RLG00000024378

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016464
Physical Location & Seq
Forward (+)
35311577 .. 35315157
3581 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024378

Sequence Viewer

Length: 501 bp
ATGGAAAAGGAATCTGACAATTTTGGTGCTGCACGCCTGCACATAGCAACGTCAACACACTTCAGTCTAGGTGATCAGCAGACTCTTATATCCTTGTTAGACAAGAAGGGTCTTGCTTTCTTATGGAATGGACTTGAGGTCTTGCACCCACAGTCCATGAGACTGACTAGGGAAGATGATATTCCTGCTGTACTAACTAGCATCATATTGAACTGGAATGTGACCATGTTGGATATTGTTAGCACTCACATGCTTGGTCGATATGGTTTTCTTGCTGAGCTAGATAAGTACAAATGCTATGTTGCTGAGGTTAATGCTATAAAGGTGTCATGCTATAAAGAGGAGGTTTTGAATTCAAAGAAGAATCTCAGCAAAGAAAAGCTACCCAGAAATGTGCCAAATGTTTCTTCGCTACTGTTCTTTAAGTACAACACTGCTATGGAGATGTTTTACCGGGTTTTGATGGATACCAACTTCATCAATTTCTCTATCCAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

167

Amino Acids

19.1

Weight (kDa)

7.77

Isoelectric Point (pI)

19.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 46
AfaI GTAC 3 cut(s) 192, 290, 428
AgsI TTSAA 3 cut(s) 211, 352, 357
AhdI GACNNNNNGTC 1 cut(s) 137
AjuI GAANNNNNNNTTGG 2 cut(s) 391, 423
AluBI AGCT 2 cut(s) 280, 382
AluI AGCT 2 cut(s) 280, 382
Alw26I GTCTC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 457
BciVI GTATCC 1 cut(s) 460
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 4 cut(s) 68, 168, 198, 281
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 1 cut(s) 30
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 455
BmeRI GACNNNNNGTC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 306
Bpu1102I GCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 455
Bse1I ACTGG 1 cut(s) 218
BseMII CTCAG 3 cut(s) 267, 297, 382
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 2 cut(s) 15, 23
BsiSI CCGG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 276
BspCNI CTCAG 3 cut(s) 268, 298, 381
BsrI ACTGG 1 cut(s) 218
BssMI GATC 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 153, 417
BstC8I GCNNGC 2 cut(s) 34, 38
BstDEI CTNAG 3 cut(s) 276, 306, 368
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 16
BsuI GTATCC 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 34, 38
Csp6I GTAC 3 cut(s) 191, 289, 427
CviAII CATG 4 cut(s) 157, 226, 250, 330
CviJI RGCY 2 cut(s) 280, 382
CviKI_1 RGCY 2 cut(s) 280, 382
CviQI GTAC 3 cut(s) 191, 289, 427
DdeI CTNAG 3 cut(s) 276, 306, 368
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DriI GACNNNNNGTC 1 cut(s) 137
Eam1105I GACNNNNNGTC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 352
FaeI CATG 4 cut(s) 160, 229, 253, 333
FatI CATG 4 cut(s) 156, 225, 249, 329
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 4 cut(s) 68, 168, 198, 281
GluI GCNGC 1 cut(s) 30
HapII CCGG 1 cut(s) 454
Hin1II CATG 4 cut(s) 160, 229, 253, 333
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 3 cut(s) 11, 82, 364
HpaII CCGG 1 cut(s) 454
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 153, 417
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 3 cut(s) 32, 40, 145
HpyF3I CTNAG 3 cut(s) 276, 306, 368
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 4 cut(s) 160, 229, 253, 333
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 50, 198, 199, 400, 467
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 210
MaeI CTAG 4 cut(s) 68, 168, 198, 281
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 3 cut(s) 185, 373, 399
MluCI AATT 3 cut(s) 19, 352, 481
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 5 cut(s) 130, 301, 334, 337, 489
MseI TTAA 2 cut(s) 312, 423
MslI CAYNNNNRTG 2 cut(s) 248, 437
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 1 cut(s) 455
NciI CCSGG 1 cut(s) 455
NdeII GATC 1 cut(s) 73
NlaIII CATG 4 cut(s) 160, 229, 253, 333
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 253
PfeI GAWTC 2 cut(s) 11, 364
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
RsaI GTAC 3 cut(s) 192, 290, 428
RsaNI GTAC 3 cut(s) 191, 289, 427
RseI CAYNNNNRTG 2 cut(s) 248, 437
SaqAI TTAA 2 cut(s) 312, 423
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 455
SetI ASST 9 cut(s) 53, 73, 141, 282, 312, 327, 348, 384, 500
SfaNI GCATC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 248, 437
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 19, 352, 481
SspMI CTAG 4 cut(s) 68, 168, 198, 281
StyD4I CCNGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 153, 417
TaiI ACGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 259
TasI AATT 3 cut(s) 19, 352, 481
TatI WGTACW 3 cut(s) 190, 288, 426
TfiI GAWTC 2 cut(s) 11, 364
Tru1I TTAA 2 cut(s) 312, 423
Tru9I TTAA 2 cut(s) 312, 423
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 466
TspRI CASTG 1 cut(s) 439
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 253
XspI CTAG 4 cut(s) 68, 168, 198, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.