Rorug07G0329700

Metallophosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013686
Physical Location & Seq
Forward (+)
36046209 .. 36049592
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0329700.1

Sequence Viewer

Length: 645 bp
ATGCTAGGTTTGCCGGACCACGGATTCGTAGCCATTCCGAGAGATTCTATTCAATGTCTCCCAGAATGTAACAGCACCAATAAATTGGGAGCATCTTTCGAGACTCCCTATGGTCACAGTTTGGTTAAGCCTGTAGAGTATGTTGAATTGATTTTTTCGTTAAAGCCTAATATATGGACCGCTTTGGCGGATGAAGTTCCTGCATGGGTGTCTGATAAGAGGAACAAGACCTCGGTTGATCGAACTGTAAGATGGCTCGACGAATGCATTAAGCTAAATCGGGCAGGTGGATCTGTTTTTGGATCTATTGTTGGAGGATCTTCTGTTCAAGAACGTGAGCGATGTGCGCTCTTGTGGCTAGCCGAAGTGTATCAGCGGGGTTTGGGGAGGGAAGGCATTGAGGGTGGTGAGGTGGCGGAGGAGGTGGAGGGTTTTTGGGTTTTGGTTTTGGTGGAGATAGAGGTTCATCAGACTTCACAACAATCACTCAATCAGGGTACCGCAGCAAATAAACAAACCCGCGGCATCGCGCGGGATAATCTGCTAGAGCGATCGAGAGATCGGTTGTGTTTATTTGCTTTGCACGAGGAGGAGGTAGAGACTAGAGAGATAGATCGGAGGCGAATCCCTAAAGTGATTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

214

Amino Acids

24.04

Weight (kDa)

5.38

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TGT PF01702 19 - 145 4.2e-18 Queuine tRNA-ribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37850 FvH4_5g37850
malus_domestica MD15G1365100.v1.1
prunus_persica Prupe.1G513100_v2.0.a1
pyrus_communis pycom15g32740
rosa_chinensis RchiOBHm_Chr7g0239831
rosa_laevigata RLG00000000727
rosa_multiflora Rmu_sc0000540.1_g000066 Rmu_sc0007193.1_g000009
rosa_roxburghii Rroxscaffold_3G00220780
rosa_rugosa Rorug07G0329600 Rorug07G0329700 Rorug07G0329800
rosa_samantha Rh7AG483800 Rh7BG456800 Rh7CG501300 Rh7DG469500
rosa_wichuraiana Rw7G040580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 275
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 497
AccII CGCG 3 cut(s) 522, 530, 532
AciI CCGC 8 cut(s) 180, 188, 376, 416, 501, 520, 522, 532
AclWI GGATC 3 cut(s) 298, 310, 325
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 53, 146, 329
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 3 cut(s) 62, 95, 593
AlwI GGATC 3 cut(s) 298, 310, 325
ApeKI GCWGC 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
Asp718I GGTACC 1 cut(s) 497
AspLEI GCGC 2 cut(s) 349, 532
AspS9I GGNCC 2 cut(s) 16, 177
AsuHPI GGTGA 1 cut(s) 419
AsuNHI GCTAGC 1 cut(s) 358
AvaII GGWCC 2 cut(s) 16, 177
BanI GGYRCC 1 cut(s) 497
BauI CACGAG 1 cut(s) 584
BbvI GCAGC 1 cut(s) 515
BccI CCATC 1 cut(s) 246
BcoDI GTCTC 3 cut(s) 62, 95, 593
BfaI CTAG 4 cut(s) 5, 359, 545, 603
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 2 cut(s) 504, 523
BlsI GCNGC 2 cut(s) 505, 524
Bme18I GGWCC 2 cut(s) 16, 177
BmgT120I GGNCC 2 cut(s) 16, 177
BmiI GGNNCC 1 cut(s) 499
BmsI GCATC 2 cut(s) 101, 534
BmtI GCTAGC 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 19, 231, 520
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 19, 231, 520
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 20
BseRI GAGGAG 3 cut(s) 434, 602, 605
BseXI GCAGC 1 cut(s) 515
Bsh1236I CGCG 3 cut(s) 522, 530, 532
Bsh1285I CGRYCG 1 cut(s) 554
BshNI GGYRCC 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 554
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 3 cut(s) 62, 95, 593
BsmI GAATGC 1 cut(s) 269
Bsp143I GATC 7 cut(s) 238, 290, 302, 317, 551, 559, 613
BspACI CCGC 8 cut(s) 180, 188, 376, 416, 501, 520, 522, 532
BspFNI CGCG 3 cut(s) 522, 530, 532
BspLI GGNNCC 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 275
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 3 cut(s) 298, 310, 325
BspT107I GGYRCC 1 cut(s) 497
BssECI CCNNGG 3 cut(s) 19, 231, 520
BssMI GATC 7 cut(s) 238, 290, 302, 317, 551, 559, 613
BssSI CACGAG 1 cut(s) 584
Bst2BI CACGAG 1 cut(s) 584
Bst4CI ACNGT 2 cut(s) 119, 247
BstC8I GCNNGC 1 cut(s) 360
BstDSI CCRYGG 2 cut(s) 19, 520
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 3 cut(s) 522, 530, 532
BstHHI GCGC 2 cut(s) 349, 532
BstKTI GATC 7 cut(s) 241, 293, 305, 320, 554, 562, 616
BstMAI GTCTC 3 cut(s) 62, 95, 593
BstMBI GATC 7 cut(s) 238, 290, 302, 317, 551, 559, 613
BstMCI CGRYCG 1 cut(s) 554
BstMWI GCNNNNNNNGC 3 cut(s) 10, 346, 355
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 3 cut(s) 522, 530, 532
BstV1I GCAGC 1 cut(s) 515
BstX2I RGATCY 3 cut(s) 290, 302, 317
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 3 cut(s) 290, 302, 317
BtgI CCRYGG 2 cut(s) 19, 520
BtgZI GCGATG 2 cut(s) 355, 511
BtsCI GGATG 1 cut(s) 196
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 2 cut(s) 349, 532
Cfr13I GGNCC 2 cut(s) 16, 177
Cfr42I CCGCGG 1 cut(s) 523
Csp6I GTAC 1 cut(s) 498
CviAII CATG 1 cut(s) 204
CviJI RGCY 7 cut(s) 32, 130, 166, 256, 274, 358, 362
CviKI_1 RGCY 7 cut(s) 32, 130, 166, 256, 274, 358, 362
CviQI GTAC 1 cut(s) 498
DpnI GATC 7 cut(s) 240, 292, 304, 319, 553, 561, 615
DpnII GATC 7 cut(s) 238, 290, 302, 317, 551, 559, 613
EciI GGCGGA 2 cut(s) 203, 431
Eco47I GGWCC 2 cut(s) 16, 177
EcoT22I ATGCAT 1 cut(s) 269
FaeI CATG 1 cut(s) 207
FaiI YATR 5 cut(s) 111, 141, 173, 175, 205
FatI CATG 1 cut(s) 203
FauI CCCGC 3 cut(s) 369, 525, 527
Fnu4HI GCNGC 2 cut(s) 504, 523
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 504, 523
FspBI CTAG 4 cut(s) 5, 359, 545, 603
GlaI GCGC 2 cut(s) 348, 531
GluI GCNGC 2 cut(s) 504, 523
HapII CCGG 1 cut(s) 14
HhaI GCGC 2 cut(s) 349, 532
Hin1II CATG 1 cut(s) 207
Hin6I GCGC 2 cut(s) 347, 530
HinP1I GCGC 2 cut(s) 347, 530
HinfI GANTC 4 cut(s) 24, 44, 103, 624
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 419
Hpy188I TCNGA 5 cut(s) 39, 214, 471, 618, 644
Hpy188III TCNNGA 3 cut(s) 100, 329, 555
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 2 cut(s) 119, 247
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 3 cut(s) 203, 267, 583
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 346, 355
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 1 cut(s) 207
HspAI GCGC 2 cut(s) 347, 530
KpnI GGTACC 1 cut(s) 501
KspI CCGCGG 1 cut(s) 523
Kzo9I GATC 7 cut(s) 238, 290, 302, 317, 551, 559, 613
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 6 cut(s) 27, 75, 144, 213, 270, 479
Lsp1109I GCAGC 1 cut(s) 515
LweI GCATC 2 cut(s) 101, 534
MaeI CTAG 4 cut(s) 5, 359, 545, 603
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 2 cut(s) 68, 113
MalI GATC 7 cut(s) 240, 292, 304, 319, 553, 561, 615
MboI GATC 7 cut(s) 238, 290, 302, 317, 551, 559, 613
MboII GAAGA 1 cut(s) 312
MflI RGATCY 3 cut(s) 290, 302, 317
MluCI AATT 2 cut(s) 83, 146
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 292
Mph1103I ATGCAT 1 cut(s) 269
MseI TTAA 3 cut(s) 126, 161, 270
MspA1I CMGCKG 2 cut(s) 376, 522
MspI CCGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 269
MvnI CGCG 3 cut(s) 522, 530, 532
MwoI GCNNNNNNNGC 3 cut(s) 10, 346, 355
NdeII GATC 7 cut(s) 238, 290, 302, 317, 551, 559, 613
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 269
PaqCI CACCTGC 1 cut(s) 275
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 3 cut(s) 24, 44, 624
PkrI GCNGC 2 cut(s) 505, 524
Ple19I CGATCG 1 cut(s) 554
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 2 cut(s) 16, 177
PsuI RGATCY 3 cut(s) 290, 302, 317
PvuI CGATCG 1 cut(s) 554
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
SacII CCGCGG 1 cut(s) 523
SaqAI TTAA 3 cut(s) 126, 161, 270
SatI GCNGC 2 cut(s) 504, 523
Sau3AI GATC 7 cut(s) 238, 290, 302, 317, 551, 559, 613
Sau96I GGNCC 2 cut(s) 16, 177
SchI GAGTC 1 cut(s) 97
SetI ASST 9 cut(s) 10, 233, 276, 289, 337, 414, 426, 465, 597
SfaNI GCATC 2 cut(s) 101, 534
SfcI CTRYAG 1 cut(s) 132
Sfr303I CCGCGG 1 cut(s) 523
SgrBI CCGCGG 1 cut(s) 523
SinI GGWCC 2 cut(s) 16, 177
Sse9I AATT 2 cut(s) 83, 146
SsiI CCGC 8 cut(s) 180, 188, 376, 416, 501, 520, 522, 532
SspMI CTAG 4 cut(s) 5, 359, 545, 603
TaaI ACNGT 2 cut(s) 119, 247
TaiI ACGT 1 cut(s) 337
TaqI TCGA 4 cut(s) 99, 241, 258, 554
TasI AATT 2 cut(s) 83, 146
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 3 cut(s) 24, 44, 624
Tru1I TTAA 3 cut(s) 126, 161, 270
Tru9I TTAA 3 cut(s) 126, 161, 270
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 207, 455
TspGWI ACGGA 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 16, 177
XspI CTAG 4 cut(s) 5, 359, 545, 603
Zsp2I ATGCAT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.