Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012695

Physical Location & Seq

Genomic Coordinates Reverse (-)

34380839 .. 34383785

Gene Structure 2947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTAACCACCAGGTATGTGTATGCCCTGCAGCCAATACTCCAAGATGTTCTCGAGTTCTTCTACCTTTCTTCAATGGCTAGTAAATTTGTAGTAGCTTTCGCAACTTATCTGCAAATAGCAGCTGGCTCAGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTGTGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGGAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGGAGCTTTGGACGGTGGTTTGGATATTCCACACAGTGATAAAAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTTGATGCTGAGGTACATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATACATGAGGATACCTCTCAATGCAGTTACATCTATAACTGATGGCTTGAAGAAATTGTACATTGAAAAACCAAAACCATTGGAAGCTGCATATCGTTTCAATGATTTTGGAGATTCAATAGAGTTGCTGAAGAGAGCAAAAGAGTTGTCCAAAACACCAGATGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

220

Amino Acids

23.68

Weight (kDa)

7.84

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EHD_N	PF16880	178 - 199	3.5e-07	N-terminal EH-domain containing protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0312351
rosa_laevigata	RLG00000000806 RLG00000006339 RLG00000008831 RLG00000009044 RLG00000013629 RLG00000014584 RLG00000024875 RLG00000028857 RLG00000033409
rosa_roxburghii	Rroxscaffold_2G00155440
rosa_samantha	Rh1BG165800 Rh1DG034700 Rh1DG196400 Rh2BG154200 Rh3AG184100 Rh3BG211700 Rh3CG208200 Rh6AG512300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	638
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	453, 548
AgsI	TTSAA	5 cut(s)	75, 538, 554, 589, 606
AhlI	ACTAGT	1 cut(s)	245
AjnI	CCWGG	2 cut(s)	11, 214
AluBI	AGCT	8 cut(s)	98, 125, 159, 206, 338, 368, 439, 575
AluI	AGCT	8 cut(s)	98, 125, 159, 206, 338, 368, 439, 575
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	5 cut(s)	31, 122, 436, 485, 575
ApoI	RAATTY	1 cut(s)	86
ArsI	GACNNNNNNTTYG	2 cut(s)	620, 652
AsuHPI	GGTGA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	331
BarI	GAAGNNNNNNTAC	2 cut(s)	530, 562
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	5 cut(s)	43, 134, 448, 472, 562
BccI	CCATC	3 cut(s)	173, 340, 524
BciT130I	CCWGG	2 cut(s)	13, 216
BciVI	GTATCC	1 cut(s)	492
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	81, 246
BfmI	CTRYAG	2 cut(s)	29, 225
BfuI	GTATCC	1 cut(s)	492
BisI	GCNGC	5 cut(s)	32, 123, 437, 486, 576
BlsI	GCNGC	5 cut(s)	33, 124, 438, 487, 577
Bme1390I	CCNGG	2 cut(s)	13, 216
BmeT110I	CYCGRG	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	2 cut(s)	13, 216
BmsI	GCATC	3 cut(s)	159, 287, 433
BplI	GAGNNNNNCTC	2 cut(s)	487, 519
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	215, 423
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	13, 216
BseDI	CCNNGG	2 cut(s)	215, 423
BseGI	GGATG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	144, 438
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	5 cut(s)	43, 134, 448, 472, 562
BshFI	GGCC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	546
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	2 cut(s)	143, 439
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	215, 423
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	13, 216
Bst4CI	ACNGT	2 cut(s)	377, 398
Bst6I	CTCTTC	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	127, 174, 240
BstDEI	CTNAG	2 cut(s)	130, 447
BstEII	GGTNACC	2 cut(s)	4, 347
BstF5I	GGATG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 220, 284, 335
BstNI	CCWGG	2 cut(s)	13, 216
BstPI	GGTNACC	2 cut(s)	4, 347
BstSCI	CCNGG	2 cut(s)	11, 214
BstSFI	CTRYAG	2 cut(s)	29, 225
BstV1I	GCAGC	5 cut(s)	43, 134, 448, 472, 562
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	1 cut(s)	477
BtgZI	GCGATG	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	3 cut(s)	127, 174, 240
CsiI	ACCWGGT	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	452, 547
CviAII	CATG	2 cut(s)	479, 493
CviQI	GTAC	2 cut(s)	452, 547
DdeI	CTNAG	2 cut(s)	130, 447
DraIII	CACNNNGTG	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	638
Eco88I	CYCGRG	1 cut(s)	53
Eco91I	GGTNACC	2 cut(s)	4, 347
EcoO65I	GGTNACC	2 cut(s)	4, 347
EcoRII	CCWGG	2 cut(s)	11, 214
EcoT14I	CCWWGG	1 cut(s)	423
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	2 cut(s)	482, 496
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	2 cut(s)	478, 492
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	32, 123, 437, 486, 576
FokI	GGATG	1 cut(s)	265
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	5 cut(s)	32, 123, 437, 486, 576
FspBI	CTAG	2 cut(s)	81, 246
GluI	GCNGC	5 cut(s)	32, 123, 437, 486, 576
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	477
Hin1II	CATG	2 cut(s)	482, 496
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	2 cut(s)	358, 602
HphI	GGTGA	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	133, 252
Hpy188III	TCNNGA	2 cut(s)	53, 324
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	377, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 220, 284, 335
HpyF3I	CTNAG	2 cut(s)	130, 447
Hsp92II	CATG	2 cut(s)	482, 496
LmnI	GCTCC	3 cut(s)	182, 326, 365
Lsp1109I	GCAGC	5 cut(s)	43, 134, 448, 472, 562
LweI	GCATC	3 cut(s)	159, 287, 433
MabI	ACCWGGT	1 cut(s)	11
MaeI	CTAG	2 cut(s)	81, 246
MaeIII	GTNAC	3 cut(s)	4, 347, 514
MboII	GAAGA	4 cut(s)	52, 63, 550, 631
MhlI	GDGCHC	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	2 cut(s)	86, 542
MluNI	TGGCCA	1 cut(s)	477
MnlI	CCTC	5 cut(s)	305, 442, 489, 513, 646
Mox20I	TGGCCA	1 cut(s)	477
Mph1103I	ATGCAT	1 cut(s)	280
MscI	TGGCCA	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	3 cut(s)	125, 287, 338
MspR9I	CCNGG	2 cut(s)	13, 216
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	2 cut(s)	13, 216
MwoI	GCNNNNNNNGC	4 cut(s)	182, 220, 284, 335
NlaIII	CATG	2 cut(s)	482, 496
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	53
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	358, 602
PkrI	GCNGC	5 cut(s)	33, 124, 438, 487, 577
Psp6I	CCWGG	2 cut(s)	11, 214
PspEI	GGTNACC	2 cut(s)	4, 347
PspGI	CCWGG	2 cut(s)	11, 214
PspN4I	GGNNCC	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	33
PvuII	CAGCTG	2 cut(s)	125, 338
RsaI	GTAC	2 cut(s)	453, 548
RsaNI	GTAC	2 cut(s)	452, 547
SatI	GCNGC	5 cut(s)	32, 123, 437, 486, 576
ScrFI	CCNGG	2 cut(s)	13, 216
SduI	GDGCHC	1 cut(s)	331
SexAI	ACCWGGT	1 cut(s)	11
SfaNI	GCATC	3 cut(s)	159, 287, 433
SfcI	CTRYAG	2 cut(s)	29, 225
Sfr274I	CTCGAG	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	2 cut(s)	86, 542
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	2 cut(s)	81, 246
StyD4I	CCNGG	2 cut(s)	11, 214
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	377, 398
TaqI	TCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	86, 542
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	358, 602
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	5 cut(s)	31, 122, 436, 485, 575
Tsp45I	GTSAC	1 cut(s)	347
TspRI	CASTG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	86
XhoI	CTCGAG	1 cut(s)	53
XspI	CTAG	2 cut(s)	81, 246
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.