RLG00000033061

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016464
Physical Location & Seq
Reverse (-)
22789892 .. 22796092
6201 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033061

Sequence Viewer

Length: 864 bp
ATGCTTCCCTGGCCTGGTTTTACCTTCACCACTCATGGTCCTTTTGAAGATTCTATTGGGTTCGGGTTTGATGCTATGACCAATGACTACAAGGTTGTTCGACTTGTCACTCTTGAGAATCTTGTAGATGAAGATGCGGAAAATCCAACCGTAGCTGAGGTTTATTCACTAGCCACAGGCTCGTGGAGAAGTCTTGGTTCTGTTGGTCTTCCTGAGTCATTTCGCAAGATATTGATACCAATTGGTACCAAATTGGGCTTCAATTCTCGAGTTTCTGTTACAGGAGATGGGAAATATCTTGCTTTGTTCACGTGGTATAATGATAAGAATGATATTAGTTATCTTGATATTTGGGTTATGAAAGAGTATTGCCAGCAGGAGTCCTGGACCAAAATGATAACTCTCGCTCCACAAGGTGATAAGCAGACTCTTATATCCTTGTCAGACAAGAAGGATCTTGCTTTCTTATGGAATGGACTTGAGGTCTTGCACCCACAGTCCATGAGACTGACTAGGGAAGATGATATTCCTGCTGTACTAACTAGCATCATGTTGAAAAGGAATGTGACCATGTTGGATATTGTTAGCACTCACATGCTTGGTCGATATGGTTTTCTTGCTGAGCTAGATAAGTACAAATGCTATGTTGCTGAGGTTAATGCTATAAAGGTGTCATGCTATAAAGAGGAGGTTTTGAATTCAAAGAAGAATCTCAGCAAAGAAAAGCTACCCAGAAATGTGCCAAATGTTTCTTCGCTGCTGTTCTTTAAGTACAACACTGCTATGGAGATGTTTTACCGGGTTTTGATGGATACCAACTTCATCAATTTCTCTATCCAGAATAAGGTGAGTGGTTGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

288

Amino Acids

32.8

Weight (kDa)

6.0

Isoelectric Point (pI)

22.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 1 cut(s) 137
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 1 cut(s) 697
AcvI CACGTG 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 4 cut(s) 247, 537, 635, 773
AfiI CCNNNNNNNGG 2 cut(s) 14, 844
AgsI TTSAA 5 cut(s) 47, 262, 556, 697, 702
AhdI GACNNNNNGTC 1 cut(s) 482
AjnI CCWGG 3 cut(s) 8, 13, 383
AjuI GAANNNNNNNTTGG 6 cut(s) 39, 71, 242, 274, 736, 768
AluBI AGCT 3 cut(s) 155, 625, 727
AluI AGCT 3 cut(s) 155, 625, 727
Alw26I GTCTC 1 cut(s) 499
AlwI GGATC 1 cut(s) 462
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 757
ApoI RAATTY 1 cut(s) 697
Asp718I GGTACC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 38, 387
AsuC2I CCSGG 1 cut(s) 800
AsuHPI GGTGA 3 cut(s) 19, 428, 859
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 2 cut(s) 38, 387
BanI GGYRCC 1 cut(s) 245
BauI CACGAG 1 cut(s) 181
BbrPI CACGTG 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 200
BbvCI CCTCAGC 2 cut(s) 156, 651
BbvI GCAGC 1 cut(s) 744
BccI CCATC 2 cut(s) 281, 802
BciT130I CCWGG 3 cut(s) 10, 15, 385
BciVI GTATCC 1 cut(s) 805
BcnI CCSGG 1 cut(s) 800
BcoDI GTCTC 1 cut(s) 499
BfaI CTAG 4 cut(s) 170, 513, 543, 626
BfuI GTATCC 1 cut(s) 805
BisI GCNGC 1 cut(s) 758
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 759
Bme1390I CCNGG 4 cut(s) 10, 15, 385, 800
Bme18I GGWCC 2 cut(s) 38, 387
BmeRI GACNNNNNGTC 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 38, 387
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 4 cut(s) 10, 15, 385, 800
BmsI GCATC 3 cut(s) 61, 124, 555
BpiI GAAGAC 1 cut(s) 200
Bpu10I CCTNAGC 2 cut(s) 156, 651
Bpu1102I GCTNAGC 1 cut(s) 621
BpuEI CTTGAG 2 cut(s) 134, 500
BpuMI CCSGG 1 cut(s) 800
BsaAI YACGTR 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 844
BseBI CCWGG 3 cut(s) 10, 15, 385
BseDI CCNNGG 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 14, 844
BseMII CTCAG 5 cut(s) 147, 204, 612, 642, 727
BseRI GAGGAG 1 cut(s) 701
BseXI GCAGC 1 cut(s) 744
BshFI GGCC 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 1 cut(s) 799
BslI CCNNNNNNNGG 2 cut(s) 14, 844
BsmAI GTCTC 1 cut(s) 499
BsnI GGCC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 267
Bsp143I GATC 1 cut(s) 454
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 5 cut(s) 148, 205, 613, 643, 726
BspLI GGNNCC 1 cut(s) 247
BspPI GGATC 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 454
BssSI CACGAG 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 181
Bst2UI CCWGG 3 cut(s) 10, 15, 385
Bst4CI ACNGT 2 cut(s) 151, 498
BstBAI YACGTR 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 374
BstDEI CTNAG 5 cut(s) 156, 213, 621, 651, 713
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 3 cut(s) 10, 15, 385
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 4 cut(s) 8, 13, 383, 798
BstV1I GCAGC 1 cut(s) 744
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuI GTATCC 1 cut(s) 805
BsuRI GGCC 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 1 cut(s) 777
Cac8I GCNNGC 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 38, 387
Csp6I GTAC 4 cut(s) 246, 536, 634, 772
CviAII CATG 6 cut(s) 35, 502, 550, 571, 595, 675
CviJI RGCY 7 cut(s) 13, 155, 173, 180, 258, 625, 727
CviKI_1 RGCY 7 cut(s) 13, 155, 173, 180, 258, 625, 727
CviQI GTAC 4 cut(s) 246, 536, 634, 772
DdeI CTNAG 5 cut(s) 156, 213, 621, 651, 713
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DraIII CACNNNGTG 1 cut(s) 416
DriI GACNNNNNGTC 1 cut(s) 482
Eam1105I GACNNNNNGTC 1 cut(s) 482
Eco47I GGWCC 2 cut(s) 38, 387
Eco72I CACGTG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 697
EcoRII CCWGG 3 cut(s) 8, 13, 383
FaeI CATG 6 cut(s) 38, 505, 553, 574, 598, 678
FatI CATG 6 cut(s) 34, 501, 549, 570, 594, 674
Fnu4HI GCNGC 1 cut(s) 758
Fsp4HI GCNGC 1 cut(s) 758
FspBI CTAG 4 cut(s) 170, 513, 543, 626
GluI GCNGC 1 cut(s) 758
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 799
Hin1II CATG 6 cut(s) 38, 505, 553, 574, 598, 678
HinfI GANTC 6 cut(s) 50, 118, 215, 380, 427, 709
HpaII CCGG 1 cut(s) 799
HphI GGTGA 3 cut(s) 19, 428, 859
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 5 cut(s) 113, 212, 267, 344, 838
Hpy8I GTNNAC 1 cut(s) 309
HpyAV CCTTC 2 cut(s) 34, 445
HpyCH4III ACNGT 2 cut(s) 151, 498
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 1 cut(s) 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 5 cut(s) 156, 213, 621, 651, 713
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 6 cut(s) 38, 505, 553, 574, 598, 678
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 1 cut(s) 744
LweI GCATC 3 cut(s) 61, 124, 555
MaeI CTAG 4 cut(s) 170, 513, 543, 626
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 3 cut(s) 106, 277, 565
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 6 cut(s) 59, 143, 200, 530, 718, 744
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 1 cut(s) 454
MluCI AATT 5 cut(s) 240, 251, 262, 697, 826
MlyI GAGTC 3 cut(s) 224, 389, 421
MmeI TCCRAC 2 cut(s) 170, 555
MnlI CCTC 5 cut(s) 151, 475, 646, 679, 682
MseI TTAA 2 cut(s) 657, 768
MslI CAYNNNNRTG 2 cut(s) 593, 782
MspI CCGG 1 cut(s) 799
MspR9I CCNGG 4 cut(s) 10, 15, 385, 800
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 3 cut(s) 10, 15, 385
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 800
NdeII GATC 1 cut(s) 454
NlaIII CATG 6 cut(s) 38, 505, 553, 574, 598, 678
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 106, 565
NspI RCATGY 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 267
PfeI GAWTC 3 cut(s) 50, 118, 709
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 1 cut(s) 759
PleI GAGTC 3 cut(s) 223, 388, 421
PmaCI CACGTG 1 cut(s) 312
PmlI CACGTG 1 cut(s) 312
PpsI GAGTC 3 cut(s) 223, 388, 421
Ppu21I YACGTR 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 8, 13, 383
PspCI CACGTG 1 cut(s) 312
PspGI CCWGG 3 cut(s) 8, 13, 383
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 2 cut(s) 38, 387
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 4 cut(s) 247, 537, 635, 773
RsaNI GTAC 4 cut(s) 246, 536, 634, 772
RseI CAYNNNNRTG 2 cut(s) 593, 782
SaqAI TTAA 2 cut(s) 657, 768
SatI GCNGC 1 cut(s) 758
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 2 cut(s) 38, 387
SchI GAGTC 3 cut(s) 224, 389, 421
ScrFI CCNGG 4 cut(s) 10, 15, 385, 800
SfaNI GCATC 3 cut(s) 61, 124, 555
Sfr274I CTCGAG 1 cut(s) 267
SinI GGWCC 2 cut(s) 38, 387
SlaI CTCGAG 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 593, 782
SmlI CTYRAG 3 cut(s) 113, 267, 479
SmoI CTYRAG 3 cut(s) 113, 267, 479
Sse9I AATT 5 cut(s) 240, 251, 262, 697, 826
SsiI CCGC 1 cut(s) 137
SspMI CTAG 4 cut(s) 170, 513, 543, 626
StyD4I CCNGG 4 cut(s) 8, 13, 383, 798
TaaI ACNGT 2 cut(s) 151, 498
TaiI ACGT 1 cut(s) 314
TaqI TCGA 3 cut(s) 100, 268, 604
TasI AATT 5 cut(s) 240, 251, 262, 697, 826
TatI WGTACW 3 cut(s) 535, 633, 771
TfiI GAWTC 3 cut(s) 50, 118, 709
Tru1I TTAA 2 cut(s) 657, 768
Tru9I TTAA 2 cut(s) 657, 768
TscAI CASTG 1 cut(s) 784
TseFI GTSAC 2 cut(s) 106, 565
TseI GCWGC 1 cut(s) 757
Tsp45I GTSAC 2 cut(s) 106, 565
TspDTI ATGAA 3 cut(s) 144, 374, 811
TspRI CASTG 1 cut(s) 784
VpaK11BI GGWCC 2 cut(s) 38, 387
XapI RAATTY 1 cut(s) 697
XceI RCATGY 1 cut(s) 598
XhoI CTCGAG 1 cut(s) 267
XspI CTAG 4 cut(s) 170, 513, 543, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.