Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012695

Physical Location & Seq

Genomic Coordinates Reverse (-)

17491640 .. 17494423

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG184100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTGCTGAAAGTGGCAGCGAGGGTTCATCAGATGGAAGCGCGGAGAATGGTAACCACCAGGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTTTGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCCGCTGTCGGTGGTGACCATTGGATTCAGGGAGCTTTGGACGGTGGCTTGGATATTCCACACAGTGATAAGAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTTGATGCTGAGGTACATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

155

Amino Acids

15.66

Weight (kDa)

5.9

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0312351
rosa_laevigata	RLG00000000806 RLG00000006339 RLG00000008831 RLG00000009044 RLG00000013629 RLG00000014584 RLG00000024875 RLG00000028857 RLG00000033409
rosa_roxburghii	Rroxscaffold_2G00155440
rosa_samantha	Rh1BG165800 Rh1DG034700 Rh1DG196400 Rh2BG154200 Rh3AG184100 Rh3BG211700 Rh3CG208200 Rh6AG512300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	3 cut(s)	89, 261, 312
AcoI	YGGCCR	1 cut(s)	451
AdeI	CACNNNGTG	2 cut(s)	50, 374
AfaI	GTAC	1 cut(s)	429
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	105, 190
AluBI	AGCT	5 cut(s)	41, 135, 182, 344, 415
AluI	AGCT	5 cut(s)	41, 135, 182, 344, 415
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	3 cut(s)	63, 412, 461
AspLEI	GCGC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	307
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	75, 424, 448
BccI	CCATC	4 cut(s)	29, 74, 149, 316
BciT130I	CCWGG	2 cut(s)	107, 192
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	3 cut(s)	64, 413, 462
BlsI	GCNGC	3 cut(s)	65, 414, 463
Bme1390I	CCNGG	2 cut(s)	107, 192
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	107, 192
BmsI	GCATC	3 cut(s)	135, 263, 409
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	191, 399
BseBI	CCWGG	2 cut(s)	107, 192
BseDI	CCNNGG	2 cut(s)	191, 399
BseGI	GGATG	2 cut(s)	254, 308
BseMII	CTCAG	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	75, 424, 448
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	307
BspACI	CCGC	3 cut(s)	89, 261, 312
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	191, 399
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	107, 192
Bst4CI	ACNGT	2 cut(s)	353, 374
BstC8I	GCNNGC	2 cut(s)	150, 216
BstDEI	CTNAG	1 cut(s)	423
BstEII	GGTNACC	2 cut(s)	98, 323
BstF5I	GGATG	2 cut(s)	254, 308
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 196, 260, 275, 311
BstNI	CCWGG	2 cut(s)	107, 192
BstPI	GGTNACC	2 cut(s)	98, 323
BstSCI	CCNGG	2 cut(s)	105, 190
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	75, 424, 448
BstXI	CCANNNNNNTGG	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	453
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	254, 308
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	150, 216
CfoI	GCGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	1 cut(s)	455
CviJI	RGCY	9 cut(s)	41, 135, 182, 199, 305, 344, 357, 415, 453
CviKI_1	RGCY	9 cut(s)	41, 135, 182, 199, 305, 344, 357, 415, 453
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	1 cut(s)	423
DraIII	CACNNNGTG	2 cut(s)	50, 374
EaeI	YGGCCR	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	307
Eco91I	GGTNACC	2 cut(s)	98, 323
EcoO65I	GGTNACC	2 cut(s)	98, 323
EcoRII	CCWGG	2 cut(s)	105, 190
EcoT14I	CCWWGG	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	1 cut(s)	458
FaiI	YATR	6 cut(s)	114, 233, 441, 447, 456, 466
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	1 cut(s)	454
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	64, 413, 462
FokI	GGATG	2 cut(s)	241, 295
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	3 cut(s)	64, 413, 462
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	64, 413, 462
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	79, 228
Hpy188III	TCNNGA	2 cut(s)	27, 300
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	353, 374
HpyCH4V	TGCA	7 cut(s)	119, 152, 167, 218, 254, 278, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 196, 260, 275, 311
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	87
LmnI	GCTCC	4 cut(s)	38, 158, 302, 341
Lsp1109I	GCAGC	3 cut(s)	75, 424, 448
LweI	GCATC	3 cut(s)	135, 263, 409
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	98, 323
MhlI	GDGCHC	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	453
MluNI	TGGCCA	1 cut(s)	453
MnlI	CCTC	4 cut(s)	61, 281, 375, 418
Mox20I	TGGCCA	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	453
MspA1I	CMGCKG	2 cut(s)	263, 314
MspR9I	CCNGG	2 cut(s)	107, 192
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	107, 192
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	158, 196, 260, 275, 311
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	65, 414, 463
Psp6I	CCWGG	2 cut(s)	105, 190
PspEI	GGTNACC	2 cut(s)	98, 323
PspGI	CCWGG	2 cut(s)	105, 190
PspN4I	GGNNCC	1 cut(s)	304
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SatI	GCNGC	3 cut(s)	64, 413, 462
ScrFI	CCNGG	2 cut(s)	107, 192
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	7 cut(s)	43, 137, 184, 346, 386, 417, 429
SfaNI	GCATC	3 cut(s)	135, 263, 409
SfcI	CTRYAG	1 cut(s)	201
SpeI	ACTAGT	1 cut(s)	221
SsiI	CCGC	3 cut(s)	89, 261, 312
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	105, 190
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	353, 374
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	3 cut(s)	63, 412, 461
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.