RLG00000001194

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016464
Physical Location & Seq
Forward (+)
11739806 .. 11741970
2165 bp
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UTR
Exon/CDS
Intron
RLM00000001194

Sequence Viewer

Length: 486 bp
ATGGTGTGGTGCCGAGACAGCAAACCTCACCTCTTTGGTGATAAGCAGACTCTTATATCCTTGTCAGACAAGAAGGATCTTGCTTTCTTATGGAATGGACTTGAGGTCTTGCACCCACAGTCCATGAGACTGACTAGGGAAGATGATATTCCTGCTGTACTAACTAGCATCATGTTGAAAAGGAATGTGACCATGTTGGATATTGTTAGCACTCACATGCTTGGTCGATATGGTTTTCTTGCTGAGCTAGATAAGTACAAATGCTATGTTGCTGAGGTTAATGCTATAAAGGTGTCATGCTATAAAGAGGAGGTTTTGAATTCAAAGAAGAATCTCAGCAAAGAAAAGCTACCCAGAAATGTGCCAAATGTTTCTTCGCTGCTGTTCTTTAAGTACAACACTGCTATGGAGATGTTTTACCGGGTTTTGATGGATACCAACTTCATCAATTTCTCTATCCAGAATAAGGTGAGTGGTTGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

162

Amino Acids

18.71

Weight (kDa)

9.02

Isoelectric Point (pI)

21.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 9
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 3 cut(s) 159, 257, 395
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 3 cut(s) 178, 319, 324
AhdI GACNNNNNGTC 1 cut(s) 104
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AluBI AGCT 2 cut(s) 247, 349
AluI AGCT 2 cut(s) 247, 349
Alw26I GTCTC 2 cut(s) 9, 121
AlwI GGATC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 319
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 3 cut(s) 20, 50, 481
BanI GGYRCC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 366
BccI CCATC 1 cut(s) 424
BciVI GTATCC 1 cut(s) 427
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 9, 121
BfaI CTAG 3 cut(s) 135, 165, 248
BfuI GTATCC 1 cut(s) 427
BisI GCNGC 1 cut(s) 380
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 422
BmeRI GACNNNNNGTC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 3 cut(s) 234, 264, 349
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 2 cut(s) 9, 121
Bsp143I GATC 1 cut(s) 76
Bsp1720I GCTNAGC 1 cut(s) 243
BspCNI CTCAG 3 cut(s) 235, 265, 348
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 9
BssMI GATC 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 243, 273, 335
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 9, 121
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuI GTATCC 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Csp6I GTAC 3 cut(s) 158, 256, 394
CviAII CATG 5 cut(s) 124, 172, 193, 217, 297
CviJI RGCY 2 cut(s) 247, 349
CviKI_1 RGCY 2 cut(s) 247, 349
CviQI GTAC 3 cut(s) 158, 256, 394
DdeI CTNAG 3 cut(s) 243, 273, 335
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DriI GACNNNNNGTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 319
FaeI CATG 5 cut(s) 127, 175, 196, 220, 300
FatI CATG 5 cut(s) 123, 171, 192, 216, 296
Fnu4HI GCNGC 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 3 cut(s) 135, 165, 248
GluI GCNGC 1 cut(s) 380
HapII CCGG 1 cut(s) 421
Hin1II CATG 5 cut(s) 127, 175, 196, 220, 300
HinfI GANTC 2 cut(s) 49, 331
HpaII CCGG 1 cut(s) 421
HphI GGTGA 3 cut(s) 20, 50, 481
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 460
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 3 cut(s) 243, 273, 335
Hsp92II CATG 5 cut(s) 127, 175, 196, 220, 300
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 165, 367, 434, 473
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 1 cut(s) 177
MaeI CTAG 3 cut(s) 135, 165, 248
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 152, 340, 366
MflI RGATCY 1 cut(s) 76
MluCI AATT 2 cut(s) 319, 448
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 6 cut(s) 36, 41, 97, 268, 301, 304
MseI TTAA 2 cut(s) 279, 390
MslI CAYNNNNRTG 2 cut(s) 215, 404
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 422
NdeII GATC 1 cut(s) 76
NlaIII CATG 5 cut(s) 127, 175, 196, 220, 300
NlaIV GGNNCC 1 cut(s) 11
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 220
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 3 cut(s) 159, 257, 395
RsaNI GTAC 3 cut(s) 158, 256, 394
RseI CAYNNNNRTG 2 cut(s) 215, 404
SaqAI TTAA 2 cut(s) 279, 390
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 1 cut(s) 76
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 422
SetI ASST 9 cut(s) 28, 33, 108, 249, 279, 294, 315, 351, 471
SfaNI GCATC 1 cut(s) 177
SmiMI CAYNNNNRTG 2 cut(s) 215, 404
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 319, 448
SspMI CTAG 3 cut(s) 135, 165, 248
StyD4I CCNGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 226
TasI AATT 2 cut(s) 319, 448
TatI WGTACW 3 cut(s) 157, 255, 393
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 2 cut(s) 279, 390
Tru9I TTAA 2 cut(s) 279, 390
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 433
TspRI CASTG 1 cut(s) 406
XapI RAATTY 1 cut(s) 319
XceI RCATGY 1 cut(s) 220
XspI CTAG 3 cut(s) 135, 165, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.