Rh6AG512300
BZIP Family

G-box-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012695
Physical Location & Seq
Reverse (-)
68260055 .. 68263398
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG512300.1

Sequence Viewer

Length: 660 bp
ATGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTGCTGAAAGTGGCAGCGAGGGTTCATCAGATGGAAGCGAGGAGAATGGTAACCACCAGGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTGTGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATTTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGGAGCTTTGGACGGTGGTTTGGATATTCCACACAGTAATAAGAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAACTTGATGCTGAGGTACATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATACATGAGGATATCTCTCAATGCAGTTACATCTATAACTGATGGCTTGAAGAAATTGTACATTGAAAAACTAAAACCATTGGAAGCTGCATACCGTTTCAATGATTTTGGTAATCCATTACTGGGTTTATGGTTCAATGATAGAAACGCAGCTCAGAGTTTCCTTCAGTTTGTCGCTATATATCAGTTTGTATAA

Protein Analysis

219

Amino Acids

23.18

Weight (kDa)

6.51

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EHD_N PF16880 170 - 196 4.2e-11 N-terminal EH-domain containing protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 614
AdeI CACNNNGTG 1 cut(s) 50
AfaI GTAC 2 cut(s) 429, 524
AfiI CCNNNNNNNGG 1 cut(s) 587
AgsI TTSAA 4 cut(s) 514, 530, 565, 601
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 2 cut(s) 105, 190
AluBI AGCT 7 cut(s) 41, 135, 182, 314, 344, 551, 617
AluI AGCT 7 cut(s) 41, 135, 182, 314, 344, 551, 617
AoxI GGCC 1 cut(s) 451
ApeKI GCWGC 4 cut(s) 63, 461, 551, 614
AsuHPI GGTGA 1 cut(s) 335
BalI TGGCCA 1 cut(s) 453
BanII GRGCYC 1 cut(s) 307
BarI GAAGNNNNNNTAC 2 cut(s) 506, 538
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 4 cut(s) 75, 448, 538, 626
BccI CCATC 5 cut(s) 29, 74, 149, 316, 500
BciT130I CCWGG 2 cut(s) 107, 192
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 4 cut(s) 64, 462, 552, 615
BlsI GCNGC 4 cut(s) 65, 463, 553, 616
Bme1390I CCNGG 2 cut(s) 107, 192
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 107, 192
BmrI ACTGGG 1 cut(s) 596
BmsI GCATC 3 cut(s) 135, 263, 409
BmuI ACTGGG 1 cut(s) 596
BplI GAGNNNNNCTC 2 cut(s) 463, 495
Bpu10I CCTNAGC 1 cut(s) 423
BsaJI CCNNGG 2 cut(s) 191, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 591
BseBI CCWGG 2 cut(s) 107, 192
BseDI CCNNGG 2 cut(s) 191, 399
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 587
BseMII CTCAG 2 cut(s) 414, 632
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 4 cut(s) 75, 448, 538, 626
BshFI GGCC 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 587
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 453
Bsp1286I GDGCHC 1 cut(s) 307
Bsp1407I TGTACA 1 cut(s) 522
BspACI CCGC 1 cut(s) 261
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 2 cut(s) 415, 631
BspLI GGNNCC 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 191, 399
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 107, 192
Bst4CI ACNGT 3 cut(s) 353, 374, 560
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 150, 216
BstDEI CTNAG 2 cut(s) 423, 618
BstEII GGTNACC 2 cut(s) 98, 323
BstF5I GGATG 1 cut(s) 254
BstMWI GCNNNNNNNGC 5 cut(s) 158, 196, 260, 275, 311
BstNI CCWGG 2 cut(s) 107, 192
BstPI GGTNACC 2 cut(s) 98, 323
BstSCI CCNGG 2 cut(s) 105, 190
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 4 cut(s) 75, 448, 538, 626
BstXI CCANNNNNNTGG 1 cut(s) 113
BsuRI GGCC 1 cut(s) 453
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 150, 216
Csp6I GTAC 2 cut(s) 428, 523
CviAII CATG 2 cut(s) 455, 469
CviQI GTAC 2 cut(s) 428, 523
DdeI CTNAG 2 cut(s) 423, 618
DraIII CACNNNGTG 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 307
Eco32I GATATC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 614
Eco91I GGTNACC 2 cut(s) 98, 323
EcoO65I GGTNACC 2 cut(s) 98, 323
EcoRII CCWGG 2 cut(s) 105, 190
EcoRV GATATC 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 2 cut(s) 458, 472
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 2 cut(s) 454, 468
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 4 cut(s) 64, 462, 552, 615
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 4 cut(s) 64, 462, 552, 615
FspBI CTAG 1 cut(s) 222
GluI GCNGC 4 cut(s) 64, 462, 552, 615
HaeIII GGCC 1 cut(s) 453
Hin1II CATG 2 cut(s) 458, 472
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 1 cut(s) 334
HphI GGTGA 1 cut(s) 335
Hpy188I TCNGA 3 cut(s) 79, 228, 621
Hpy188III TCNNGA 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 121, 638
HpyCH4III ACNGT 3 cut(s) 353, 374, 560
HpyCH4V TGCA 9 cut(s) 119, 152, 167, 218, 254, 278, 464, 488, 554
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 196, 260, 275, 311
HpyF3I CTNAG 2 cut(s) 423, 618
Hsp92II CATG 2 cut(s) 458, 472
LmnI GCTCC 4 cut(s) 38, 158, 302, 341
Lsp1109I GCAGC 4 cut(s) 75, 448, 538, 626
LweI GCATC 3 cut(s) 135, 263, 409
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 3 cut(s) 98, 323, 490
MboII GAAGA 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 307
MlsI TGGCCA 1 cut(s) 453
MluCI AATT 2 cut(s) 296, 518
MluNI TGGCCA 1 cut(s) 453
MnlI CCTC 6 cut(s) 61, 82, 281, 375, 418, 465
Mox20I TGGCCA 1 cut(s) 453
Mph1103I ATGCAT 1 cut(s) 256
MscI TGGCCA 1 cut(s) 453
Msp20I TGGCCA 1 cut(s) 453
MspA1I CMGCKG 2 cut(s) 263, 314
MspR9I CCNGG 2 cut(s) 107, 192
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 107, 192
MwoI GCNNNNNNNGC 5 cut(s) 158, 196, 260, 275, 311
NlaIII CATG 2 cut(s) 458, 472
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 323
NsiI ATGCAT 1 cut(s) 256
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 4 cut(s) 65, 463, 553, 616
Psp6I CCWGG 2 cut(s) 105, 190
PspEI GGTNACC 2 cut(s) 98, 323
PspGI CCWGG 2 cut(s) 105, 190
PspN4I GGNNCC 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 2 cut(s) 429, 524
RsaNI GTAC 2 cut(s) 428, 523
SatI GCNGC 4 cut(s) 64, 462, 552, 615
ScrFI CCNGG 2 cut(s) 107, 192
SduI GDGCHC 1 cut(s) 307
SetI ASST 9 cut(s) 43, 137, 184, 316, 346, 386, 429, 553, 619
SfaNI GCATC 3 cut(s) 135, 263, 409
SfcI CTRYAG 1 cut(s) 201
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 2 cut(s) 296, 518
SsiI CCGC 1 cut(s) 261
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 105, 190
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 3 cut(s) 353, 374, 560
TasI AATT 2 cut(s) 296, 518
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 1 cut(s) 334
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 4 cut(s) 63, 461, 551, 614
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XspI CTAG 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.