RLG00000034808

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016464
Physical Location & Seq
Forward (+)
54939428 .. 54941577
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034808

Sequence Viewer

Length: 474 bp
ATGGTGTGGTGCCGACACAGCAAACCTCACCTCTTTGGTGATCAGCAGACTCTTATATCCTTGTTAGACAAGAAGGGTCTTGCTTTCTTATGGAATGGACTTGAGGTCTTGCACCCACAGTCCATGAGACTGACTAGGGATGATGATATTCCTGTGAGGGCTGTACTAACTAGCATCATATTGAACTGGAATGTGACCATGTTGGATATTGTTAGCACTCACATGCTTGGTCGATATGGTTTTCTTGCTGAGTTAGATAAGTACAAATGCTATGTTGCTGAGGTTAATGCTATAAAGGTGTCATGCTATAAAGAGGAGGTTTTGAATTCAAAGAAGAATCTCAGCAAAGAAAAGCTACCCAGAAATGTGCCAAATGTTTCTTCGCTACTGTTCTTTAAGTACAACACTGCTATGGAGATGTTTTACCGGGTTTTGATGGATACCAACTTCATCAATTTCTCTATCCAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

158

Amino Acids

18.32

Weight (kDa)

9.15

Isoelectric Point (pI)

17.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 9
AcsI RAATTY 1 cut(s) 325
AfaI GTAC 3 cut(s) 165, 263, 401
AgsI TTSAA 3 cut(s) 184, 325, 330
AhdI GACNNNNNGTC 1 cut(s) 104
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 2 cut(s) 20, 50
BanI GGYRCC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 430
BciVI GTATCC 1 cut(s) 433
BclI TGATCA 1 cut(s) 40
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 2 cut(s) 135, 171
BfuI GTATCC 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 428
BmeRI GACNNNNNGTC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 3 cut(s) 240, 270, 355
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 40
BspCNI CTCAG 3 cut(s) 241, 271, 354
BspLI GGNNCC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 191
BssMI GATC 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 120, 390
BstDEI CTNAG 3 cut(s) 249, 279, 341
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 426
BsuI GTATCC 1 cut(s) 433
BtsCI GGATG 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Csp6I GTAC 3 cut(s) 164, 262, 400
CviAII CATG 4 cut(s) 124, 199, 223, 303
CviJI RGCY 2 cut(s) 161, 355
CviKI_1 RGCY 2 cut(s) 161, 355
CviQI GTAC 3 cut(s) 164, 262, 400
DdeI CTNAG 3 cut(s) 249, 279, 341
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DriI GACNNNNNGTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 325
FaeI CATG 4 cut(s) 127, 202, 226, 306
FatI CATG 4 cut(s) 123, 198, 222, 302
FbaI TGATCA 1 cut(s) 40
FokI GGATG 1 cut(s) 152
FspBI CTAG 2 cut(s) 135, 171
HapII CCGG 1 cut(s) 427
Hin1II CATG 4 cut(s) 127, 202, 226, 306
HinfI GANTC 2 cut(s) 49, 337
HpaII CCGG 1 cut(s) 427
HphI GGTGA 2 cut(s) 20, 50
Hpy188III TCNNGA 1 cut(s) 466
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 120, 390
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 3 cut(s) 249, 279, 341
Hsp92II CATG 4 cut(s) 127, 202, 226, 306
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 165, 172, 373, 440
LweI GCATC 1 cut(s) 183
MaeI CTAG 2 cut(s) 135, 171
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 2 cut(s) 346, 372
MluCI AATT 2 cut(s) 325, 454
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 8 cut(s) 36, 41, 97, 150, 274, 307, 310, 462
MseI TTAA 2 cut(s) 285, 396
MslI CAYNNNNRTG 2 cut(s) 221, 410
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 428
NdeII GATC 1 cut(s) 40
NlaIII CATG 4 cut(s) 127, 202, 226, 306
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 226
PfeI GAWTC 1 cut(s) 337
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 11
RsaI GTAC 3 cut(s) 165, 263, 401
RsaNI GTAC 3 cut(s) 164, 262, 400
RseI CAYNNNNRTG 2 cut(s) 221, 410
SaqAI TTAA 2 cut(s) 285, 396
Sau3AI GATC 1 cut(s) 40
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 428
SetI ASST 8 cut(s) 28, 33, 108, 285, 300, 321, 357, 473
SfaNI GCATC 1 cut(s) 183
SmiMI CAYNNNNRTG 2 cut(s) 221, 410
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 325, 454
SspMI CTAG 2 cut(s) 135, 171
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 120, 390
TaqI TCGA 1 cut(s) 232
TasI AATT 2 cut(s) 325, 454
TatI WGTACW 3 cut(s) 163, 261, 399
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 2 cut(s) 285, 396
Tru9I TTAA 2 cut(s) 285, 396
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 439
TspRI CASTG 1 cut(s) 412
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 226
XspI CTAG 2 cut(s) 135, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.