Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012695

Physical Location & Seq

Genomic Coordinates Reverse (-)

19074467 .. 19075699

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTGCTGAAAGTGGCAGCGAGGGTTCATCAGATGGAAGCGCGGAGAATGGTAACCACCAGGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTTTGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCCGCTGTCGGTGGTGACCATTGGATTCAGGGAGCTTTGGACGGTGGCTTGGATATTCCACACAGTGATAAGAGGTTTGCTGGTTTCTCCAAGGACAACAAGCAGCTTGATGCTGAGGTACATCGCAAGTATATCTATGGTGGCCATGTTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

155

Amino Acids

15.66

Weight (kDa)

5.9

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012695)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0312351
rosa_laevigata	RLG00000000806 RLG00000006339 RLG00000008831 RLG00000009044 RLG00000013629 RLG00000014584 RLG00000024875 RLG00000028857 RLG00000033409
rosa_roxburghii	Rroxscaffold_2G00155440
rosa_samantha	Rh1BG165800 Rh1DG034700 Rh1DG196400 Rh2BG154200 Rh3AG184100 Rh3BG211700 Rh3CG208200 Rh6AG512300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	3 cut(s)	89, 261, 312
AcoI	YGGCCR	1 cut(s)	451
AdeI	CACNNNGTG	2 cut(s)	50, 374
AfaI	GTAC	1 cut(s)	429
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	105, 190
AluBI	AGCT	5 cut(s)	41, 135, 182, 344, 415
AluI	AGCT	5 cut(s)	41, 135, 182, 344, 415
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	3 cut(s)	63, 412, 461
AspLEI	GCGC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	307
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	75, 424, 448
BccI	CCATC	4 cut(s)	29, 74, 149, 316
BciT130I	CCWGG	2 cut(s)	107, 192
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	3 cut(s)	64, 413, 462
BlsI	GCNGC	3 cut(s)	65, 414, 463
Bme1390I	CCNGG	2 cut(s)	107, 192
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	107, 192
BmsI	GCATC	3 cut(s)	135, 263, 409
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	191, 399
BseBI	CCWGG	2 cut(s)	107, 192
BseDI	CCNNGG	2 cut(s)	191, 399
BseGI	GGATG	2 cut(s)	254, 308
BseMII	CTCAG	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	75, 424, 448
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	307
BspACI	CCGC	3 cut(s)	89, 261, 312
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	191, 399
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	107, 192
Bst4CI	ACNGT	2 cut(s)	353, 374
BstC8I	GCNNGC	2 cut(s)	150, 216
BstDEI	CTNAG	1 cut(s)	423
BstEII	GGTNACC	2 cut(s)	98, 323
BstF5I	GGATG	2 cut(s)	254, 308
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 196, 260, 275, 311
BstNI	CCWGG	2 cut(s)	107, 192
BstPI	GGTNACC	2 cut(s)	98, 323
BstSCI	CCNGG	2 cut(s)	105, 190
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	75, 424, 448
BstXI	CCANNNNNNTGG	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	453
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	254, 308
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	150, 216
CfoI	GCGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	1 cut(s)	455
CviJI	RGCY	9 cut(s)	41, 135, 182, 199, 305, 344, 357, 415, 453
CviKI_1	RGCY	9 cut(s)	41, 135, 182, 199, 305, 344, 357, 415, 453
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	1 cut(s)	423
DraIII	CACNNNGTG	2 cut(s)	50, 374
EaeI	YGGCCR	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	307
Eco91I	GGTNACC	2 cut(s)	98, 323
EcoO65I	GGTNACC	2 cut(s)	98, 323
EcoRII	CCWGG	2 cut(s)	105, 190
EcoT14I	CCWWGG	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	1 cut(s)	458
FaiI	YATR	6 cut(s)	114, 233, 441, 447, 456, 466
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	1 cut(s)	454
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	64, 413, 462
FokI	GGATG	2 cut(s)	241, 295
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	3 cut(s)	64, 413, 462
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	64, 413, 462
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	79, 228
Hpy188III	TCNNGA	2 cut(s)	27, 300
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	353, 374
HpyCH4V	TGCA	7 cut(s)	119, 152, 167, 218, 254, 278, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 196, 260, 275, 311
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	87
LmnI	GCTCC	4 cut(s)	38, 158, 302, 341
Lsp1109I	GCAGC	3 cut(s)	75, 424, 448
LweI	GCATC	3 cut(s)	135, 263, 409
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	98, 323
MhlI	GDGCHC	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	453
MluNI	TGGCCA	1 cut(s)	453
MnlI	CCTC	4 cut(s)	61, 281, 375, 418
Mox20I	TGGCCA	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	453
MspA1I	CMGCKG	2 cut(s)	263, 314
MspR9I	CCNGG	2 cut(s)	107, 192
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	107, 192
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	158, 196, 260, 275, 311
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	65, 414, 463
Psp6I	CCWGG	2 cut(s)	105, 190
PspEI	GGTNACC	2 cut(s)	98, 323
PspGI	CCWGG	2 cut(s)	105, 190
PspN4I	GGNNCC	1 cut(s)	304
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SatI	GCNGC	3 cut(s)	64, 413, 462
ScrFI	CCNGG	2 cut(s)	107, 192
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	7 cut(s)	43, 137, 184, 346, 386, 417, 429
SfaNI	GCATC	3 cut(s)	135, 263, 409
SfcI	CTRYAG	1 cut(s)	201
SpeI	ACTAGT	1 cut(s)	221
SsiI	CCGC	3 cut(s)	89, 261, 312
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	105, 190
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	353, 374
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	3 cut(s)	63, 412, 461
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.