Rh7BG456800

Metallophosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013686
Physical Location & Seq
Reverse (-)
54101120 .. 54104746
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG456800.1

Sequence Viewer

Length: 897 bp
ATGGCGGTTGCCTTGAAGCCATTGTTGCCCATCATCATACTCTCCTCTCTGCTCCTCTACGAAGAGTGGGTCTCAACTCCCTCATGCAAACCCGAACCACCCGGACCCGAACCCGACCCGGCCCTGGCGGCCCACCACCCGGACGACCTCAAGGTCATGATGGTCGCCAACCTCCTCCTCCTCGGCTCCGAATCCGGCTACTTCGACCTCCTCTTCCGCGACTACTACACCTCCAAATTCTTCACGAAATCGTTCCGGACTCTACGGCCCGATATGCTCCTGGTCCTGGGCGACATCTCGGCGCGTGGCCACCACTTGCGGAGGAGCGAGTACGTCTCGGTGATCCGTCAGTTCCATCGGGTCCTGGGCCCGTTTCTGGACCTCCCGCTCCACGTGGTTCTCGGCGACCGCGACGTCGGAGTCTGCGACGGGCTGAGTGAGGACTCGGTGGGCTGGATCGCGAGGAGGTTGCCGGGTTTGGACCCGGCCGGGTGCGGAGCCTTTGAGATCGGGAACGTCAGCTTCGTGTCGCTAAACGCCGTCGCTTTGCTGTGCGGGAATAGTGAGGTGAGGTTTAGTGTGGAGAAGGCGGTGGAGAGAGAGAGCGTGGATTTTCGAGTCGAAAATGAGGGGGGAAGTGGAGATAGAGAGAGGAAGGAGAGGGTTTATGAGTTTGGGTGGAGAGAGAATGCAATGGCGTCCGGGTCTGGTCCTGTGGTTTTGCTTCACTTTCCTTTAAGCCGAAATGTGAGGACTACTGATTTCGATGGGAGTCCTAATGTTTTCGACGACAGGGAGGATGTTGGTAGAGGGCCGTACGATTTGTTACAGAAGTTACCGCCAAATGCTACTGAATATATATTTCAAGCTCTCAAGCCAAGTGAAGCATGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

298

Amino Acids

33.08

Weight (kDa)

5.16

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37850 FvH4_5g37850
malus_domestica MD15G1365100.v1.1
prunus_persica Prupe.1G513100_v2.0.a1
pyrus_communis pycom15g32740
rosa_chinensis RchiOBHm_Chr7g0239831
rosa_laevigata RLG00000000727
rosa_multiflora Rmu_sc0000540.1_g000066 Rmu_sc0007193.1_g000009
rosa_roxburghii Rroxscaffold_3G00220780
rosa_rugosa Rorug07G0329600 Rorug07G0329700 Rorug07G0329800
rosa_samantha Rh7AG483800 Rh7BG456800 Rh7CG501300 Rh7DG469500
rosa_wichuraiana Rw7G040580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 152, 413, 419
AatII GACGTC 1 cut(s) 417
AccBSI CCGCTC 1 cut(s) 388
AccII CGCG 4 cut(s) 219, 304, 411, 461
AccIII TCCGGA 1 cut(s) 255
AclWI GGATC 2 cut(s) 337, 464
AcoI YGGCCR 2 cut(s) 307, 486
AcsI RAATTY 1 cut(s) 236
AcvI CACGTG 1 cut(s) 394
AcyI GRCGYC 2 cut(s) 414, 698
AfaI GTAC 2 cut(s) 332, 818
AfiI CCNNNNNNNGG 4 cut(s) 124, 139, 286, 376
AgsI TTSAA 2 cut(s) 16, 866
AjnI CCWGG 4 cut(s) 123, 279, 285, 363
AluBI AGCT 2 cut(s) 522, 869
AluI AGCT 2 cut(s) 522, 869
Alw26I GTCTC 2 cut(s) 76, 340
AlwI GGATC 2 cut(s) 337, 464
Aor13HI TCCGGA 1 cut(s) 255
AoxI GGCC 7 cut(s) 120, 129, 266, 307, 367, 486, 812
ApaI GGGCCC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 236
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 304
AsuC2I CCSGG 7 cut(s) 102, 119, 140, 474, 485, 490, 703
AsuHPI GGTGA 2 cut(s) 352, 580
AvaII GGWCC 6 cut(s) 104, 283, 361, 379, 481, 710
BaeGI GKGCMC 1 cut(s) 371
BalI TGGCCA 1 cut(s) 309
BanII GRGCYC 1 cut(s) 371
BbrPI CACGTG 1 cut(s) 394
BccI CCATC 4 cut(s) 38, 154, 363, 761
BceAI ACGGC 3 cut(s) 281, 524, 799
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BciT130I CCWGG 4 cut(s) 125, 281, 287, 365
BcnI CCSGG 7 cut(s) 102, 119, 140, 474, 485, 490, 703
BcoDI GTCTC 2 cut(s) 76, 340
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme18I GGWCC 6 cut(s) 104, 283, 361, 379, 481, 710
BmiI GGNNCC 6 cut(s) 106, 187, 362, 369, 483, 499
BplI GAGNNNNNCTC 4 cut(s) 56, 88, 320, 352
BpuEI CTTGAG 2 cut(s) 134, 857
BpuMI CCSGG 7 cut(s) 102, 119, 140, 474, 485, 490, 703
BsaAI YACGTR 1 cut(s) 394
BsaHI GRCGYC 2 cut(s) 414, 698
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 4 cut(s) 123, 181, 286, 364
BsaWI WCCGGW 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 139, 286, 376
Bse3DI GCAATG 1 cut(s) 699
BseAI TCCGGA 1 cut(s) 255
BseBI CCWGG 4 cut(s) 125, 281, 287, 365
BseDI CCNNGG 4 cut(s) 123, 181, 286, 364
BseGI GGATG 1 cut(s) 805
BseLI CCNNNNNNNGG 4 cut(s) 124, 139, 286, 376
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 425
BseRI GAGGAG 8 cut(s) 34, 44, 164, 167, 170, 200, 337, 478
BseSI GKGCMC 1 cut(s) 371
BseX3I CGGCCG 1 cut(s) 486
Bsh1236I CGCG 4 cut(s) 219, 304, 411, 461
Bsh1285I CGRYCG 2 cut(s) 409, 489
BshFI GGCC 7 cut(s) 122, 131, 268, 309, 369, 488, 814
BsiEI CGRYCG 2 cut(s) 409, 489
BsiSI CCGG 9 cut(s) 102, 119, 140, 195, 256, 473, 485, 489, 702
BsiWI CGTACG 1 cut(s) 816
BslI CCNNNNNNNGG 4 cut(s) 124, 139, 286, 376
BsmAI GTCTC 2 cut(s) 76, 340
BsmBI CGTCTC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 7 cut(s) 122, 131, 268, 309, 369, 488, 814
Bso31I GGTCTC 1 cut(s) 76
Bsp120I GGGCCC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 371
Bsp13I TCCGGA 1 cut(s) 255
Bsp143I GATC 3 cut(s) 342, 456, 507
Bsp68I TCGCGA 1 cut(s) 461
BspANI GGCC 7 cut(s) 122, 131, 268, 309, 369, 488, 814
BspCNI CTCAG 1 cut(s) 426
BspEI TCCGGA 1 cut(s) 255
BspFNI CGCG 4 cut(s) 219, 304, 411, 461
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 6 cut(s) 106, 187, 362, 369, 483, 499
BspPI GGATC 2 cut(s) 337, 464
BspTNI GGTCTC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 388
BsrDI GCAATG 1 cut(s) 699
BssECI CCNNGG 4 cut(s) 123, 181, 286, 364
BssMI GATC 3 cut(s) 342, 456, 507
BssNI GRCGYC 2 cut(s) 414, 698
Bst2UI CCWGG 4 cut(s) 125, 281, 287, 365
Bst6I CTCTTC 2 cut(s) 57, 218
BstACI GRCGYC 2 cut(s) 414, 698
BstBAI YACGTR 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 434
BstF5I GGATG 1 cut(s) 805
BstFNI CGCG 4 cut(s) 219, 304, 411, 461
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 345, 459, 510
BstMAI GTCTC 2 cut(s) 76, 340
BstMBI GATC 3 cut(s) 342, 456, 507
BstMCI CGRYCG 2 cut(s) 409, 489
BstMWI GCNNNNNNNGC 3 cut(s) 25, 128, 274
BstNI CCWGG 4 cut(s) 125, 281, 287, 365
BstNSI RCATGY 1 cut(s) 891
BstSLI GKGCMC 1 cut(s) 371
BstUI CGCG 4 cut(s) 219, 304, 411, 461
BstZI CGGCCG 1 cut(s) 486
BsuRI GGCC 7 cut(s) 122, 131, 268, 309, 369, 488, 814
BtsCI GGATG 1 cut(s) 805
BtuMI TCGCGA 1 cut(s) 461
CciI TCATGA 1 cut(s) 156
CfoI GCGC 1 cut(s) 304
CseI GACGC 1 cut(s) 687
Csp6I GTAC 2 cut(s) 331, 817
CviAII CATG 3 cut(s) 84, 157, 888
CviQI GTAC 2 cut(s) 331, 817
DdeI CTNAG 1 cut(s) 434
DpnI GATC 3 cut(s) 344, 458, 509
DpnII GATC 3 cut(s) 342, 456, 507
DrdI GACNNNNNNGTC 3 cut(s) 152, 413, 419
DseDI GACNNNNNNGTC 3 cut(s) 152, 413, 419
EaeI YGGCCR 2 cut(s) 307, 486
EagI CGGCCG 1 cut(s) 486
Eam1104I CTCTTC 2 cut(s) 57, 218
EarI CTCTTC 2 cut(s) 57, 218
EclXI CGGCCG 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 6 cut(s) 104, 283, 361, 379, 481, 710
Eco52I CGGCCG 1 cut(s) 486
Eco72I CACGTG 1 cut(s) 394
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 4 cut(s) 123, 279, 285, 363
EcoT38I GRGCYC 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 3 cut(s) 87, 160, 891
FaiI YATR 8 cut(s) 38, 85, 158, 275, 669, 858, 860, 889
FatI CATG 3 cut(s) 83, 156, 887
FauI CCCGC 2 cut(s) 393, 548
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 812
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 1 cut(s) 129
GlaI GCGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 7 cut(s) 122, 131, 268, 309, 369, 488, 814
HapII CCGG 9 cut(s) 102, 119, 140, 195, 256, 473, 485, 489, 702
HgaI GACGC 1 cut(s) 687
HhaI GCGC 1 cut(s) 304
Hin1I GRCGYC 2 cut(s) 414, 698
Hin1II CATG 3 cut(s) 87, 160, 891
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 6 cut(s) 191, 259, 420, 443, 618, 772
HpaII CCGG 9 cut(s) 102, 119, 140, 195, 256, 473, 485, 489, 702
HphI GGTGA 2 cut(s) 352, 580
Hpy188I TCNGA 2 cut(s) 190, 419
Hpy188III TCNNGA 6 cut(s) 157, 244, 256, 377, 460, 511
Hpy99I CGWCG 5 cut(s) 416, 419, 431, 545, 791
HpyAV CCTTC 2 cut(s) 580, 649
HpyCH4IV ACGT 4 cut(s) 333, 393, 414, 516
HpyCH4V TGCA 2 cut(s) 87, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 128, 274
HpyF3I CTNAG 1 cut(s) 434
HpySE526I ACGT 4 cut(s) 333, 393, 414, 516
Hsp92I GRCGYC 2 cut(s) 414, 698
Hsp92II CATG 3 cut(s) 87, 160, 891
HspAI GCGC 1 cut(s) 302
Kpn2I TCCGGA 1 cut(s) 255
Kzo9I GATC 3 cut(s) 342, 456, 507
LmnI GCTCC 6 cut(s) 57, 191, 282, 324, 393, 497
MaeII ACGT 4 cut(s) 333, 393, 414, 516
MaeIII GTNAC 2 cut(s) 825, 834
MalI GATC 3 cut(s) 344, 458, 509
MbiI CCGCTC 1 cut(s) 388
MboI GATC 3 cut(s) 342, 456, 507
MboII GAAGA 3 cut(s) 74, 205, 232
MhlI GDGCHC 1 cut(s) 371
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 2 cut(s) 236, 892
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 5 cut(s) 253, 429, 437, 627, 781
MmeI TCCRAC 1 cut(s) 397
Mox20I TGGCCA 1 cut(s) 309
MroI TCCGGA 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 251
MscI TGGCCA 1 cut(s) 309
MseI TTAA 1 cut(s) 737
Msp20I TGGCCA 1 cut(s) 309
MspI CCGG 9 cut(s) 102, 119, 140, 195, 256, 473, 485, 489, 702
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 4 cut(s) 125, 281, 287, 365
MvnI CGCG 4 cut(s) 219, 304, 411, 461
MwoI GCNNNNNNNGC 3 cut(s) 25, 128, 274
NciI CCSGG 7 cut(s) 102, 119, 140, 474, 485, 490, 703
NdeII GATC 3 cut(s) 342, 456, 507
NlaIII CATG 3 cut(s) 87, 160, 891
NlaIV GGNNCC 6 cut(s) 106, 187, 362, 369, 483, 499
NmeAIII GCCGAG 3 cut(s) 162, 278, 381
NruI TCGCGA 1 cut(s) 461
NspI RCATGY 1 cut(s) 891
PagI TCATGA 1 cut(s) 156
PcsI WCGNNNNNNNCGW 3 cut(s) 408, 423, 522
PctI GAATGC 1 cut(s) 694
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 191
Pfl23II CGTACG 1 cut(s) 816
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 5 cut(s) 253, 428, 437, 626, 780
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
PpsI GAGTC 5 cut(s) 253, 428, 437, 626, 780
Ppu21I YACGTR 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 4 cut(s) 123, 279, 285, 363
PspCI CACGTG 1 cut(s) 394
PspGI CCWGG 4 cut(s) 123, 279, 285, 363
PspLI CGTACG 1 cut(s) 816
PspN4I GGNNCC 6 cut(s) 106, 187, 362, 369, 483, 499
PspOMI GGGCCC 1 cut(s) 367
PspPPI RGGWCCY 1 cut(s) 361
RruI TCGCGA 1 cut(s) 461
RsaI GTAC 2 cut(s) 332, 818
RsaNI GTAC 2 cut(s) 331, 817
SaqAI TTAA 1 cut(s) 737
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 3 cut(s) 342, 456, 507
SchI GAGTC 5 cut(s) 253, 429, 437, 627, 781
SduI GDGCHC 1 cut(s) 371
SfiI GGCCNNNNNGGCC 1 cut(s) 128
SinI GGWCC 6 cut(s) 104, 283, 361, 379, 481, 710
SmlI CTYRAG 2 cut(s) 149, 872
SmoI CTYRAG 2 cut(s) 149, 872
Sse9I AATT 2 cut(s) 236, 892
TaiI ACGT 4 cut(s) 336, 396, 417, 519
TaqI TCGA 5 cut(s) 204, 616, 621, 765, 786
TasI AATT 2 cut(s) 236, 892
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 737
Tru9I TTAA 1 cut(s) 737
TspGWI ACGGA 1 cut(s) 335
VpaK11BI GGWCC 6 cut(s) 104, 283, 361, 379, 481, 710
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 891
XmnI GAANNNNTTC 1 cut(s) 251
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.