Rh7AG483800

Metallophosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013686
Physical Location & Seq
Reverse (-)
68252885 .. 68257959
5075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG483800.1

Sequence Viewer

Length: 891 bp
ATGGCGGTTGCCTTGAAGCCATTGTTGCCCATCATCATACTCTCCTCTCTGCTCCTCTACGAAGAGTGGGTCTCAACTCCCTCATGCAAACCCGAACCCGACCCGGCCCAGGCCCATGCCCACCCCCACCACCCGGACGACCTCAAGGTCATGATGGTCGCCAACCTCCTCCTCCTCGGCTCCGAATCCGGCTACTTCGACCTCCTCTTCCGCGACTACTACACCTCCAAATTCTTCACGAAATCGTTCCGGACTCTCAGGCCCGATATGCTCCTGGTCCTCGGCGACATCTCGGCGCGTGGCCACCACTTGCGGAGGAGCGAGTACGTCTCGGTGATCCGTCAGTTCCACCGGGTCCTGGGCCCGTTTCTGGACCTCCCGCTCCACGTGGTTCTCGGCGACCGGGACGTCGGAGTCTGCGACGGGCTGAGTGAGGACTCGGTGGGCTGGATCGCGAGGAGGTTGCCGGGCCTGGACCCGGCCGGGTGCGGAGCCTTTGAGATTGGGAACGTCAGCTTCGTGTCGCTAAACGCCGTCGCTTTGCTGTGCGGGAATAGTGAGGTGAGGTTCAGTGTGGAGAAGGCGGTGGAGAGAGAGAGCGTGGATTTTCGACTCGAAAATGAGGGGGGAAGTGGAGATAGAGAGAGGAAGGAGAGGGTTTATGAGTTCGGGTGGAGAGAGAATGCAATATCCTCCGGGTCTGGACCTGTGGTTTTGCTTCACTTTCCGTTGAGCCGAAATGTGAGTACTACTGATTTTGATGGGAGTCCTAATGTTTTCGACGGCAGGGAGGATGTTGGTAGAGGGCCGTACGATTTGTTACAGAAGCTACCGCCAAATGCTACTGAATACATATTTCAAGCTCTCAAGCCAAGTGAAGCATGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

296

Amino Acids

32.87

Weight (kDa)

5.4

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37850 FvH4_5g37850
malus_domestica MD15G1365100.v1.1
prunus_persica Prupe.1G513100_v2.0.a1
pyrus_communis pycom15g32740
rosa_chinensis RchiOBHm_Chr7g0239831
rosa_laevigata RLG00000000727
rosa_multiflora Rmu_sc0000540.1_g000066 Rmu_sc0007193.1_g000009
rosa_roxburghii Rroxscaffold_3G00220780
rosa_rugosa Rorug07G0329600 Rorug07G0329700 Rorug07G0329800
rosa_samantha Rh7AG483800 Rh7BG456800 Rh7CG501300 Rh7DG469500
rosa_wichuraiana Rw7G040580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 146, 407, 413
AatII GACGTC 1 cut(s) 411
AccBSI CCGCTC 1 cut(s) 382
AccII CGCG 3 cut(s) 213, 298, 455
AccIII TCCGGA 1 cut(s) 249
AciI CCGC 8 cut(s) 5, 211, 313, 380, 489, 549, 584, 833
AclWI GGATC 2 cut(s) 331, 458
AcoI YGGCCR 2 cut(s) 301, 480
AcsI RAATTY 1 cut(s) 230
AcvI CACGTG 1 cut(s) 388
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 3 cut(s) 326, 748, 812
AfiI CCNNNNNNNGG 5 cut(s) 109, 133, 358, 370, 478
AgsI TTSAA 2 cut(s) 16, 860
AjnI CCWGG 4 cut(s) 108, 273, 357, 471
AluBI AGCT 3 cut(s) 516, 829, 863
AluI AGCT 3 cut(s) 516, 829, 863
Alw26I GTCTC 2 cut(s) 76, 334
AlwI GGATC 2 cut(s) 331, 458
Aor13HI TCCGGA 1 cut(s) 249
AoxI GGCC 8 cut(s) 105, 111, 260, 301, 361, 469, 480, 806
ApaI GGGCCC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 230
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 298
AsuC2I CCSGG 8 cut(s) 104, 134, 353, 404, 468, 479, 484, 697
AsuHPI GGTGA 2 cut(s) 346, 574
AvaII GGWCC 5 cut(s) 277, 355, 373, 475, 704
BaeGI GKGCMC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 303
BanII GRGCYC 1 cut(s) 365
BbrPI CACGTG 1 cut(s) 388
BccI CCATC 3 cut(s) 38, 148, 755
BceAI ACGGC 3 cut(s) 518, 793, 799
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciT130I CCWGG 4 cut(s) 110, 275, 359, 473
BcnI CCSGG 8 cut(s) 104, 134, 353, 404, 468, 479, 484, 697
BcoDI GTCTC 2 cut(s) 76, 334
BmcAI AGTACT 1 cut(s) 748
Bme18I GGWCC 5 cut(s) 277, 355, 373, 475, 704
BmiI GGNNCC 5 cut(s) 181, 356, 363, 477, 493
BplI GAGNNNNNCTC 4 cut(s) 56, 88, 314, 346
BpuEI CTTGAG 2 cut(s) 128, 851
BpuMI CCSGG 8 cut(s) 104, 134, 353, 404, 468, 479, 484, 697
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 4 cut(s) 108, 175, 280, 358
BsaWI WCCGGW 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 133, 358, 370, 478
BseAI TCCGGA 1 cut(s) 249
BseBI CCWGG 4 cut(s) 110, 275, 359, 473
BseDI CCNNGG 4 cut(s) 108, 175, 280, 358
BseGI GGATG 1 cut(s) 799
BseLI CCNNNNNNNGG 5 cut(s) 109, 133, 358, 370, 478
BseMII CTCAG 2 cut(s) 271, 419
BseRI GAGGAG 8 cut(s) 34, 44, 158, 161, 164, 194, 331, 472
BseSI GKGCMC 1 cut(s) 365
BseX3I CGGCCG 1 cut(s) 480
Bsh1236I CGCG 3 cut(s) 213, 298, 455
Bsh1285I CGRYCG 2 cut(s) 403, 483
BshFI GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
BsiEI CGRYCG 2 cut(s) 403, 483
BsiWI CGTACG 1 cut(s) 810
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 5 cut(s) 109, 133, 358, 370, 478
BsmAI GTCTC 2 cut(s) 76, 334
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
Bso31I GGTCTC 1 cut(s) 76
Bsp120I GGGCCC 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 365
Bsp13I TCCGGA 1 cut(s) 249
Bsp143I GATC 2 cut(s) 336, 450
Bsp68I TCGCGA 1 cut(s) 455
BspACI CCGC 8 cut(s) 5, 211, 313, 380, 489, 549, 584, 833
BspANI GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
BspCNI CTCAG 2 cut(s) 270, 420
BspEI TCCGGA 1 cut(s) 249
BspFNI CGCG 3 cut(s) 213, 298, 455
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 5 cut(s) 181, 356, 363, 477, 493
BspPI GGATC 2 cut(s) 331, 458
BspTNI GGTCTC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 382
BssECI CCNNGG 4 cut(s) 108, 175, 280, 358
BssMI GATC 2 cut(s) 336, 450
BssNI GRCGYC 1 cut(s) 408
Bst2UI CCWGG 4 cut(s) 110, 275, 359, 473
Bst6I CTCTTC 2 cut(s) 57, 212
BstACI GRCGYC 1 cut(s) 408
BstBAI YACGTR 1 cut(s) 388
BstDEI CTNAG 2 cut(s) 257, 428
BstF5I GGATG 1 cut(s) 799
BstFNI CGCG 3 cut(s) 213, 298, 455
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 2 cut(s) 339, 453
BstMAI GTCTC 2 cut(s) 76, 334
BstMBI GATC 2 cut(s) 336, 450
BstMCI CGRYCG 2 cut(s) 403, 483
BstMWI GCNNNNNNNGC 2 cut(s) 25, 268
BstNI CCWGG 4 cut(s) 110, 275, 359, 473
BstNSI RCATGY 1 cut(s) 885
BstSLI GKGCMC 1 cut(s) 365
BstUI CGCG 3 cut(s) 213, 298, 455
BstZI CGGCCG 1 cut(s) 480
BsuRI GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
BtsCI GGATG 1 cut(s) 799
BtsIMutI CAGTG 1 cut(s) 577
BtuMI TCGCGA 1 cut(s) 455
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 298
Csp6I GTAC 3 cut(s) 325, 747, 811
CviAII CATG 4 cut(s) 84, 116, 151, 882
CviQI GTAC 3 cut(s) 325, 747, 811
DdeI CTNAG 2 cut(s) 257, 428
DpnI GATC 2 cut(s) 338, 452
DpnII GATC 2 cut(s) 336, 450
DrdI GACNNNNNNGTC 3 cut(s) 146, 407, 413
DseDI GACNNNNNNGTC 3 cut(s) 146, 407, 413
EaeI YGGCCR 2 cut(s) 301, 480
EagI CGGCCG 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 57, 212
EarI CTCTTC 2 cut(s) 57, 212
EclXI CGGCCG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 5 cut(s) 277, 355, 373, 475, 704
Eco52I CGGCCG 1 cut(s) 480
Eco72I CACGTG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 4 cut(s) 108, 273, 357, 471
EcoT38I GRGCYC 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 4 cut(s) 87, 119, 154, 885
FaiI YATR 8 cut(s) 38, 85, 117, 152, 269, 663, 854, 883
FaqI GGGAC 1 cut(s) 419
FatI CATG 4 cut(s) 83, 115, 150, 881
FauI CCCGC 2 cut(s) 387, 542
FokI GGATG 1 cut(s) 806
FriOI GRGCYC 1 cut(s) 365
GlaI GCGC 1 cut(s) 297
HaeIII GGCC 8 cut(s) 107, 113, 262, 303, 363, 471, 482, 808
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 4 cut(s) 87, 119, 154, 885
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 6 cut(s) 185, 253, 414, 437, 612, 766
HphI GGTGA 2 cut(s) 346, 574
Hpy188I TCNGA 2 cut(s) 184, 413
Hpy188III TCNNGA 6 cut(s) 151, 238, 250, 371, 454, 702
Hpy99I CGWCG 4 cut(s) 413, 425, 539, 785
HpyAV CCTTC 2 cut(s) 574, 643
HpyCH4IV ACGT 4 cut(s) 327, 387, 408, 510
HpyCH4V TGCA 2 cut(s) 87, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 268
HpyF3I CTNAG 2 cut(s) 257, 428
HpySE526I ACGT 4 cut(s) 327, 387, 408, 510
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 4 cut(s) 87, 119, 154, 885
HspAI GCGC 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 249
Kzo9I GATC 2 cut(s) 336, 450
LmnI GCTCC 6 cut(s) 57, 185, 276, 318, 387, 491
MaeII ACGT 4 cut(s) 327, 387, 408, 510
MaeIII GTNAC 1 cut(s) 819
MalI GATC 2 cut(s) 338, 452
MbiI CCGCTC 1 cut(s) 382
MboI GATC 2 cut(s) 336, 450
MboII GAAGA 3 cut(s) 74, 199, 226
MhlI GDGCHC 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 2 cut(s) 230, 886
MluNI TGGCCA 1 cut(s) 303
MlyI GAGTC 5 cut(s) 247, 423, 431, 606, 775
MmeI TCCRAC 1 cut(s) 391
Mox20I TGGCCA 1 cut(s) 303
MroI TCCGGA 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 245
MscI TGGCCA 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 4 cut(s) 110, 275, 359, 473
MvnI CGCG 3 cut(s) 213, 298, 455
MwoI GCNNNNNNNGC 2 cut(s) 25, 268
NciI CCSGG 8 cut(s) 104, 134, 353, 404, 468, 479, 484, 697
NdeII GATC 2 cut(s) 336, 450
NlaIII CATG 4 cut(s) 87, 119, 154, 885
NlaIV GGNNCC 5 cut(s) 181, 356, 363, 477, 493
NmeAIII GCCGAG 4 cut(s) 156, 261, 272, 375
NruI TCGCGA 1 cut(s) 455
NspI RCATGY 1 cut(s) 885
PagI TCATGA 1 cut(s) 150
PcsI WCGNNNNNNNCGW 2 cut(s) 417, 516
PctI GAATGC 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 185
Pfl23II CGTACG 1 cut(s) 810
PleI GAGTC 5 cut(s) 247, 422, 431, 606, 774
PmaCI CACGTG 1 cut(s) 388
PmlI CACGTG 1 cut(s) 388
PpsI GAGTC 5 cut(s) 247, 422, 431, 606, 774
Ppu21I YACGTR 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 4 cut(s) 108, 273, 357, 471
PspCI CACGTG 1 cut(s) 388
PspGI CCWGG 4 cut(s) 108, 273, 357, 471
PspLI CGTACG 1 cut(s) 810
PspN4I GGNNCC 5 cut(s) 181, 356, 363, 477, 493
PspOMI GGGCCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 355
RruI TCGCGA 1 cut(s) 455
RsaI GTAC 3 cut(s) 326, 748, 812
RsaNI GTAC 3 cut(s) 325, 747, 811
Sau3AI GATC 2 cut(s) 336, 450
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 5 cut(s) 247, 423, 431, 606, 775
SduI GDGCHC 1 cut(s) 365
SinI GGWCC 5 cut(s) 277, 355, 373, 475, 704
SmlI CTYRAG 2 cut(s) 143, 866
SmoI CTYRAG 2 cut(s) 143, 866
Sse9I AATT 2 cut(s) 230, 886
SsiI CCGC 8 cut(s) 5, 211, 313, 380, 489, 549, 584, 833
TaiI ACGT 4 cut(s) 330, 390, 411, 513
TaqI TCGA 4 cut(s) 198, 610, 615, 780
TasI AATT 2 cut(s) 230, 886
TatI WGTACW 1 cut(s) 746
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 1 cut(s) 577
TspGWI ACGGA 2 cut(s) 329, 717
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 5 cut(s) 277, 355, 373, 475, 704
XapI RAATTY 1 cut(s) 230
XceI RCATGY 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 245
ZraI GACGTC 1 cut(s) 409
ZrmI AGTACT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.