RLG00000009585

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016464
Physical Location & Seq
Forward (+)
54940896 .. 54945001
4106 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009585

Sequence Viewer

Length: 516 bp
ATGTCTATGCCGGAGATGATGAATTCCCCAAACCATGATGAGCTACTTGACCAAGATTTTAAGTATTATCTTGTGCCAGAAAAGTTTGCCGGTGAGGAAGATAACACTGGCGATTGTGATAAGCAGACTCTTATATCCTTGTCAGACAAGAAGGATCTTGCTTTCTTATGGAATGGACTTGAGGCTGTACTAACTAGCATCATGTTGAAAAGGAATGTTACCATGTTGGATATTGTTAGCACTCACATGCTTGGTCGATATGGTTTTCTTGCTGAGCTCGATAAGTACAAATGCTATGTTGCTGAGGTTAATGCTATAAAGGTGTCATGCTATAAAGAGGAGGTTTTGAATTCAAAGAAGAATCTCAGCAAAGAAAAGCTACCCAGAAATGTGCCAAATGTTTCTTCACTGCTGTTCTTTAAGTACAACACTGCTATGGAGATGTTTTACCGGGTTTTGATGGATACCAACTTCATCAATTTCTCTATCCAGAATAAGGTGAGTGGTTGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

172

Amino Acids

19.79

Weight (kDa)

5.46

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 2 cut(s) 22, 349
AfaI GTAC 3 cut(s) 189, 287, 425
AfiI CCNNNNNNNGG 1 cut(s) 496
AgsI TTSAA 3 cut(s) 208, 349, 354
AjuI GAANNNNNNNTTGG 2 cut(s) 388, 420
AluBI AGCT 3 cut(s) 43, 277, 379
AluI AGCT 3 cut(s) 43, 277, 379
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 22, 349
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 104, 511
BanII GRGCYC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 303
BccI CCATC 1 cut(s) 454
BciVI GTATCC 1 cut(s) 457
BcnI CCSGG 1 cut(s) 452
BfaI CTAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 457
BlpI GCTNAGC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 452
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 303
Bpu1102I GCTNAGC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 452
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMII CTCAG 3 cut(s) 264, 294, 379
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 3 cut(s) 11, 90, 451
BslI CCNNNNNNNGG 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 154
Bsp1720I GCTNAGC 1 cut(s) 273
BspCNI CTCAG 3 cut(s) 265, 295, 378
BspPI GGATC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 1 cut(s) 154
BstDEI CTNAG 3 cut(s) 273, 303, 365
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuI GTATCC 1 cut(s) 457
BtsI GCAGTG 2 cut(s) 407, 429
BtsIMutI CAGTG 3 cut(s) 105, 407, 429
Cfr10I RCCGGY 1 cut(s) 89
Csp6I GTAC 3 cut(s) 188, 286, 424
CviAII CATG 5 cut(s) 35, 202, 223, 247, 327
CviJI RGCY 4 cut(s) 43, 185, 277, 379
CviKI_1 RGCY 4 cut(s) 43, 185, 277, 379
CviQI GTAC 3 cut(s) 188, 286, 424
DdeI CTNAG 3 cut(s) 273, 303, 365
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 277
EcoRI GAATTC 2 cut(s) 22, 349
EcoT38I GRGCYC 1 cut(s) 279
FaeI CATG 5 cut(s) 38, 205, 226, 250, 330
FatI CATG 5 cut(s) 34, 201, 222, 246, 326
FriOI GRGCYC 1 cut(s) 279
FspBI CTAG 1 cut(s) 195
HapII CCGG 3 cut(s) 11, 90, 451
Hin1II CATG 5 cut(s) 38, 205, 226, 250, 330
HinfI GANTC 2 cut(s) 127, 361
HpaII CCGG 3 cut(s) 11, 90, 451
HphI GGTGA 2 cut(s) 104, 511
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 490
HpyAV CCTTC 1 cut(s) 145
HpyF3I CTNAG 3 cut(s) 273, 303, 365
Hsp92II CATG 5 cut(s) 38, 205, 226, 250, 330
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 7 cut(s) 24, 90, 93, 103, 397, 464, 503
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 110, 370, 396
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 3 cut(s) 22, 349, 478
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 5 cut(s) 88, 175, 298, 331, 334
MseI TTAA 3 cut(s) 60, 309, 420
MslI CAYNNNNRTG 2 cut(s) 245, 434
MspI CCGG 3 cut(s) 11, 90, 451
MspR9I CCNGG 1 cut(s) 452
NciI CCSGG 1 cut(s) 452
NdeII GATC 1 cut(s) 154
NlaIII CATG 5 cut(s) 38, 205, 226, 250, 330
NspI RCATGY 1 cut(s) 250
PfeI GAWTC 1 cut(s) 361
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 279
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 3 cut(s) 189, 287, 425
RsaNI GTAC 3 cut(s) 188, 286, 424
RseI CAYNNNNRTG 2 cut(s) 245, 434
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 3 cut(s) 60, 309, 420
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 279
SetI ASST 7 cut(s) 45, 279, 309, 324, 345, 381, 501
SfaNI GCATC 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 245, 434
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 3 cut(s) 22, 349, 478
SspMI CTAG 1 cut(s) 195
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 450
TaqI TCGA 2 cut(s) 256, 279
TasI AATT 3 cut(s) 22, 349, 478
TatI WGTACW 3 cut(s) 187, 285, 423
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 3 cut(s) 60, 309, 420
Tru9I TTAA 3 cut(s) 60, 309, 420
TscAI CASTG 3 cut(s) 112, 414, 436
TspDTI ATGAA 2 cut(s) 35, 463
TspRI CASTG 3 cut(s) 112, 414, 436
XapI RAATTY 2 cut(s) 22, 349
XceI RCATGY 1 cut(s) 250
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.