Rh1DG196400
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012695
Physical Location & Seq
Forward (+)
38763276 .. 38765793
2518 bp
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UTR
Exon/CDS
Intron
Rh1DG196400.1

Sequence Viewer

Length: 246 bp
ATGGCCGCCGGGAAACGAGACAGAAGGATAGGGAAGTCAACAGAATCTTTGCTCGTCTCTGATGGATTCCAATGGCATTCAGAAAACGCATTAGAGCATCCTCTGTCAGATTCTCCCCTTTCGTTACCTCTCAATGCAGTTACATCTATAACTGATGGCTTGAAGAAATTGTACATTGAAAAACTAAAACCATTGGAAGCTGCATATCGTTTCAATGATTTTGGTAATCCATTACTGATGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

81

Amino Acids

9.0

Weight (kDa)

6.72

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EHD_N PF16880 53 - 79 9.1e-12 N-terminal EH-domain containing protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 3 cut(s) 163, 179, 214
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 2 cut(s) 12, 61
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 56, 149
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 12, 61
BisI GCNGC 2 cut(s) 6, 201
BlsI GCNGC 2 cut(s) 7, 202
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 9
BsmAI GTCTC 2 cut(s) 12, 61
BsmBI CGTCTC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 171
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 171
BstAUI TGTACA 1 cut(s) 171
BstF5I GGATG 1 cut(s) 97
BstMAI GTCTC 2 cut(s) 12, 61
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 97
Csp6I GTAC 1 cut(s) 172
CviJI RGCY 3 cut(s) 5, 159, 200
CviKI_1 RGCY 3 cut(s) 5, 159, 200
CviQI GTAC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 3
Esp3I CGTCTC 1 cut(s) 61
FaiI YATR 2 cut(s) 149, 205
Fnu4HI GCNGC 2 cut(s) 6, 201
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 6, 201
GluI GCNGC 2 cut(s) 6, 201
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 9
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HinfI GANTC 3 cut(s) 44, 66, 110
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 3 cut(s) 61, 82, 109
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 137, 203
LpnPI CCDG 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 2 cut(s) 123, 139
MboII GAAGA 1 cut(s) 175
MluCI AATT 1 cut(s) 167
MnlI CCTC 2 cut(s) 111, 138
MseI TTAA 1 cut(s) 244
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 10
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 44, 66, 110
PkrI GCNGC 2 cut(s) 7, 202
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 244
SatI GCNGC 2 cut(s) 6, 201
ScrFI CCNGG 1 cut(s) 10
SetI ASST 2 cut(s) 130, 202
SfaNI GCATC 1 cut(s) 106
SgeI CNNG 5 cut(s) 21, 22, 29, 65, 172
Sse9I AATT 1 cut(s) 167
SsiI CCGC 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 8
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 44, 66, 110
Tru1I TTAA 1 cut(s) 244
Tru9I TTAA 1 cut(s) 244
TseI GCWGC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.