RLG00000015005

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016464
Physical Location & Seq
Forward (+)
60495364 .. 60497806
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015005

Sequence Viewer

Length: 585 bp
ATGAGAGTTTCAAAAGCCATGTTATTTTTAGGCGTAGACCATCCTCGAGGCTTTGGTGATTCGAGTTTGGCTTTGGTGGAGTGGCGGATCTGTCGTTGCGTTCTTCTGGATCTCCGCTTTCTTTGTTTGGCTAATTCTGCACTCTTAGGTGATCAGCAGACTCTTATATCCTTGTTAGACAAGAAGGGTCTTGCTTTCTTATGGAATGGACTTGAGGTCTTGCACCCACAGTCCATGAGACTGACTAGGGAAGATGATATTCCTGTGAGGGCTGTACTAACTAGCATCATATTGAACTGGAATGTGACCATGTTGGATATTGTTAGCACTCACATGCTTGGTCGATATGGTTTTCTTGCTGAGCTAGATAAGTACAAATGCTATGTTGCTGAGGTTAATGCTATAAAGGTGTCATGCTATAAAGAGGAGGTTTTGAATTCAAAGAAGAATCTCAGCAAAGAAAAGCTACCCAGAAATGTGCCAAATGTTTCTTCGCTACTGTTCTTTAAGTACAACACTGCTATGGAGATGTTTTACCGGGTTTTGATGGATACCAACTTCATCAATTTCTCTATCCAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

195

Amino Acids

22.3

Weight (kDa)

8.98

Isoelectric Point (pI)

17.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 45
AccI GTMKAC 1 cut(s) 36
AciI CCGC 2 cut(s) 85, 115
AclWI GGATC 2 cut(s) 95, 117
AcsI RAATTY 1 cut(s) 436
AfaI GTAC 3 cut(s) 276, 374, 512
AgsI TTSAA 4 cut(s) 12, 295, 436, 441
AhdI GACNNNNNGTC 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 475, 507
AluBI AGCT 2 cut(s) 364, 466
AluI AGCT 2 cut(s) 364, 466
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 2 cut(s) 95, 117
Ama87I CYCGRG 1 cut(s) 45
ApoI RAATTY 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 539
AsuHPI GGTGA 2 cut(s) 68, 161
AvaI CYCGRG 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 390
BccI CCATC 2 cut(s) 48, 541
BciVI GTATCC 1 cut(s) 544
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 3 cut(s) 246, 282, 365
BfuI GTATCC 1 cut(s) 544
BlpI GCTNAGC 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 539
BmeRI GACNNNNNGTC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 390
Bpu1102I GCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 539
Bse1I ACTGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 40
BseMII CTCAG 3 cut(s) 351, 381, 466
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 538
BsmAI GTCTC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 45
Bsp143I GATC 3 cut(s) 87, 109, 151
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 2 cut(s) 85, 115
BspCNI CTCAG 3 cut(s) 352, 382, 465
BspPI GGATC 2 cut(s) 95, 117
BsrI ACTGG 1 cut(s) 302
BssMI GATC 3 cut(s) 87, 109, 151
Bst4CI ACNGT 2 cut(s) 231, 501
BstDEI CTNAG 4 cut(s) 145, 360, 390, 452
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 3 cut(s) 90, 112, 154
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 3 cut(s) 87, 109, 151
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 537
BstX2I RGATCY 2 cut(s) 87, 109
BstYI RGATCY 2 cut(s) 87, 109
BsuI GTATCC 1 cut(s) 544
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 1 cut(s) 516
Csp6I GTAC 3 cut(s) 275, 373, 511
CviAII CATG 5 cut(s) 19, 235, 310, 334, 414
CviJI RGCY 7 cut(s) 17, 51, 71, 131, 272, 364, 466
CviKI_1 RGCY 7 cut(s) 17, 51, 71, 131, 272, 364, 466
CviQI GTAC 3 cut(s) 275, 373, 511
DdeI CTNAG 4 cut(s) 145, 360, 390, 452
DpnI GATC 3 cut(s) 89, 111, 153
DpnII GATC 3 cut(s) 87, 109, 151
DriI GACNNNNNGTC 1 cut(s) 215
Eam1105I GACNNNNNGTC 1 cut(s) 215
EciI GGCGGA 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 436
FaeI CATG 5 cut(s) 22, 238, 313, 337, 417
FatI CATG 5 cut(s) 18, 234, 309, 333, 413
FbaI TGATCA 1 cut(s) 151
FblI GTMKAC 1 cut(s) 36
FokI GGATG 1 cut(s) 27
FspBI CTAG 3 cut(s) 246, 282, 365
HapII CCGG 1 cut(s) 538
Hin1II CATG 5 cut(s) 22, 238, 313, 337, 417
HinfI GANTC 3 cut(s) 59, 160, 448
HpaII CCGG 1 cut(s) 538
HphI GGTGA 2 cut(s) 68, 161
Hpy166II GTNNAC 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 107, 577
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 231, 501
HpyCH4V TGCA 2 cut(s) 140, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 4 cut(s) 145, 360, 390, 452
Hsp92II CATG 5 cut(s) 22, 238, 313, 337, 417
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 3 cut(s) 87, 109, 151
LpnPI CCDG 5 cut(s) 92, 276, 283, 484, 551
LweI GCATC 1 cut(s) 294
MaeI CTAG 3 cut(s) 246, 282, 365
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 89, 111, 153
MboI GATC 3 cut(s) 87, 109, 151
MboII GAAGA 4 cut(s) 95, 263, 457, 483
MflI RGATCY 2 cut(s) 87, 109
MluCI AATT 3 cut(s) 133, 436, 565
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 8 cut(s) 41, 54, 208, 261, 385, 418, 421, 573
MseI TTAA 2 cut(s) 396, 507
MslI CAYNNNNRTG 2 cut(s) 332, 521
MspI CCGG 1 cut(s) 538
MspR9I CCNGG 1 cut(s) 539
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 539
NdeII GATC 3 cut(s) 87, 109, 151
NlaIII CATG 5 cut(s) 22, 238, 313, 337, 417
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 337
PaeR7I CTCGAG 1 cut(s) 45
PfeI GAWTC 2 cut(s) 59, 448
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PspXI VCTCGAGB 1 cut(s) 45
PsuI RGATCY 2 cut(s) 87, 109
RsaI GTAC 3 cut(s) 276, 374, 512
RsaNI GTAC 3 cut(s) 275, 373, 511
RseI CAYNNNNRTG 2 cut(s) 332, 521
SaqAI TTAA 2 cut(s) 396, 507
Sau3AI GATC 3 cut(s) 87, 109, 151
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 539
SetI ASST 8 cut(s) 151, 219, 366, 396, 411, 432, 468, 584
SfaNI GCATC 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 45
SlaI CTCGAG 1 cut(s) 45
SmiMI CAYNNNNRTG 2 cut(s) 332, 521
SmlI CTYRAG 2 cut(s) 45, 212
SmoI CTYRAG 2 cut(s) 45, 212
Sse9I AATT 3 cut(s) 133, 436, 565
SsiI CCGC 2 cut(s) 85, 115
SspMI CTAG 3 cut(s) 246, 282, 365
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 2 cut(s) 231, 501
TaqI TCGA 3 cut(s) 46, 62, 343
TasI AATT 3 cut(s) 133, 436, 565
TatI WGTACW 3 cut(s) 274, 372, 510
TfiI GAWTC 2 cut(s) 59, 448
Tru1I TTAA 2 cut(s) 396, 507
Tru9I TTAA 2 cut(s) 396, 507
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 550
TspRI CASTG 1 cut(s) 523
XapI RAATTY 1 cut(s) 436
XceI RCATGY 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 3 cut(s) 246, 282, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.