Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012695

Physical Location & Seq

Genomic Coordinates Reverse (-)

5150525 .. 5151729

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTTTCTCACATTTTTCAGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTGTGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCACCCCCCGCTGGTGCTGGAACTGTAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGGAGCTTTGGACGGTGGTTTGGATATTCCACACAGTGATAAGAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTTGATGCTGAGGTATATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATACATGAGGATACCTCTCAATGCAGTTACATCTATAACTAATGGCTTGAAGAAATTGTACATTGAAAAACTAAAACCATTGGAAGCTGCATATCGTTTCAATGATTTTGGTAATCCATTACTGGTGAGTATTCTCTCATGTTCTAATGTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

161

Amino Acids

17.16

Weight (kDa)

9.24

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EHD_N	PF16880	125 - 151	3.3e-11	N-terminal EH-domain containing protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0312351
rosa_laevigata	RLG00000000806 RLG00000006339 RLG00000008831 RLG00000009044 RLG00000013629 RLG00000014584 RLG00000024875 RLG00000028857 RLG00000033409
rosa_roxburghii	Rroxscaffold_2G00155440
rosa_samantha	Rh1BG165800 Rh1DG034700 Rh1DG196400 Rh2BG154200 Rh3AG184100 Rh3BG211700 Rh3CG208200 Rh6AG512300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	316
AdeI	CACNNNGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	379, 395, 430
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	5 cut(s)	47, 179, 209, 280, 416
AluI	AGCT	5 cut(s)	47, 179, 209, 280, 416
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	277, 326, 416
AsuHPI	GGTGA	2 cut(s)	200, 466
BalI	TGGCCA	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	172
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	289, 313, 403
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	333
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	333
BisI	GCNGC	3 cut(s)	278, 327, 417
BlsI	GCNGC	3 cut(s)	279, 328, 418
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	328, 360
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	56, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	56, 264
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	456
BseXI	GCAGC	3 cut(s)	289, 313, 403
BshFI	GGCC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	387
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	456
BssECI	CCNNGG	2 cut(s)	56, 264
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	3 cut(s)	142, 218, 239
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 125, 176
BstNI	CCWGG	1 cut(s)	57
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	289, 313, 403
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	3 cut(s)	320, 334, 468
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	288
DraIII	CACNNNGTG	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	172
Eco91I	GGTNACC	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	323, 337, 471
FatI	CATG	3 cut(s)	319, 333, 467
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	278, 327, 417
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	3 cut(s)	278, 327, 417
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	3 cut(s)	278, 327, 417
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	323, 337, 471
HinfI	GANTC	1 cut(s)	199
HphI	GGTGA	2 cut(s)	200, 466
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	21, 165
HpyCH4III	ACNGT	3 cut(s)	142, 218, 239
HpyCH4V	TGCA	6 cut(s)	32, 83, 119, 329, 353, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 125, 176
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	323, 337, 471
LmnI	GCTCC	3 cut(s)	23, 167, 206
Lsp1109I	GCAGC	3 cut(s)	289, 313, 403
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	188, 355
MboII	GAAGA	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	172
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	1 cut(s)	383
MluNI	TGGCCA	1 cut(s)	318
MnlI	CCTC	5 cut(s)	146, 240, 283, 330, 354
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	128, 179
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	61, 125, 176
NlaIII	CATG	3 cut(s)	323, 337, 471
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	188
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	279, 328, 418
Psp6I	CCWGG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SatI	GCNGC	3 cut(s)	278, 327, 417
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	8 cut(s)	49, 181, 211, 251, 282, 294, 346, 418
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	66
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	1 cut(s)	383
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	142, 218, 239
TasI	AATT	1 cut(s)	383
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	3 cut(s)	277, 326, 416
Tsp45I	GTSAC	1 cut(s)	188
TspRI	CASTG	1 cut(s)	244
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.