Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012695

Physical Location & Seq

Genomic Coordinates Forward (+)

13188439 .. 13190930

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG154200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAATTCTTTGTACCTTGTCGCGACTCCTACTTCAGTACCACCAACAAATCCAGAGTCGGAAGGGAAGGGCGCAGATGGGAAAGAGGGTGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAGTACAGTTAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTGCTGAAAGTGGTAGCGAGGGTTCATCAGATGGAAGCGAGGAGAATGGTAACCACCAGGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTTTAGTTTCTGTGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATACATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATTAGCGGTCGGTGGTGACCATTGGATTCAGAGGATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

163

Amino Acids

16.15

Weight (kDa)

5.66

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0312351
rosa_laevigata	RLG00000000806 RLG00000006339 RLG00000008831 RLG00000009044 RLG00000013629 RLG00000014584 RLG00000024875 RLG00000028857 RLG00000033409
rosa_roxburghii	Rroxscaffold_2G00155440
rosa_samantha	Rh1BG165800 Rh1DG034700 Rh1DG196400 Rh2BG154200 Rh3AG184100 Rh3BG211700 Rh3CG208200 Rh6AG512300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	402, 455
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	18, 78
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	3 cut(s)	14, 39, 127
AfiI	CCNNNNNNNGG	1 cut(s)	454
AhlI	ACTAGT	1 cut(s)	362
AjnI	CCWGG	2 cut(s)	246, 331
AluBI	AGCT	4 cut(s)	116, 182, 276, 323
AluI	AGCT	4 cut(s)	116, 182, 276, 323
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	476
BaeI	ACNNNNGTAYC	2 cut(s)	21, 54
BanII	GRGCYC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	4 cut(s)	71, 170, 215, 290
BciT130I	CCWGG	2 cut(s)	248, 333
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	248, 333
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	2 cut(s)	248, 333
BmsI	GCATC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	108, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	248, 333
BseDI	CCNNGG	2 cut(s)	108, 332
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	2 cut(s)	402, 455
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	445
BspMAI	CTGCAG	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	108, 332
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	248, 333
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	291, 357
BstEII	GGTNACC	2 cut(s)	239, 464
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	74
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 337, 416, 452
BstNI	CCWGG	2 cut(s)	248, 333
BstPI	GGTNACC	2 cut(s)	239, 464
BstSCI	CCNGG	2 cut(s)	246, 331
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	395
BtuMI	TCGCGA	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	291, 357
CfoI	GCGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	13, 38, 126
CviJI	RGCY	8 cut(s)	98, 116, 137, 182, 276, 323, 340, 446
CviKI_1	RGCY	8 cut(s)	98, 116, 137, 182, 276, 323, 340, 446
CviQI	GTAC	3 cut(s)	13, 38, 126
DraIII	CACNNNGTG	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	448
Eco57I	CTGAAG	2 cut(s)	18, 78
Eco91I	GGTNACC	2 cut(s)	239, 464
EcoO65I	GGTNACC	2 cut(s)	239, 464
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	246, 331
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	108
FaiI	YATR	2 cut(s)	255, 374
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	3 cut(s)	25, 56, 475
HphI	GGTGA	1 cut(s)	476
Hpy188I	TCNGA	4 cut(s)	61, 220, 369, 480
Hpy188III	TCNNGA	4 cut(s)	22, 53, 168, 441
HpyAV	CCTTC	3 cut(s)	56, 61, 262
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	6 cut(s)	119, 260, 293, 308, 359, 419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 337, 416, 452
HspAI	GCGC	1 cut(s)	72
LmnI	GCTCC	4 cut(s)	113, 179, 299, 443
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	239, 464
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	2 cut(s)	19, 65
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	79, 202, 223, 422, 474
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	248, 333
MvaI	CCWGG	2 cut(s)	248, 333
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	299, 337, 416, 452
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	464
NruI	TCGCGA	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	19, 64
PpsI	GAGTC	2 cut(s)	19, 64
Psp6I	CCWGG	2 cut(s)	246, 331
PspEI	GGTNACC	2 cut(s)	239, 464
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	246, 331
PspN4I	GGNNCC	1 cut(s)	445
PsrI	GAACNNNNNNTAC	2 cut(s)	196, 228
PstI	CTGCAG	1 cut(s)	121
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	3 cut(s)	14, 39, 127
RsaNI	GTAC	3 cut(s)	13, 38, 126
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	117
SchI	GAGTC	2 cut(s)	19, 65
ScrFI	CCNGG	2 cut(s)	248, 333
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	5 cut(s)	18, 118, 184, 278, 325
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	117
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	2 cut(s)	402, 455
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	246, 331
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	17, 204
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.