Rw7G040580

Metallophosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013686
Physical Location & Seq
Reverse (-)
63224364 .. 63227865
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040580.1

Sequence Viewer

Length: 879 bp
ATGCTCCTGGTCCTCGGCGACATCTCGGCGCGTGGCCACCACTTGCGGAGGAGCGAGTACGTCTCGGTGATCCGTCAGTTCCACCGGGTCCTGGGCCCGTTTCTGGACCTCCCGCTCCACGTGGTTCTCGGCGACCGGGACGTCGGAGTCTGCGACGGGCTGAGTGAGGACTCGGTCGGCTGGATCGCGAGGAGGTTGCCGGGCCTGGACCCGGCCGGGTGCGGAGCCTTTGAGATTGGGAACGTCAGCTTCGTGTCGCTAAACGCCGTCGCTTTGCTGTGCGGGAATAGTGAGGTGAGGTTCAGTGTGGAGAAGGCGGTGGAGAGAGAGAGCGTGGATTTTCGAGTCGAAAATGAGGGGGGAAGTGGAGATAGAGAGAGGAAGGAGAGGGTTTATGAGTTCGGGTGGAGAGAGAATGCAATGTCCTCCGGGTCTGGACCTGTGGTTTTGCTTCACTTTCCGTTGAGTACTACTGATTTCGATGGGAGTCCTAATGTTTTCGACGGCAGGGAGGATGTTGGTAGAGGGCCGTACAATTTGTTACAGAAGCTACCGCCAAATGCTACTGAATACATATTTCAAGCTCTCAAGCCAAGGATTGTTTTCAGTGCCCACACTCAGGAATTCTATGATCATTTCCATCCAGATGGAACCCGTGAGGTTACTGTTCCAGCCATGACATGGAATGCGAGGGATGATCCTGGATTTGTTATTGCCACTTTCCGACAGAATGAAGGAGCAGTAAGCATCAGCCATTGCTCTCTTGCTAGGGAATCTCACATACTTGTAGCCTATGCATCTATTCTGATTCTTTCGGTATCAATGCTGGCTCTCTCAAGCACACCTAGTTTAAGATCTTTCAAGACAATGATAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

292

Amino Acids

32.22

Weight (kDa)

5.69

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37850 FvH4_5g37850
malus_domestica MD15G1365100.v1.1
prunus_persica Prupe.1G513100_v2.0.a1
pyrus_communis pycom15g32740
rosa_chinensis RchiOBHm_Chr7g0239831
rosa_laevigata RLG00000000727
rosa_multiflora Rmu_sc0000540.1_g000066 Rmu_sc0007193.1_g000009
rosa_roxburghii Rroxscaffold_3G00220780
rosa_rugosa Rorug07G0329600 Rorug07G0329700 Rorug07G0329800
rosa_samantha Rh7AG483800 Rh7BG456800 Rh7CG501300 Rh7DG469500
rosa_wichuraiana Rw7G040580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 140, 146
AatII GACGTC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 681
AccBSI CCGCTC 1 cut(s) 115
AccII CGCG 2 cut(s) 31, 188
AciI CCGC 6 cut(s) 46, 113, 222, 282, 317, 554
AclWI GGATC 3 cut(s) 64, 191, 692
AcoI YGGCCR 2 cut(s) 34, 213
AcsI RAATTY 1 cut(s) 623
AcvI CACGTG 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 3 cut(s) 59, 469, 533
AfiI CCNNNNNNNGG 5 cut(s) 91, 103, 211, 619, 681
AgsI TTSAA 2 cut(s) 581, 862
AjnI CCWGG 4 cut(s) 6, 90, 204, 700
AluBI AGCT 3 cut(s) 249, 550, 584
AluI AGCT 3 cut(s) 249, 550, 584
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 3 cut(s) 64, 191, 692
AoxI GGCC 5 cut(s) 34, 94, 202, 213, 527
ApaI GGGCCC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 623
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 9 cut(s) 10, 88, 94, 95, 106, 202, 208, 437, 527
AsuC2I CCSGG 6 cut(s) 86, 137, 201, 212, 217, 430
AsuHPI GGTGA 2 cut(s) 79, 307
AvaII GGWCC 5 cut(s) 10, 88, 106, 208, 437
BaeGI GKGCMC 2 cut(s) 98, 613
BalI TGGCCA 1 cut(s) 36
BanII GRGCYC 1 cut(s) 98
BbrPI CACGTG 1 cut(s) 121
BccI CCATC 3 cut(s) 476, 641, 648
BceAI ACGGC 3 cut(s) 251, 514, 520
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 4 cut(s) 8, 92, 206, 702
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 6 cut(s) 86, 137, 201, 212, 217, 430
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 2 cut(s) 768, 846
BglII AGATCT 1 cut(s) 854
BmcAI AGTACT 1 cut(s) 469
Bme18I GGWCC 5 cut(s) 10, 88, 106, 208, 437
BmgT120I GGNCC 9 cut(s) 10, 88, 94, 95, 106, 202, 208, 437, 527
BmiI GGNNCC 5 cut(s) 89, 96, 210, 226, 652
BmsI GCATC 2 cut(s) 756, 806
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 2 cut(s) 572, 820
BpuMI CCSGG 6 cut(s) 86, 137, 201, 212, 217, 430
BsaAI YACGTR 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 13, 91, 593
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 103, 211, 619, 681
Bse3DI GCAATG 2 cut(s) 426, 754
BseBI CCWGG 4 cut(s) 8, 92, 206, 702
BseDI CCNNGG 3 cut(s) 13, 91, 593
BseGI GGATG 3 cut(s) 520, 640, 700
BseLI CCNNNNNNNGG 5 cut(s) 91, 103, 211, 619, 681
BseMI GCAATG 2 cut(s) 426, 754
BseMII CTCAG 2 cut(s) 152, 632
BseRI GAGGAG 2 cut(s) 64, 205
BseSI GKGCMC 2 cut(s) 98, 613
BseX3I CGGCCG 1 cut(s) 213
Bsh1236I CGCG 2 cut(s) 31, 188
Bsh1285I CGRYCG 3 cut(s) 136, 177, 216
BshFI GGCC 5 cut(s) 36, 96, 204, 215, 529
BsiEI CGRYCG 3 cut(s) 136, 177, 216
BsiSI CCGG 6 cut(s) 85, 136, 200, 212, 216, 429
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 5 cut(s) 91, 103, 211, 619, 681
BsmAI GTCTC 1 cut(s) 67
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 2 cut(s) 421, 691
BsnI GGCC 5 cut(s) 36, 96, 204, 215, 529
Bsp120I GGGCCC 1 cut(s) 94
Bsp1286I GDGCHC 2 cut(s) 98, 613
Bsp143I GATC 5 cut(s) 69, 183, 631, 697, 854
Bsp68I TCGCGA 1 cut(s) 188
BspACI CCGC 6 cut(s) 46, 113, 222, 282, 317, 554
BspANI GGCC 5 cut(s) 36, 96, 204, 215, 529
BspCNI CTCAG 2 cut(s) 153, 631
BspFNI CGCG 2 cut(s) 31, 188
BspLI GGNNCC 5 cut(s) 89, 96, 210, 226, 652
BspPI GGATC 3 cut(s) 64, 191, 692
BsrBI CCGCTC 1 cut(s) 115
BsrDI GCAATG 2 cut(s) 426, 754
BssECI CCNNGG 3 cut(s) 13, 91, 593
BssMI GATC 5 cut(s) 69, 183, 631, 697, 854
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 4 cut(s) 8, 92, 206, 702
Bst4CI ACNGT 1 cut(s) 667
BstACI GRCGYC 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 828
BstDEI CTNAG 2 cut(s) 161, 618
BstF5I GGATG 3 cut(s) 520, 640, 700
BstFNI CGCG 2 cut(s) 31, 188
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 5 cut(s) 72, 186, 634, 700, 857
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 5 cut(s) 69, 183, 631, 697, 854
BstMCI CGRYCG 3 cut(s) 136, 177, 216
BstNI CCWGG 4 cut(s) 8, 92, 206, 702
BstSLI GKGCMC 2 cut(s) 98, 613
BstUI CGCG 2 cut(s) 31, 188
BstX2I RGATCY 1 cut(s) 854
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 1 cut(s) 854
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 5 cut(s) 36, 96, 204, 215, 529
BtsCI GGATG 3 cut(s) 520, 640, 700
BtsIMutI CAGTG 2 cut(s) 310, 613
BtuMI TCGCGA 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 828
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 9 cut(s) 10, 88, 94, 95, 106, 202, 208, 437, 527
Csp6I GTAC 3 cut(s) 58, 468, 532
CviAII CATG 3 cut(s) 676, 681, 876
CviQI GTAC 3 cut(s) 58, 468, 532
DdeI CTNAG 2 cut(s) 161, 618
DpnI GATC 5 cut(s) 71, 185, 633, 699, 856
DpnII GATC 5 cut(s) 69, 183, 631, 697, 854
DrdI GACNNNNNNGTC 2 cut(s) 140, 146
DseDI GACNNNNNNGTC 2 cut(s) 140, 146
EaeI YGGCCR 2 cut(s) 34, 213
EagI CGGCCG 1 cut(s) 213
EclXI CGGCCG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 98
Eco47I GGWCC 5 cut(s) 10, 88, 106, 208, 437
Eco52I CGGCCG 1 cut(s) 213
Eco72I CACGTG 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 623
EcoRII CCWGG 4 cut(s) 6, 90, 204, 700
EcoT14I CCWWGG 1 cut(s) 593
EcoT22I ATGCAT 1 cut(s) 799
EcoT38I GRGCYC 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 593
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 3 cut(s) 679, 684, 879
FaiI YATR 8 cut(s) 396, 575, 630, 677, 682, 782, 795, 877
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 675, 680, 875
FauI CCCGC 2 cut(s) 120, 275
FbaI TGATCA 1 cut(s) 631
FokI GGATG 3 cut(s) 527, 627, 707
FriOI GRGCYC 1 cut(s) 98
FspBI CTAG 2 cut(s) 768, 846
GlaI GCGC 1 cut(s) 30
HaeIII GGCC 5 cut(s) 36, 96, 204, 215, 529
HapII CCGG 6 cut(s) 85, 136, 200, 212, 216, 429
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 3 cut(s) 679, 684, 879
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 6 cut(s) 147, 170, 345, 487, 773, 808
HpaII CCGG 6 cut(s) 85, 136, 200, 212, 216, 429
HphI GGTGA 2 cut(s) 79, 307
Hpy188I TCNGA 3 cut(s) 146, 725, 807
Hpy188III TCNNGA 6 cut(s) 104, 187, 435, 620, 644, 862
Hpy99I CGWCG 4 cut(s) 146, 158, 272, 506
HpyAV CCTTC 3 cut(s) 307, 376, 728
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4IV ACGT 4 cut(s) 60, 120, 141, 243
HpyCH4V TGCA 2 cut(s) 419, 797
HpyF3I CTNAG 2 cut(s) 161, 618
HpySE526I ACGT 4 cut(s) 60, 120, 141, 243
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 3 cut(s) 679, 684, 879
HspAI GCGC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 5 cut(s) 69, 183, 631, 697, 854
LmnI GCTCC 5 cut(s) 9, 51, 120, 224, 737
LweI GCATC 2 cut(s) 756, 806
MaeI CTAG 2 cut(s) 768, 846
MaeII ACGT 4 cut(s) 60, 120, 141, 243
MaeIII GTNAC 2 cut(s) 540, 661
MalI GATC 5 cut(s) 71, 185, 633, 699, 856
MbiI CCGCTC 1 cut(s) 115
MboI GATC 5 cut(s) 69, 183, 631, 697, 854
MflI RGATCY 1 cut(s) 854
MhlI GDGCHC 2 cut(s) 98, 613
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 2 cut(s) 535, 623
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 4 cut(s) 156, 164, 354, 496
MmeI TCCRAC 2 cut(s) 124, 748
Mox20I TGGCCA 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 799
MscI TGGCCA 1 cut(s) 36
MseI TTAA 1 cut(s) 851
MslI CAYNNNNRTG 1 cut(s) 645
Msp20I TGGCCA 1 cut(s) 36
MspI CCGG 6 cut(s) 85, 136, 200, 212, 216, 429
Mva1269I GAATGC 2 cut(s) 421, 691
MvaI CCWGG 4 cut(s) 8, 92, 206, 702
MvnI CGCG 2 cut(s) 31, 188
NciI CCSGG 6 cut(s) 86, 137, 201, 212, 217, 430
NdeII GATC 5 cut(s) 69, 183, 631, 697, 854
NlaIII CATG 3 cut(s) 679, 684, 879
NlaIV GGNNCC 5 cut(s) 89, 96, 210, 226, 652
NmeAIII GCCGAG 2 cut(s) 5, 108
NruI TCGCGA 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 799
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 249
PctI GAATGC 2 cut(s) 421, 691
PfeI GAWTC 2 cut(s) 773, 808
PflFI GACNNNGTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 681
PfoI TCCNGGA 1 cut(s) 700
PleI GAGTC 4 cut(s) 155, 164, 353, 495
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 4 cut(s) 155, 164, 353, 495
Ppu21I YACGTR 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 4 cut(s) 6, 90, 204, 700
PspCI CACGTG 1 cut(s) 121
PspGI CCWGG 4 cut(s) 6, 90, 204, 700
PspN4I GGNNCC 5 cut(s) 89, 96, 210, 226, 652
PspOMI GGGCCC 1 cut(s) 94
PspPI GGNCC 9 cut(s) 10, 88, 94, 95, 106, 202, 208, 437, 527
PspPPI RGGWCCY 1 cut(s) 88
PsuI RGATCY 1 cut(s) 854
PsyI GACNNNGTC 1 cut(s) 173
RruI TCGCGA 1 cut(s) 188
RsaI GTAC 3 cut(s) 59, 469, 533
RsaNI GTAC 3 cut(s) 58, 468, 532
RseI CAYNNNNRTG 1 cut(s) 645
SaqAI TTAA 1 cut(s) 851
Sau3AI GATC 5 cut(s) 69, 183, 631, 697, 854
Sau96I GGNCC 9 cut(s) 10, 88, 94, 95, 106, 202, 208, 437, 527
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 4 cut(s) 156, 164, 354, 496
SduI GDGCHC 2 cut(s) 98, 613
SfaNI GCATC 2 cut(s) 756, 806
SinI GGWCC 5 cut(s) 10, 88, 106, 208, 437
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 2 cut(s) 587, 835
SmoI CTYRAG 2 cut(s) 587, 835
Sse9I AATT 2 cut(s) 535, 623
SsiI CCGC 6 cut(s) 46, 113, 222, 282, 317, 554
SspMI CTAG 2 cut(s) 768, 846
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 1 cut(s) 667
TaiI ACGT 4 cut(s) 63, 123, 144, 246
TaqI TCGA 4 cut(s) 343, 348, 480, 501
TaqII GACCGA 1 cut(s) 163
TasI AATT 2 cut(s) 535, 623
TatI WGTACW 1 cut(s) 467
TfiI GAWTC 2 cut(s) 773, 808
Tru1I TTAA 1 cut(s) 851
Tru9I TTAA 1 cut(s) 851
TscAI CASTG 2 cut(s) 310, 613
TspDTI ATGAA 1 cut(s) 747
TspGWI ACGGA 2 cut(s) 62, 450
TspRI CASTG 2 cut(s) 310, 613
Tth111I GACNNNGTC 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 681
VpaK11BI GGWCC 5 cut(s) 10, 88, 106, 208, 437
XapI RAATTY 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 678
XspI CTAG 2 cut(s) 768, 846
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.