Rroxscaffold_2G00155440

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012695
Physical Location & Seq
Reverse (-)
91840352 .. 91840852
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155440.1

Sequence Viewer

Length: 219 bp
ATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCACTGTCGGTGGGAGCTTTGGACGGTGGCTTGGATATTCCACACAGTGATAAGAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTAGATGCTGAGGTACATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18_c Ribosomal_L5e

Protein Analysis

72

Amino Acids

7.5

Weight (kDa)

8.12

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 30
AcoI YGGCCR 1 cut(s) 202
AdeI CACNNNGTG 1 cut(s) 125
AfaI GTAC 1 cut(s) 180
AluBI AGCT 2 cut(s) 95, 166
AluI AGCT 2 cut(s) 95, 166
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 163, 212
BalI TGGCCA 1 cut(s) 204
BanII GRGCYC 1 cut(s) 76
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 175, 199
BccI CCATC 1 cut(s) 85
BfaI CTAG 1 cut(s) 167
BisI GCNGC 2 cut(s) 164, 213
BlsI GCNGC 2 cut(s) 165, 214
BmiI GGNNCC 1 cut(s) 73
BmsI GCATC 2 cut(s) 32, 160
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 175, 199
BshFI GGCC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 76
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 84, 104, 125
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 29, 44
BstV1I GCAGC 2 cut(s) 175, 199
BsuRI GGCC 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 2 cut(s) 80, 130
Csp6I GTAC 1 cut(s) 179
CviAII CATG 1 cut(s) 206
CviJI RGCY 5 cut(s) 74, 95, 108, 166, 204
CviKI_1 RGCY 5 cut(s) 74, 95, 108, 166, 204
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 174
DraIII CACNNNGTG 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 192, 198, 207, 217
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 164, 213
FokI GGATG 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 2 cut(s) 164, 213
FspBI CTAG 1 cut(s) 167
GluI GCNGC 2 cut(s) 164, 213
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 69
HpyCH4III ACNGT 3 cut(s) 84, 104, 125
HpyCH4V TGCA 3 cut(s) 23, 47, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 44
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 209
LmnI GCTCC 2 cut(s) 71, 92
LpnPI CCDG 4 cut(s) 18, 24, 54, 126
Lsp1109I GCAGC 2 cut(s) 175, 199
LweI GCATC 2 cut(s) 32, 160
MaeI CTAG 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 204
MluNI TGGCCA 1 cut(s) 204
MnlI CCTC 3 cut(s) 50, 126, 169
Mox20I TGGCCA 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 25
MscI TGGCCA 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 29, 44
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 25
PctI GAATGC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 165, 214
PspN4I GGNNCC 1 cut(s) 73
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SatI GCNGC 2 cut(s) 164, 213
SduI GDGCHC 1 cut(s) 76
SetI ASST 4 cut(s) 97, 137, 168, 180
SfaNI GCATC 2 cut(s) 32, 160
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 84, 104, 125
TscAI CASTG 2 cut(s) 87, 130
TseI GCWGC 2 cut(s) 163, 212
TspRI CASTG 2 cut(s) 87, 130
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.