Rmu_sc0007193.1_g000009

Metallophosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007193.1
OG0013686
Physical Location & Seq
Reverse (-)
52382 .. 54940
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007193.1_g000009.1.cds

Sequence Viewer

Length: 676 bp
cgggtgcggagcctttgagattgggaacgtcagcttcgtgtcgctaaacgccgtcgctttgctgtgcgggaatagtgaggtcaggttcagtgtggagaaggcggtggagagagagagcgtggattttcgagtcgaaaatgaggggggaagtggagatagggagaggaaggagagggtttatgagttcgggtggagagagaatgcaatgtcctccgggtctggacctgtggttttgcttcactttccgttgagccgaaatgcgagcactactgatttcgatgggagtcctaatgttttcgacggcagggaggatgttggtagagggccgtacgatttgttacagaagctaccgccaaatgctactgaatacatatttcaagctctcaagccaaggattgttttcagtgcccacactcagcaattctatgatcatttccatccagatggaacccgtgaggttactgttccggccatgacatggaatgcgagggatgatcctggatttgttattgccactttccgacagaatgaaggagcagtaagcatcagccattgctctcttgctagggaatctcacatacttgtagcctacgcatctcttctgattctttcggtatcaatgctggctttctcaagcacacctagtttaagatctttcaagacaatgataacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

224

Amino Acids

24.73

Weight (kDa)

5.53

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37850 FvH4_5g37850
malus_domestica MD15G1365100.v1.1
prunus_persica Prupe.1G513100_v2.0.a1
pyrus_communis pycom15g32740
rosa_chinensis RchiOBHm_Chr7g0239831
rosa_laevigata RLG00000000727
rosa_multiflora Rmu_sc0000540.1_g000066 Rmu_sc0007193.1_g000009
rosa_roxburghii Rroxscaffold_3G00220780
rosa_rugosa Rorug07G0329600 Rorug07G0329700 Rorug07G0329800
rosa_samantha Rh7AG483800 Rh7BG456800 Rh7CG501300 Rh7DG469500
rosa_wichuraiana Rw7G040580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 478
AciI CCGC 4 cut(s) 7, 67, 102, 351
AclWI GGATC 1 cut(s) 489
AcoI YGGCCR 1 cut(s) 469
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 2 cut(s) 378, 659
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 3 cut(s) 34, 347, 381
AluI AGCT 3 cut(s) 34, 347, 381
Alw21I GWGCWC 1 cut(s) 267
AlwI GGATC 1 cut(s) 489
AoxI GGCC 2 cut(s) 324, 469
AspS9I GGNCC 2 cut(s) 222, 324
AsuC2I CCSGG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 267
BccI CCATC 3 cut(s) 273, 438, 445
BceAI ACGGC 3 cut(s) 36, 311, 317
BciT130I CCWGG 1 cut(s) 499
BclI TGATCA 1 cut(s) 428
BcnI CCSGG 1 cut(s) 215
BfaI CTAG 2 cut(s) 565, 643
BglII AGATCT 1 cut(s) 651
Bme1390I CCNGG 2 cut(s) 215, 499
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 2 cut(s) 222, 324
BmiI GGNNCC 2 cut(s) 11, 449
BmrFI CCNGG 2 cut(s) 215, 499
BmsI GCATC 2 cut(s) 553, 603
BpuEI CTTGAG 2 cut(s) 369, 617
BpuMI CCSGG 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse3DI GCAATG 2 cut(s) 211, 551
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 3 cut(s) 317, 437, 497
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 2 cut(s) 211, 551
BseMII CTCAG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 410
BshFI GGCC 2 cut(s) 326, 471
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 2 cut(s) 214, 468
BsiWI CGTACG 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 478
BsmI GAATGC 2 cut(s) 206, 488
BsnI GGCC 2 cut(s) 326, 471
Bsp1286I GDGCHC 2 cut(s) 267, 410
Bsp143I GATC 3 cut(s) 428, 494, 651
BspACI CCGC 4 cut(s) 7, 67, 102, 351
BspANI GGCC 2 cut(s) 326, 471
BspCNI CTCAG 1 cut(s) 428
BspLI GGNNCC 2 cut(s) 11, 449
BspPI GGATC 1 cut(s) 489
BsrDI GCAATG 2 cut(s) 211, 551
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 3 cut(s) 428, 494, 651
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 604
BstC8I GCNNGC 2 cut(s) 263, 625
BstDEI CTNAG 1 cut(s) 415
BstF5I GGATG 3 cut(s) 317, 437, 497
BstKTI GATC 3 cut(s) 431, 497, 654
BstMBI GATC 3 cut(s) 428, 494, 651
BstNI CCWGG 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 213, 497
BstSLI GKGCMC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 651
BstXI CCANNNNNNTGG 1 cut(s) 444
BstYI RGATCY 1 cut(s) 651
BsuRI GGCC 2 cut(s) 326, 471
BtsCI GGATG 3 cut(s) 317, 437, 497
BtsIMutI CAGTG 2 cut(s) 95, 410
Cac8I GCNNGC 2 cut(s) 263, 625
Cfr13I GGNCC 2 cut(s) 222, 324
Csp6I GTAC 1 cut(s) 329
CviAII CATG 2 cut(s) 473, 478
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 1 cut(s) 415
DpnI GATC 3 cut(s) 430, 496, 653
DpnII GATC 3 cut(s) 428, 494, 651
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 604
EarI CTCTTC 1 cut(s) 604
Eco130I CCWWGG 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 2 cut(s) 476, 481
FaiI YATR 6 cut(s) 181, 372, 427, 474, 479, 579
FatI CATG 2 cut(s) 472, 477
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 1 cut(s) 428
FokI GGATG 3 cut(s) 324, 424, 504
FspBI CTAG 2 cut(s) 565, 643
HaeIII GGCC 2 cut(s) 326, 471
HapII CCGG 2 cut(s) 214, 468
Hin1II CATG 2 cut(s) 476, 481
HinfI GANTC 4 cut(s) 130, 284, 570, 605
HpaII CCGG 2 cut(s) 214, 468
Hpy188I TCNGA 2 cut(s) 522, 604
Hpy188III TCNNGA 3 cut(s) 220, 441, 659
Hpy99I CGWCG 2 cut(s) 57, 303
HpyAV CCTTC 3 cut(s) 92, 161, 525
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 415
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 2 cut(s) 476, 481
Ksp22I TGATCA 1 cut(s) 428
Kzo9I GATC 3 cut(s) 428, 494, 651
LmnI GCTCC 2 cut(s) 9, 534
LweI GCATC 2 cut(s) 553, 603
MaeI CTAG 2 cut(s) 565, 643
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 2 cut(s) 337, 458
MalI GATC 3 cut(s) 430, 496, 653
MboI GATC 3 cut(s) 428, 494, 651
MboII GAAGA 1 cut(s) 591
MflI RGATCY 1 cut(s) 651
MhlI GDGCHC 2 cut(s) 267, 410
MluCI AATT 1 cut(s) 420
MlyI GAGTC 2 cut(s) 139, 293
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 9 cut(s) 71, 134, 157, 166, 221, 302, 315, 449, 481
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 442
MspI CCGG 2 cut(s) 214, 468
MspR9I CCNGG 2 cut(s) 215, 499
Mva1269I GAATGC 2 cut(s) 206, 488
MvaI CCWGG 1 cut(s) 499
NciI CCSGG 1 cut(s) 215
NdeII GATC 3 cut(s) 428, 494, 651
NlaIII CATG 2 cut(s) 476, 481
NlaIV GGNNCC 2 cut(s) 11, 449
PcsI WCGNNNNNNNCGW 1 cut(s) 34
PctI GAATGC 2 cut(s) 206, 488
PfeI GAWTC 2 cut(s) 570, 605
Pfl23II CGTACG 1 cut(s) 328
PflMI CCANNNNNTGG 1 cut(s) 478
PfoI TCCNGGA 1 cut(s) 497
PleI GAGTC 2 cut(s) 138, 292
PpsI GAGTC 2 cut(s) 138, 292
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspLI CGTACG 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 11, 449
PspPI GGNCC 2 cut(s) 222, 324
PsuI RGATCY 1 cut(s) 651
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 442
SaqAI TTAA 1 cut(s) 648
Sau3AI GATC 3 cut(s) 428, 494, 651
Sau96I GGNCC 2 cut(s) 222, 324
SchI GAGTC 2 cut(s) 139, 293
ScrFI CCNGG 2 cut(s) 215, 499
SduI GDGCHC 2 cut(s) 267, 410
SfaNI GCATC 2 cut(s) 553, 603
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 442
SmlI CTYRAG 2 cut(s) 384, 632
SmoI CTYRAG 2 cut(s) 384, 632
Sse9I AATT 1 cut(s) 420
SsiI CCGC 4 cut(s) 7, 67, 102, 351
SspMI CTAG 2 cut(s) 565, 643
StyD4I CCNGG 2 cut(s) 213, 497
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 31
TaqI TCGA 4 cut(s) 128, 133, 277, 298
TasI AATT 1 cut(s) 420
TfiI GAWTC 2 cut(s) 570, 605
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 2 cut(s) 95, 410
TspDTI ATGAA 1 cut(s) 544
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 2 cut(s) 95, 410
Van91I CCANNNNNTGG 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 222
XspI CTAG 2 cut(s) 565, 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.