Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012695

Physical Location & Seq

Genomic Coordinates Reverse (-)

5766543 .. 5771369

Gene Structure 4827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000806

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTCTGACCGTAAACTTTCTCGTTAACAGTGCTGAAAGTGGCAGCGAGGGTTCATCAGATGGAAGCGAGGAGAATGGTAACCACCAGGAGCAAATGCACAAAATAACACAGCTTTTGGTGCCTGGGAAGCCTGTAGTTTCTGTGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGGAGCTTTGGGCGGTGGTTTGGATATTCCACACAGTGATAAGAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTTGATGCTGAGGTACATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATACATGAGGTTACCTCTCAATGCAGTTACATCTATAACTGATGGCTTGAAGAAATTGTACATTGCAAAACTAAAACCATTGGAAGCTGCATATCGTTTCAATGATTTTGGTAATCCATTACTGAACCTCTCATCCCTTCAAATTAAACACCTCAAGCAAAAGCAGATGAACCATCTCCAGACTTCGATCCTGAAATCATGCGAGGCCTCCTCCTCCACCTCTTCCTTCTCCCTCACCGCCTCGATCCCCTCCTCTTCTTCGCTGTCACCGACGCTCTCGATCCTCTGCCTCCTTACCCTGCTCTGCCTGTCGAACTACCCCTCTGATTTCCCTCCCCGCCGCCGAACCACCCCCATAGCTGATAGCCGATCAAACAGCGCCGCCGCTTCGCCATCGGAATCCACTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

285

Amino Acids

29.9

Weight (kDa)

8.91

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EHD_N	PF16880	163 - 190	1.8e-10	N-terminal EH-domain containing protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0312351
rosa_laevigata	RLG00000000806 RLG00000006339 RLG00000008831 RLG00000009044 RLG00000013629 RLG00000014584 RLG00000024875 RLG00000028857 RLG00000033409
rosa_roxburghii	Rroxscaffold_2G00155440
rosa_samantha	Rh1BG165800 Rh1DG034700 Rh1DG196400 Rh2BG154200 Rh3AG184100 Rh3BG211700 Rh3CG208200 Rh6AG512300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	7 cut(s)	240, 330, 681, 781, 784, 825, 828
AclWI	GGATC	3 cut(s)	625, 682, 718
AcoI	YGGCCR	1 cut(s)	430
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	2 cut(s)	408, 503
AgsI	TTSAA	3 cut(s)	493, 544, 584
AhlI	ACTAGT	1 cut(s)	200
AjnI	CCWGG	2 cut(s)	132, 169
AloI	GAACNNNNNNTCC	2 cut(s)	560, 592
AluBI	AGCT	7 cut(s)	41, 160, 293, 323, 394, 530, 803
AluI	AGCT	7 cut(s)	41, 160, 293, 323, 394, 530, 803
AlwI	GGATC	3 cut(s)	625, 682, 718
AoxI	GGCC	2 cut(s)	430, 648
ApeKI	GCWGC	4 cut(s)	90, 391, 440, 530
AspLEI	GCGC	1 cut(s)	824
AsuHPI	GGTGA	3 cut(s)	314, 670, 702
BalI	TGGCCA	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	286
BarI	GAAGNNNNNNTAC	2 cut(s)	485, 517
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	102, 403, 427, 517
BccI	CCATC	6 cut(s)	29, 101, 295, 479, 624, 844
BciT130I	CCWGG	2 cut(s)	134, 171
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	825
BisI	GCNGC	7 cut(s)	91, 392, 441, 531, 784, 825, 828
BlsI	GCNGC	7 cut(s)	92, 393, 442, 532, 785, 826, 829
Bme1390I	CCNGG	2 cut(s)	134, 171
BmiI	GGNNCC	2 cut(s)	168, 283
BmrFI	CCNGG	2 cut(s)	134, 171
BmsI	GCATC	2 cut(s)	242, 388
BplI	GAGNNNNNCTC	4 cut(s)	442, 474, 638, 670
BpmI	CTGGAG	2 cut(s)	300, 605
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	581
BsaJI	CCNNGG	2 cut(s)	170, 378
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	2 cut(s)	134, 171
BseDI	CCNNGG	2 cut(s)	170, 378
BseGI	GGATG	2 cut(s)	233, 575
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	4 cut(s)	131, 643, 646, 685
BseXI	GCAGC	4 cut(s)	102, 403, 427, 517
BshFI	GGCC	2 cut(s)	432, 650
BshNI	GGYRCC	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	432, 650
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	630, 687, 723, 812
BspACI	CCGC	7 cut(s)	240, 330, 681, 781, 784, 825, 828
BspANI	GGCC	2 cut(s)	432, 650
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	2 cut(s)	168, 283
BspPI	GGATC	3 cut(s)	625, 682, 718
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	504
BsrGI	TGTACA	1 cut(s)	501
BssECI	CCNNGG	2 cut(s)	170, 378
BssMI	GATC	4 cut(s)	630, 687, 723, 812
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	134, 171
Bst4CI	ACNGT	3 cut(s)	58, 77, 353
Bst6I	CTCTTC	2 cut(s)	670, 703
BstAUI	TGTACA	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	402
BstEII	GGTNACC	3 cut(s)	125, 302, 453
BstF5I	GGATG	2 cut(s)	233, 575
BstH2I	RGCGCY	1 cut(s)	825
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	4 cut(s)	633, 690, 726, 815
BstMBI	GATC	4 cut(s)	630, 687, 723, 812
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 175, 239, 254, 290
BstNI	CCWGG	2 cut(s)	134, 171
BstPI	GGTNACC	3 cut(s)	125, 302, 453
BstSCI	CCNGG	2 cut(s)	132, 169
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	102, 403, 427, 517
BsuRI	GGCC	2 cut(s)	432, 650
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	233, 575
BtsIMutI	CAGTG	2 cut(s)	82, 358
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	824
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	407, 502
CviAII	CATG	3 cut(s)	434, 448, 642
CviQI	GTAC	2 cut(s)	407, 502
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	632, 689, 725, 814
DpnII	GATC	4 cut(s)	630, 687, 723, 812
DraIII	CACNNNGTG	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	670, 703
EarI	CTCTTC	2 cut(s)	670, 703
Eco130I	CCWWGG	1 cut(s)	378
Eco147I	AGGCCT	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	286
Eco91I	GGTNACC	3 cut(s)	125, 302, 453
EcoO65I	GGTNACC	3 cut(s)	125, 302, 453
EcoRII	CCWGG	2 cut(s)	132, 169
EcoT14I	CCWWGG	1 cut(s)	378
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	3 cut(s)	437, 451, 645
FatI	CATG	3 cut(s)	433, 447, 641
FauI	CCCGC	2 cut(s)	247, 788
Fnu4HI	GCNGC	7 cut(s)	91, 392, 441, 531, 784, 825, 828
FokI	GGATG	2 cut(s)	220, 562
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	7 cut(s)	91, 392, 441, 531, 784, 825, 828
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	7 cut(s)	91, 392, 441, 531, 784, 825, 828
GsuI	CTGGAG	2 cut(s)	300, 605
HaeII	RGCGCY	1 cut(s)	825
HaeIII	GGCC	2 cut(s)	432, 650
HgaI	GACGC	1 cut(s)	724
HhaI	GCGC	1 cut(s)	824
Hin1II	CATG	3 cut(s)	437, 451, 645
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	313, 842
HpaI	GTTAAC	1 cut(s)	73
HphI	GGTGA	3 cut(s)	314, 670, 702
Hpy166II	GTNNAC	2 cut(s)	61, 73
Hpy188I	TCNGA	5 cut(s)	54, 106, 207, 769, 841
Hpy188III	TCNNGA	5 cut(s)	27, 279, 622, 634, 721
Hpy8I	GTNNAC	2 cut(s)	61, 73
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	2 cut(s)	590, 679
HpyCH4III	ACNGT	3 cut(s)	58, 77, 353
HpyCH4V	TGCA	8 cut(s)	145, 197, 233, 257, 443, 467, 509, 533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 175, 239, 254, 290
HpyF3I	CTNAG	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	437, 451, 645
HspAI	GCGC	1 cut(s)	822
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	630, 687, 723, 812
LmnI	GCTCC	4 cut(s)	38, 136, 281, 320
Lsp1109I	GCAGC	4 cut(s)	102, 403, 427, 517
LweI	GCATC	2 cut(s)	242, 388
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	5 cut(s)	125, 302, 453, 469, 708
MalI	GATC	4 cut(s)	632, 689, 725, 814
MboI	GATC	4 cut(s)	630, 687, 723, 812
MboII	GAAGA	4 cut(s)	505, 657, 690, 693
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	2 cut(s)	497, 585
MluNI	TGGCCA	1 cut(s)	432
Mox20I	TGGCCA	1 cut(s)	432
Mph1103I	ATGCAT	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	2 cut(s)	72, 588
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	2 cut(s)	242, 293
MspR9I	CCNGG	2 cut(s)	134, 171
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	2 cut(s)	134, 171
MwoI	GCNNNNNNNGC	5 cut(s)	166, 175, 239, 254, 290
NdeII	GATC	4 cut(s)	630, 687, 723, 812
NlaIII	CATG	3 cut(s)	437, 451, 645
NlaIV	GGNNCC	2 cut(s)	168, 283
NmuCI	GTSAC	2 cut(s)	302, 708
NsiI	ATGCAT	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	1 cut(s)	710
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	313, 842
PkrI	GCNGC	7 cut(s)	92, 393, 442, 532, 785, 826, 829
Psp6I	CCWGG	2 cut(s)	132, 169
PspEI	GGTNACC	3 cut(s)	125, 302, 453
PspGI	CCWGG	2 cut(s)	132, 169
PspN4I	GGNNCC	2 cut(s)	168, 283
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	2 cut(s)	408, 503
RsaNI	GTAC	2 cut(s)	407, 502
SaqAI	TTAA	2 cut(s)	72, 588
SatI	GCNGC	7 cut(s)	91, 392, 441, 531, 784, 825, 828
Sau3AI	GATC	4 cut(s)	630, 687, 723, 812
ScrFI	CCNGG	2 cut(s)	134, 171
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	2 cut(s)	242, 388
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	2 cut(s)	497, 585
SseBI	AGGCCT	1 cut(s)	650
SsiI	CCGC	7 cut(s)	240, 330, 681, 781, 784, 825, 828
SspMI	CTAG	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	650
StyD4I	CCNGG	2 cut(s)	132, 169
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	3 cut(s)	58, 77, 353
TaqI	TCGA	4 cut(s)	629, 686, 722, 755
TasI	AATT	2 cut(s)	497, 585
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	3 cut(s)	786, 827, 830
TfiI	GAWTC	2 cut(s)	313, 842
Tru1I	TTAA	2 cut(s)	72, 588
Tru9I	TTAA	2 cut(s)	72, 588
TscAI	CASTG	2 cut(s)	82, 358
TseFI	GTSAC	2 cut(s)	302, 708
TseI	GCWGC	4 cut(s)	90, 391, 440, 530
Tsp45I	GTSAC	2 cut(s)	302, 708
TspDTI	ATGAA	3 cut(s)	90, 626, 840
TspRI	CASTG	2 cut(s)	82, 358
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.