Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0012695

Physical Location & Seq

Genomic Coordinates Reverse (-)

29408900 .. 29411080

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028857

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCAGCGAGGGTTCATCAGATGGAAGCGAGGAGAATGGTAACCACCAGGGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGTGAAGCCTGTAGTTTCTGTGCCTGCAACTAGTCTAAATATGAGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAACTGTCGGTGGTGACCATTGGATTCAGGGAGCTTTGGACGGTGGTTTGGATATTCCACACAGTGATAAGAGGTTTGCTGGTTTCTCCAAGGACAATAAGCAGCTTGATGCTAAGGTACATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATACATGAGGGTCCAATATTTTTGTGTTCATCTGCACACATACTACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

153

Amino Acids

16.64

Weight (kDa)

9.75

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0312351
rosa_laevigata	RLG00000000806 RLG00000006339 RLG00000008831 RLG00000009044 RLG00000013629 RLG00000014584 RLG00000024875 RLG00000028857 RLG00000033409
rosa_roxburghii	Rroxscaffold_2G00155440
rosa_samantha	Rh1BG165800 Rh1DG034700 Rh1DG196400 Rh2BG154200 Rh3AG184100 Rh3BG211700 Rh3CG208200 Rh6AG512300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	394
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	372
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	78, 125, 287, 358
AluI	AGCT	4 cut(s)	78, 125, 287, 358
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	3 cut(s)	5, 355, 404
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	17, 367, 391
BccI	CCATC	3 cut(s)	16, 92, 259
BciT130I	CCWGG	1 cut(s)	49
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	3 cut(s)	6, 356, 405
BlsI	GCNGC	3 cut(s)	7, 357, 406
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	247, 419
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	3 cut(s)	78, 206, 352
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	48, 342
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	48, 342
BseGI	GGATG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	17, 367, 391
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	247, 419
BssECI	CCNNGG	2 cut(s)	48, 342
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	259, 296, 317
BstC8I	GCNNGC	2 cut(s)	93, 159
BstDEI	CTNAG	1 cut(s)	366
BstEII	GGTNACC	2 cut(s)	40, 266
BstF5I	GGATG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 139, 203, 218
BstNI	CCWGG	1 cut(s)	49
BstPI	GGTNACC	2 cut(s)	40, 266
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	17, 367, 391
BsuRI	GGCC	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	93, 159
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	2 cut(s)	398, 412
CviJI	RGCY	7 cut(s)	78, 125, 142, 248, 287, 358, 396
CviKI_1	RGCY	7 cut(s)	78, 125, 142, 248, 287, 358, 396
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	366
DraIII	CACNNNGTG	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	418
Eco91I	GGTNACC	2 cut(s)	40, 266
EcoO65I	GGTNACC	2 cut(s)	40, 266
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	401, 415
FaiI	YATR	8 cut(s)	57, 176, 384, 390, 399, 409, 413, 448
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	2 cut(s)	397, 411
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	6, 356, 405
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	3 cut(s)	6, 356, 405
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	3 cut(s)	6, 356, 405
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	401, 415
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	1 cut(s)	277
HphI	GGTGA	1 cut(s)	278
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	259, 296, 317
HpyCH4V	TGCA	8 cut(s)	62, 95, 110, 161, 197, 221, 407, 442
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 139, 203, 218
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	401, 415
LmnI	GCTCC	3 cut(s)	101, 245, 284
Lsp1109I	GCAGC	3 cut(s)	17, 367, 391
LweI	GCATC	3 cut(s)	78, 206, 352
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	40, 266
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	396
MluNI	TGGCCA	1 cut(s)	396
MnlI	CCTC	5 cut(s)	3, 24, 224, 318, 408
Mox20I	TGGCCA	1 cut(s)	396
Mph1103I	ATGCAT	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	4 cut(s)	101, 139, 203, 218
NlaIII	CATG	2 cut(s)	401, 415
NlaIV	GGNNCC	2 cut(s)	247, 419
NmuCI	GTSAC	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	199
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	7, 357, 406
Psp6I	CCWGG	1 cut(s)	47
PspEI	GGTNACC	2 cut(s)	40, 266
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	247, 419
PspPI	GGNCC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SatI	GCNGC	3 cut(s)	6, 356, 405
Sau96I	GGNCC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	6 cut(s)	80, 127, 289, 329, 360, 372
SfaNI	GCATC	3 cut(s)	78, 206, 352
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	418
SpeI	ACTAGT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	204
SspI	AATATT	1 cut(s)	425
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	259, 296, 317
TfiI	GAWTC	1 cut(s)	277
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	3 cut(s)	5, 355, 404
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	5, 425
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	418
XspI	CTAG	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.