RLG00000024875
BZIP Family

G-box-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012695
Physical Location & Seq
Forward (+)
39961080 .. 39964289
3210 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024875

Sequence Viewer

Length: 675 bp
ATGGAAGCGAGGAGAATGGTAACCACCAGGTATGTGTATGCCCTGCAGCCAATACTCCAAGATGTTCTCGAGTTCTTCTACCTTTCTTCAATGGCTAGTAAATTTGTAGTAGCTTTCGCAACTTATCTGCAAATAGCAGCTGGCTCAGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTGTGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGGAGCTTTGGACGGTGGTTTGGATATTCCACACAGTGATAAGAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTTGATGCTGAGGTACATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATACATGAGGATACCTCTCAATGCAGTTACATCTATAACTGATGGCTTGAAGAAATTGTACATTGAAAAACCAAAACCATTGGAAGCTGCATATCGTTTCAATGATTTTGGAGATTCAATAGAGTTGCTGAAGAGAGCAAAAGAGTTGTCCAAAACACCAGATGAGGAGTAG

Protein Analysis

225

Amino Acids

24.34

Weight (kDa)

8.6

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EHD_N PF16880 183 - 204 3.7e-07 N-terminal EH-domain containing protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 653
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 2 cut(s) 468, 563
AgsI TTSAA 5 cut(s) 90, 553, 569, 604, 621
AhlI ACTAGT 1 cut(s) 260
AjnI CCWGG 2 cut(s) 26, 229
AluBI AGCT 8 cut(s) 113, 140, 174, 221, 353, 383, 454, 590
AluI AGCT 8 cut(s) 113, 140, 174, 221, 353, 383, 454, 590
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 5 cut(s) 46, 137, 451, 500, 590
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AsuHPI GGTGA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 68
BalI TGGCCA 1 cut(s) 492
BanII GRGCYC 1 cut(s) 346
BarI GAAGNNNNNNTAC 2 cut(s) 545, 577
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 5 cut(s) 58, 149, 463, 487, 577
BccI CCATC 3 cut(s) 188, 355, 539
BciT130I CCWGG 2 cut(s) 28, 231
BciVI GTATCC 1 cut(s) 507
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 2 cut(s) 96, 261
BfmI CTRYAG 2 cut(s) 44, 240
BfuI GTATCC 1 cut(s) 507
BisI GCNGC 5 cut(s) 47, 138, 452, 501, 591
BlsI GCNGC 5 cut(s) 48, 139, 453, 502, 592
Bme1390I CCNGG 2 cut(s) 28, 231
BmeT110I CYCGRG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 2 cut(s) 28, 231
BmsI GCATC 3 cut(s) 174, 302, 448
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 230, 438
BseBI CCWGG 2 cut(s) 28, 231
BseDI CCNNGG 2 cut(s) 230, 438
BseGI GGATG 1 cut(s) 293
BseMII CTCAG 2 cut(s) 159, 453
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 5 cut(s) 58, 149, 463, 487, 577
BshFI GGCC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 68
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 346
Bsp1407I TGTACA 1 cut(s) 561
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 2 cut(s) 158, 454
BspLI GGNNCC 1 cut(s) 343
BspMAI CTGCAG 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 561
BssECI CCNNGG 2 cut(s) 230, 438
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 28, 231
Bst4CI ACNGT 2 cut(s) 392, 413
Bst6I CTCTTC 1 cut(s) 629
BstAUI TGTACA 1 cut(s) 561
BstC8I GCNNGC 3 cut(s) 142, 189, 255
BstDEI CTNAG 2 cut(s) 145, 462
BstEII GGTNACC 2 cut(s) 19, 362
BstF5I GGATG 1 cut(s) 293
BstMWI GCNNNNNNNGC 5 cut(s) 197, 235, 299, 314, 350
BstNI CCWGG 2 cut(s) 28, 231
BstPI GGTNACC 2 cut(s) 19, 362
BstSCI CCNGG 2 cut(s) 26, 229
BstSFI CTRYAG 2 cut(s) 44, 240
BstV1I GCAGC 5 cut(s) 58, 149, 463, 487, 577
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 1 cut(s) 492
BtgZI GCGATG 1 cut(s) 455
BtsCI GGATG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 3 cut(s) 142, 189, 255
CsiI ACCWGGT 1 cut(s) 26
Csp6I GTAC 2 cut(s) 467, 562
CviAII CATG 2 cut(s) 494, 508
CviQI GTAC 2 cut(s) 467, 562
DdeI CTNAG 2 cut(s) 145, 462
DraIII CACNNNGTG 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 653
Eco88I CYCGRG 1 cut(s) 68
Eco91I GGTNACC 2 cut(s) 19, 362
EcoO65I GGTNACC 2 cut(s) 19, 362
EcoRII CCWGG 2 cut(s) 26, 229
EcoT14I CCWWGG 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 2 cut(s) 497, 511
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 2 cut(s) 493, 507
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 5 cut(s) 47, 138, 452, 501, 591
FokI GGATG 1 cut(s) 280
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 5 cut(s) 47, 138, 452, 501, 591
FspBI CTAG 2 cut(s) 96, 261
GluI GCNGC 5 cut(s) 47, 138, 452, 501, 591
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 492
Hin1II CATG 2 cut(s) 497, 511
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 2 cut(s) 373, 617
HphI GGTGA 1 cut(s) 374
Hpy188I TCNGA 2 cut(s) 148, 267
Hpy188III TCNNGA 2 cut(s) 68, 339
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 392, 413
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 235, 299, 314, 350
HpyF3I CTNAG 2 cut(s) 145, 462
Hsp92II CATG 2 cut(s) 497, 511
LmnI GCTCC 3 cut(s) 197, 341, 380
Lsp1109I GCAGC 5 cut(s) 58, 149, 463, 487, 577
LweI GCATC 3 cut(s) 174, 302, 448
MabI ACCWGGT 1 cut(s) 26
MaeI CTAG 2 cut(s) 96, 261
MaeIII GTNAC 3 cut(s) 19, 362, 529
MboII GAAGA 4 cut(s) 67, 78, 565, 646
MhlI GDGCHC 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 2 cut(s) 101, 557
MluNI TGGCCA 1 cut(s) 492
MnlI CCTC 7 cut(s) 3, 320, 414, 457, 504, 528, 661
Mox20I TGGCCA 1 cut(s) 492
Mph1103I ATGCAT 1 cut(s) 295
MscI TGGCCA 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 492
MspA1I CMGCKG 3 cut(s) 140, 302, 353
MspR9I CCNGG 2 cut(s) 28, 231
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 2 cut(s) 28, 231
MwoI GCNNNNNNNGC 5 cut(s) 197, 235, 299, 314, 350
NlaIII CATG 2 cut(s) 497, 511
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 295
PaeR7I CTCGAG 1 cut(s) 68
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 373, 617
PkrI GCNGC 5 cut(s) 48, 139, 453, 502, 592
Psp6I CCWGG 2 cut(s) 26, 229
PspEI GGTNACC 2 cut(s) 19, 362
PspGI CCWGG 2 cut(s) 26, 229
PspN4I GGNNCC 1 cut(s) 343
PstI CTGCAG 1 cut(s) 48
PvuII CAGCTG 2 cut(s) 140, 353
RsaI GTAC 2 cut(s) 468, 563
RsaNI GTAC 2 cut(s) 467, 562
SatI GCNGC 5 cut(s) 47, 138, 452, 501, 591
ScrFI CCNGG 2 cut(s) 28, 231
SduI GDGCHC 1 cut(s) 346
SexAI ACCWGGT 1 cut(s) 26
SfaNI GCATC 3 cut(s) 174, 302, 448
SfcI CTRYAG 2 cut(s) 44, 240
Sfr274I CTCGAG 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 2 cut(s) 101, 557
SsiI CCGC 1 cut(s) 300
SspMI CTAG 2 cut(s) 96, 261
StyD4I CCNGG 2 cut(s) 26, 229
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 392, 413
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 101, 557
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 2 cut(s) 373, 617
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 5 cut(s) 46, 137, 451, 500, 590
Tsp45I GTSAC 1 cut(s) 362
TspRI CASTG 1 cut(s) 418
XapI RAATTY 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 68
XspI CTAG 2 cut(s) 96, 261
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.