407, 413
AatII GACGTC 1 cut(s) 411
AccB7I CCANNNNNTGG 1 cut(s) 960
AccBSI CCGCTC 1 cut(s) 382
AccII CGCG 3 cut(s) 213, 298, 455
AccIII TCCGGA 1 cut(s) 249
AciI CCGC 8 cut(s) 5, 211, 313, 380, 489, 549, 584, 833
AclWI GGATC 3 cut(s) 331, 458, 971
AcoI YGGCCR 2 cut(s) 301, 480
AcsI RAATTY 2 cut(s) 230, 902
AcvI CACGTG 1 cut(s) 388
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 3 cut(s) 326, 748, 812
AfiI CCNNNNNNNGG 7 cut(s) 109, 133, 358, 370, 478, 898, 960
AgsI TTSAA 3 cut(s) 16, 860, 1141
AjnI CCWGG 5 cut(s) 108, 273, 357, 471, 979
AluBI AGCT 4 cut(s) 516, 829, 863, 1032
AluI AGCT 4 cut(s) 516, 829, 863, 1032
Alw26I GTCTC 2 cut(s) 76, 334
AlwI GGATC 3 cut(s) 331, 458, 971
Aor13HI TCCGGA 1 cut(s) 249
AoxI GGCC 8 cut(s) 105, 111, 260, 301, 361, 469, 480, 806
ApaI GGGCCC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 230, 902
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 298
AsuC2I CCSGG 8 cut(s) 104, 134, 353, 404, 468, 479, 484, 697
AsuHPI GGTGA 2 cut(s) 346, 574
AvaII GGWCC 5 cut(s) 277, 355, 373, 475, 704
BaeGI GKGCMC 2 cut(s) 365, 892
BalI TGGCCA 1 cut(s) 303
BanII GRGCYC 1 cut(s) 365
BbrPI CACGTG 1 cut(s) 388
BccI CCATC 5 cut(s) 38, 148, 755, 920, 927
BceAI ACGGC 3 cut(s) 518, 793, 799
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciT130I CCWGG 5 cut(s) 110, 275, 359, 473, 981
BclI TGATCA 1 cut(s) 910
BcnI CCSGG 8 cut(s) 104, 134, 353, 404, 468, 479, 484, 697
BcoDI GTCTC 2 cut(s) 76, 334
BfaI CTAG 2 cut(s) 1047, 1125
BglII AGATCT 1 cut(s) 1133
BmcAI AGTACT 1 cut(s) 748
Bme18I GGWCC 5 cut(s) 277, 355, 373, 475, 704
BmiI GGNNCC 6 cut(s) 181, 356, 363, 477, 493, 931
BmsI GCATC 2 cut(s) 1035, 1085
BplI GAGNNNNNCTC 4 cut(s) 56, 88, 314, 346
BpuEI CTTGAG 3 cut(s) 128, 851, 1099
BpuMI CCSGG 8 cut(s) 104, 134, 353, 404, 468, 479, 484, 697
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 5 cut(s) 108, 175, 280, 358, 872
BsaWI WCCGGW 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 7 cut(s) 109, 133, 358, 370, 478, 898, 960
BseAI TCCGGA 1 cut(s) 249
BseBI CCWGG 5 cut(s) 110, 275, 359, 473, 981
BseDI CCNNGG 5 cut(s) 108, 175, 280, 358, 872
BseGI GGATG 3 cut(s) 799, 919, 979
BseLI CCNNNNNNNGG 7 cut(s) 109, 133, 358, 370, 478, 898, 960
BseMII CTCAG 3 cut(s) 271, 419, 911
BseRI GAGGAG 8 cut(s) 34, 44, 158, 161, 164, 194, 331, 472
BseSI GKGCMC 2 cut(s) 365, 892
BseX3I CGGCCG 1 cut(s) 480
Bsh1236I CGCG 3 cut(s) 213, 298, 455
Bsh1285I CGRYCG 2 cut(s) 403, 483
BshFI GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
BsiEI CGRYCG 2 cut(s) 403, 483
BsiWI CGTACG 1 cut(s) 810
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 7 cut(s) 109, 133, 358, 370, 478, 898, 960
BsmAI GTCTC 2 cut(s) 76, 334
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 2 cut(s) 688, 970
BsnI GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
Bso31I GGTCTC 1 cut(s) 76
Bsp120I GGGCCC 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 365, 892
Bsp13I TCCGGA 1 cut(s) 249
Bsp143I GATC 5 cut(s) 336, 450, 910, 976, 1133
Bsp68I TCGCGA 1 cut(s) 455
BspACI CCGC 8 cut(s) 5, 211, 313, 380, 489, 549, 584, 833
BspANI GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
BspCNI CTCAG 3 cut(s) 270, 420, 910
BspEI TCCGGA 1 cut(s) 249
BspFNI CGCG 3 cut(s) 213, 298, 455
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 6 cut(s) 181, 356, 363, 477, 493, 931
BspPI GGATC 3 cut(s) 331, 458, 971
BspTNI GGTCTC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 382
BssECI CCNNGG 5 cut(s) 108, 175, 280, 358, 872
BssMI GATC 5 cut(s) 336, 450, 910, 976, 1133
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 872
Bst2UI CCWGG 5 cut(s) 110, 275, 359, 473, 981
Bst6I CTCTTC 3 cut(s) 57, 212, 1086
BstACI GRCGYC 1 cut(s) 408
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 1107
BstDEI CTNAG 3 cut(s) 257, 428, 897
BstF5I GGATG 3 cut(s) 799, 919, 979
BstFNI CGCG 3 cut(s) 213, 298, 455
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 5 cut(s) 339, 453, 913, 979, 1136
BstMAI GTCTC 2 cut(s) 76, 334
BstMBI GATC 5 cut(s) 336, 450, 910, 976, 1133
BstMCI CGRYCG 2 cut(s) 403, 483
BstMWI GCNNNNNNNGC 2 cut(s) 25, 268
BstNI CCWGG 5 cut(s) 110, 275, 359, 473, 981
BstSLI GKGCMC 2 cut(s) 365, 892
BstUI CGCG 3 cut(s) 213, 298, 455
BstX2I RGATCY 1 cut(s) 1133
BstXI CCANNNNNNTGG 1 cut(s) 926
BstYI RGATCY 1 cut(s) 1133
BstZI CGGCCG 1 cut(s) 480
BsuRI GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
BtsCI GGATG 3 cut(s) 799, 919, 979
BtsIMutI CAGTG 2 cut(s) 577, 892
BtuMI TCGCGA 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 1107
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 298
Csp6I GTAC 3 cut(s) 325, 747, 811
CviAII CATG 5 cut(s) 84, 116, 151, 955, 960
CviQI GTAC 3 cut(s) 325, 747, 811
DdeI CTNAG 3 cut(s) 257, 428, 897
DpnI GATC 5 cut(s) 338, 452, 912, 978, 1135
DpnII GATC 5 cut(s) 336, 450, 910, 976, 1133
DrdI GACNNNNNNGTC 3 cut(s) 146, 407, 413
DseDI GACNNNNNNGTC 3 cut(s) 146, 407, 413
EaeI YGGCCR 2 cut(s) 301, 480
EagI CGGCCG 1 cut(s) 480
Eam1104I CTCTTC 3 cut(s) 57, 212, 1086
EarI CTCTTC 3 cut(s) 57, 212, 1086
EclXI CGGCCG 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 872
Eco24I GRGCYC 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 5 cut(s) 277, 355, 373, 475, 704
Eco52I CGGCCG 1 cut(s) 480
Eco72I CACGTG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 902
EcoRII CCWGG 5 cut(s) 108, 273, 357, 471, 979
EcoT14I CCWWGG 1 cut(s) 872
EcoT22I ATGCAT 1 cut(s) 1078
EcoT38I GRGCYC 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 872
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 5 cut(s) 87, 119, 154, 958, 963
FaqI GGGAC 1 cut(s) 419
FatI CATG 5 cut(s) 83, 115, 150, 954, 959
FauI CCCGC 2 cut(s) 387, 542
FbaI TGATCA 1 cut(s) 910
FokI GGATG 3 cut(s) 806, 906, 986
FriOI GRGCYC 1 cut(s) 365
FspBI CTAG 2 cut(s) 1047, 1125
GlaI GCGC 1 cut(s) 297
HaeIII GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 5 cut(s) 87, 119, 154, 958, 963
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 7 cut(s) 185, 253, 414, 437, 612, 766, 1052
HphI GGTGA 2 cut(s) 346, 574
Hpy188I TCNGA 4 cut(s) 184, 413, 1004, 1086
Hpy188III TCNNGA 9 cut(s) 151, 238, 250, 371, 454, 702, 899, 923, 1141
Hpy99I CGWCG 4 cut(s) 413, 425, 539, 785
HpyAV CCTTC 4 cut(s) 574, 643, 999, 1007
HpyCH4IV ACGT 4 cut(s) 327, 387, 408, 510
HpyCH4V TGCA 3 cut(s) 87, 686, 1076
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 268
HpyF3I CTNAG 3 cut(s) 257, 428, 897
HpySE526I ACGT 4 cut(s) 327, 387, 408, 510
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 5 cut(s) 87, 119, 154, 958, 963
HspAI GCGC 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 910
Kzo9I GATC 5 cut(s) 336, 450, 910, 976, 1133
LmnI GCTCC 7 cut(s) 57, 185, 276, 318, 387, 491, 1016
LweI GCATC 2 cut(s) 1035, 1085
MaeI CTAG 2 cut(s) 1047, 1125
MaeII ACGT 4 cut(s) 327, 387, 408, 510
MaeIII GTNAC 2 cut(s) 819, 940
MalI GATC 5 cut(s) 338, 452, 912, 978, 1135
MbiI CCGCTC 1 cut(s) 382
MboI GATC 5 cut(s) 336, 450, 910, 976, 1133
MboII GAAGA 4 cut(s) 74, 199, 226, 1073
MflI RGATCY 1 cut(s) 1133
MhlI GDGCHC 2 cut(s) 365, 892
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 2 cut(s) 230, 902
MluNI TGGCCA 1 cut(s) 303
MlyI GAGTC 5 cut(s) 247, 423, 431, 606, 775
MmeI TCCRAC 1 cut(s) 391
Mox20I TGGCCA 1 cut(s) 303
Mph1103I ATGCAT 1 cut(s) 1078
MroI TCCGGA 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 245
MscI TGGCCA 1 cut(s) 303
MseI TTAA 1 cut(s) 1130
MslI CAYNNNNRTG 1 cut(s) 924
Msp20I TGGCCA 1 cut(s) 303
Mva1269I GAATGC 2 cut(s) 688, 970
MvaI CCWGG 5 cut(s) 110, 275, 359, 473, 981
MvnI CGCG 3 cut(s) 213, 298, 455
MwoI GCNNNNNNNGC 2 cut(s) 25, 268
NciI CCSGG 8 cut(s) 104, 134, 353, 404, 468, 479, 484, 697
NdeII GATC 5 cut(s) 336, 450, 910, 976, 1133
NlaIII CATG 5 cut(s) 87, 119, 154, 958, 963
NlaIV GGNNCC 6 cut(s) 181, 356, 363, 477, 493, 931
NmeAIII GCCGAG 4 cut(s) 156, 261, 272, 375
NruI TCGCGA 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 1078
PagI TCATGA 1 cut(s) 150
PcsI WCGNNNNNNNCGW 2 cut(s) 417, 516
PctI GAATGC 2 cut(s) 688, 970
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 185, 1052
Pfl23II CGTACG 1 cut(s) 810
PflMI CCANNNNNTGG 1 cut(s) 960
PfoI TCCNGGA 1 cut(s) 979
PleI GAGTC 5 cut(s) 247, 422, 431, 606, 774
PmaCI CACGTG 1 cut(s) 388
PmlI CACGTG 1 cut(s) 388
PpsI GAGTC 5 cut(s) 247, 422, 431, 606, 774
Ppu21I YACGTR 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 5 cut(s) 108, 273, 357, 471, 979
PspCI CACGTG 1 cut(s) 388
PspGI CCWGG 5 cut(s) 108, 273, 357, 471, 979
PspLI CGTACG 1 cut(s) 810
PspN4I GGNNCC 6 cut(s) 181, 356, 363, 477, 493, 931
PspOMI GGGCCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 355
PsuI RGATCY 1 cut(s) 1133
RruI TCGCGA 1 cut(s) 455
RsaI GTAC 3 cut(s) 326, 748, 812
RsaNI GTAC 3 cut(s) 325, 747, 811
RseI CAYNNNNRTG 1 cut(s) 924
SaqAI TTAA 1 cut(s) 1130
Sau3AI GATC 5 cut(s) 336, 450, 910, 976, 1133
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 5 cut(s) 247, 423, 431, 606, 775
SduI GDGCHC 2 cut(s) 365, 892
SfaNI GCATC 2 cut(s) 1035, 1085
SinI GGWCC 5 cut(s) 277, 355, 373, 475, 704
SmiMI CAYNNNNRTG 1 cut(s) 924
SmlI CTYRAG 3 cut(s) 143, 866, 1114
SmoI CTYRAG 3 cut(s) 143, 866, 1114
Sse9I AATT 2 cut(s) 230, 902
SsiI CCGC 8 cut(s) 5, 211, 313, 380, 489, 549, 584, 833
SspMI CTAG 2 cut(s) 1047, 1125
StyI CCWWGG 1 cut(s) 872
TaiI ACGT 4 cut(s) 330, 390, 411, 513
TaqI TCGA 4 cut(s) 198, 610, 615, 780
TasI AATT 2 cut(s) 230, 902
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 2 cut(s) 185, 1052
Tru1I TTAA 1 cut(s) 1130
Tru9I TTAA 1 cut(s) 1130
TscAI CASTG 2 cut(s) 577, 892
TspDTI ATGAA 1 cut(s) 1026
TspGWI ACGGA 2 cut(s) 329, 717
TspRI CASTG 2 cut(s) 577, 892
Van91I CCANNNNNTGG 1 cut(s) 960
VpaK11BI GGWCC 5 cut(s) 277, 355, 373, 475, 704
XapI RAATTY 2 cut(s) 230, 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 957
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 2 cut(s) 1047, 1125
ZraI GACGTC 1 cut(s) 409
ZrmI AGTACT 1 cut(s) 748
Zsp2I ATGCAT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.