Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016464

Physical Location & Seq

Genomic Coordinates Reverse (-)

2718478 .. 2720479

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026389

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTATTTTTGGGCGTAGACCATCCTCGAGGCTTTGGTGATTCGAGTTTGGCTTTGGTGGAGTGGCGGATTTGTCGTTGCGTTCTTCTGGATCTCCGCTTTCTTTGTTTGGCTAATTCTGCACTCTTAGGTGATAAGCAGACTCTTATATCCTTGTCAGACAAGAAGGATCTTGCTTTCTTATGGAATGGACTTGAGGTCTTGCACCCACAGTCCATGAGACTGACTAGGGAAGATGATATTCCTGCTGTACTAACTAGCATCATGTTGAAAAGGAATGTGACCATGTTGGATATTGTTAGCACTCACATGCTTGGTCGATATGGTTTTCTTGCTGAGCTAGATAAGTACAAATGCTATGTTGCTGAGGTTAATGCTATAAAGGTGTCATGCTATAAAGAGGAGGTTTTGAATTCAAATAAGAATCTCAGCAAAGAAAAGCTACCCAGAAATGTGCCAAATGTTTCTTCGCTGCTGTTCTTTAAGTACAACACTGCTATGGAGATGTTTTACCGGGTTTTGATGGATGCCAACTTCATCAATTTCTCTATCCAGAATAAGGTGAGTGGTTGGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Fcf1

Protein Analysis

193

Amino Acids

21.98

Weight (kDa)

8.5

Isoelectric Point (pI)

22.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016464)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000919 RLG00000001194 RLG00000009585 RLG00000012275 RLG00000015005 RLG00000015233 RLG00000020579 RLG00000021013 RLG00000024378 RLG00000026389 RLG00000033061 RLG00000034808 RLG00000036761
rosa_samantha	Rh2CG476000 Rh5DG197200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	67, 97
AclWI	GGATC	2 cut(s)	99, 177
AcsI	RAATTY	1 cut(s)	412
AfaI	GTAC	3 cut(s)	252, 350, 488
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	3 cut(s)	271, 412, 417
AhdI	GACNNNNNGTC	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AluBI	AGCT	2 cut(s)	340, 442
AluI	AGCT	2 cut(s)	340, 442
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	99, 177
Ama87I	CYCGRG	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	3 cut(s)	50, 143, 574
AvaI	CYCGRG	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	2 cut(s)	30, 517
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	3 cut(s)	228, 258, 341
BisI	GCNGC	1 cut(s)	473
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	474
Bme1390I	CCNGG	1 cut(s)	515
BmeRI	GACNNNNNGTC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	270, 517
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
BseGI	GGATG	2 cut(s)	22, 532
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	327, 357, 442
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	459
BsgI	GTGCAG	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	91, 169
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	2 cut(s)	67, 97
BspCNI	CTCAG	3 cut(s)	328, 358, 441
BspPI	GGATC	2 cut(s)	99, 177
BssMI	GATC	2 cut(s)	91, 169
Bst4CI	ACNGT	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	127, 336, 366, 428
BstF5I	GGATG	2 cut(s)	22, 532
BstKTI	GATC	2 cut(s)	94, 172
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	91, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	459
BstX2I	RGATCY	2 cut(s)	91, 169
BstYI	RGATCY	2 cut(s)	91, 169
BtsCI	GGATG	2 cut(s)	22, 532
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Csp6I	GTAC	3 cut(s)	251, 349, 487
CviAII	CATG	5 cut(s)	217, 265, 286, 310, 390
CviJI	RGCY	5 cut(s)	33, 53, 113, 340, 442
CviKI_1	RGCY	5 cut(s)	33, 53, 113, 340, 442
CviQI	GTAC	3 cut(s)	251, 349, 487
DdeI	CTNAG	4 cut(s)	127, 336, 366, 428
DpnI	GATC	2 cut(s)	93, 171
DpnII	GATC	2 cut(s)	91, 169
DriI	GACNNNNNGTC	1 cut(s)	197
Eam1105I	GACNNNNNGTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	412
FaeI	CATG	5 cut(s)	220, 268, 289, 313, 393
FatI	CATG	5 cut(s)	216, 264, 285, 309, 389
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	2 cut(s)	9, 539
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	3 cut(s)	228, 258, 341
GluI	GCNGC	1 cut(s)	473
HapII	CCGG	1 cut(s)	514
Hin1II	CATG	5 cut(s)	220, 268, 289, 313, 393
HinfI	GANTC	3 cut(s)	41, 142, 424
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	3 cut(s)	50, 143, 574
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	89, 553
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	122, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	4 cut(s)	127, 336, 366, 428
Hsp92II	CATG	5 cut(s)	220, 268, 289, 313, 393
Kzo9I	GATC	2 cut(s)	91, 169
LpnPI	CCDG	5 cut(s)	74, 258, 460, 527, 566
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	2 cut(s)	270, 517
MaeI	CTAG	3 cut(s)	228, 258, 341
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	93, 171
MboI	GATC	2 cut(s)	91, 169
MboII	GAAGA	3 cut(s)	77, 245, 459
MflI	RGATCY	2 cut(s)	91, 169
MluCI	AATT	3 cut(s)	115, 412, 541
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	6 cut(s)	23, 36, 190, 361, 394, 397
MseI	TTAA	2 cut(s)	372, 483
MslI	CAYNNNNRTG	2 cut(s)	308, 497
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	515
NdeII	GATC	2 cut(s)	91, 169
NlaIII	CATG	5 cut(s)	220, 268, 289, 313, 393
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	313
PaeR7I	CTCGAG	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	41, 424
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PspXI	VCTCGAGB	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	91, 169
RsaI	GTAC	3 cut(s)	252, 350, 488
RsaNI	GTAC	3 cut(s)	251, 349, 487
RseI	CAYNNNNRTG	2 cut(s)	308, 497
SaqAI	TTAA	2 cut(s)	372, 483
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	2 cut(s)	91, 169
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	515
SetI	ASST	8 cut(s)	133, 201, 342, 372, 387, 408, 444, 564
SfaNI	GCATC	2 cut(s)	270, 517
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	308, 497
SmlI	CTYRAG	2 cut(s)	27, 194
SmoI	CTYRAG	2 cut(s)	27, 194
Sse9I	AATT	3 cut(s)	115, 412, 541
SsiI	CCGC	2 cut(s)	67, 97
SspMI	CTAG	3 cut(s)	228, 258, 341
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	28, 44, 319
TasI	AATT	3 cut(s)	115, 412, 541
TatI	WGTACW	3 cut(s)	250, 348, 486
TfiI	GAWTC	2 cut(s)	41, 424
Tru1I	TTAA	2 cut(s)	372, 483
Tru9I	TTAA	2 cut(s)	372, 483
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	499
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	3 cut(s)	228, 258, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.