RLG00000021013

rRNA-processing protein FCF1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016464
Physical Location & Seq
Forward (+)
71080388 .. 71084789
4402 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021013

Sequence Viewer

Length: 828 bp
ATGTTATTTTTGGGCGTAGACCATCCTCGAGGCTTTGGTGATTCGAGTTTGGCTTTGGTGGAGTGGCGGATTTGTCGTTGCGTTCTTCTGGATCTCCGCTTTCTTTGTTTGGCTAATTCTGCACTCTTAGGTGATAAGCAGACTCTTATATCCTTGTCAGACAAGAAGGATCTTGCTTTCTTATGGAATGGACTTGAGGTCTTGCGCCCACAGTCCATGAGACTGACTAGGGAAGATGATATTCCTGCTGTACTAACTAGCATCATGTTGAAAAGGAATGTGACCATGTTGGATATTGTTAGCACTCACATGCTTGGTCGATATGGTTTTCTTGCTGAGCTAGATAAGTACAAATGCTATGTTGCTGAGGTTAATGCTATAAAGGTGTCATGCTATAAAGAGGAGGTTTTGAATTCAAAGAAGAATCTCAGCAAAGAAAAGCTACCCAGAAATGTGCCAAATGTTTCTTCGCTGCTGTTCTTTAAGTACAACACTGCTATGGAGATGTTTTACCGGGTTTTGATGGATACCAACTTCATCAATTTCTCTATCCAGAATAAGACTGTGAACCACCCGAAATTTGGAGAGGAAAAAGACGAAGAAGGTTGGCGGTGTCCAAAATCATCGATGAAGATGAGTATGCAACCTAAAAATTGCAGGAGGCCAGAGAAGAAGACAGAGGTAGTAGTAGCAGACGAAGGAATTGAGGTTGATATGAAGAGAAGGAAAAGGGTAAGGCAAGAAATCAAGAATAAAGATGTTGATCATGGACTAGACATGCTGATTGAGCAATATAAATCCAATGAAGTATATATTCAAAGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Fcf1

Protein Analysis

276

Amino Acids

31.93

Weight (kDa)

8.94

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 27
AccI GTMKAC 1 cut(s) 18
AciI CCGC 3 cut(s) 67, 97, 610
AclWI GGATC 2 cut(s) 99, 177
AcsI RAATTY 2 cut(s) 412, 578
AfaI GTAC 3 cut(s) 252, 350, 488
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 4 cut(s) 271, 412, 417, 818
AhdI GACNNNNNGTC 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AluBI AGCT 2 cut(s) 340, 442
AluI AGCT 2 cut(s) 340, 442
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 2 cut(s) 99, 177
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 1 cut(s) 662
ApeKI GCWGC 1 cut(s) 472
ApoI RAATTY 2 cut(s) 412, 578
AspLEI GCGC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 515
AsuHPI GGTGA 2 cut(s) 50, 143
AvaI CYCGRG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 680
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 459
BccI CCATC 2 cut(s) 30, 517
BciVI GTATCC 1 cut(s) 520
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 1 cut(s) 515
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 4 cut(s) 228, 258, 341, 773
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 1 cut(s) 473
BlpI GCTNAGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 474
Bme1390I CCNGG 1 cut(s) 515
BmeRI GACNNNNNGTC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 515
BmsI GCATC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 515
Bsa29I ATCGAT 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 762
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse8I GATNNNNATC 1 cut(s) 762
BseCI ATCGAT 1 cut(s) 626
BseGI GGATG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 3 cut(s) 327, 357, 442
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 1 cut(s) 459
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 664
BshVI ATCGAT 1 cut(s) 626
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 1 cut(s) 664
BsoBI CYCGRG 1 cut(s) 27
Bsp143I GATC 3 cut(s) 91, 169, 763
Bsp1720I GCTNAGC 1 cut(s) 336
BspACI CCGC 3 cut(s) 67, 97, 610
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 3 cut(s) 328, 358, 441
BspDI ATCGAT 1 cut(s) 626
BspPI GGATC 2 cut(s) 99, 177
BssMI GATC 3 cut(s) 91, 169, 763
Bst4CI ACNGT 2 cut(s) 213, 565
Bst6I CTCTTC 1 cut(s) 713
BstDEI CTNAG 4 cut(s) 127, 336, 366, 428
BstF5I GGATG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 3 cut(s) 94, 172, 766
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 3 cut(s) 91, 169, 763
BstMWI GCNNNNNNNGC 2 cut(s) 119, 787
BstNSI RCATGY 2 cut(s) 313, 781
BstSCI CCNGG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 680
BstX2I RGATCY 2 cut(s) 91, 169
BstYI RGATCY 2 cut(s) 91, 169
Bsu15I ATCGAT 1 cut(s) 626
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 1 cut(s) 664
BsuTUI ATCGAT 1 cut(s) 626
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
CfoI GCGC 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 626
Csp6I GTAC 3 cut(s) 251, 349, 487
CviAII CATG 7 cut(s) 217, 265, 286, 310, 390, 767, 778
CviJI RGCY 6 cut(s) 33, 53, 113, 340, 442, 664
CviKI_1 RGCY 6 cut(s) 33, 53, 113, 340, 442, 664
CviQI GTAC 3 cut(s) 251, 349, 487
DdeI CTNAG 4 cut(s) 127, 336, 366, 428
DpnI GATC 3 cut(s) 93, 171, 765
DpnII GATC 3 cut(s) 91, 169, 763
DriI GACNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 713
Eam1105I GACNNNNNGTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 713
EciI GGCGGA 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 412
FaeI CATG 7 cut(s) 220, 268, 289, 313, 393, 770, 781
FatI CATG 7 cut(s) 216, 264, 285, 309, 389, 766, 777
FbaI TGATCA 1 cut(s) 763
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 473
FokI GGATG 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 473
FspBI CTAG 4 cut(s) 228, 258, 341, 773
GlaI GCGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 473
HaeIII GGCC 1 cut(s) 664
HapII CCGG 1 cut(s) 514
HhaI GCGC 1 cut(s) 207
Hin1II CATG 7 cut(s) 220, 268, 289, 313, 393, 770, 781
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 3 cut(s) 41, 142, 424
HpaII CCGG 1 cut(s) 514
HphI GGTGA 2 cut(s) 50, 143
Hpy166II GTNNAC 2 cut(s) 19, 568
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 3 cut(s) 89, 553, 748
Hpy8I GTNNAC 2 cut(s) 19, 568
HpyAV CCTTC 4 cut(s) 160, 596, 692, 717
HpyCH4III ACNGT 2 cut(s) 213, 565
HpyCH4V TGCA 3 cut(s) 122, 643, 657
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 787
HpyF3I CTNAG 4 cut(s) 127, 336, 366, 428
Hsp92II CATG 7 cut(s) 220, 268, 289, 313, 393, 770, 781
HspAI GCGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 3 cut(s) 91, 169, 763
LpnPI CCDG 7 cut(s) 74, 258, 460, 527, 566, 643, 678
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 1 cut(s) 270
MaeI CTAG 4 cut(s) 228, 258, 341, 773
MaeIII GTNAC 1 cut(s) 280
MalI GATC 3 cut(s) 93, 171, 765
MboI GATC 3 cut(s) 91, 169, 763
MboII GAAGA 9 cut(s) 77, 245, 433, 459, 611, 643, 682, 685, 730
MflI RGATCY 2 cut(s) 91, 169
MluCI AATT 6 cut(s) 115, 412, 541, 578, 652, 702
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 270
MseI TTAA 2 cut(s) 372, 483
MslI CAYNNNNRTG 2 cut(s) 308, 497
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 515
MwoI GCNNNNNNNGC 2 cut(s) 119, 787
NciI CCSGG 1 cut(s) 515
NdeII GATC 3 cut(s) 91, 169, 763
NlaIII CATG 7 cut(s) 220, 268, 289, 313, 393, 770, 781
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 2 cut(s) 313, 781
PaeR7I CTCGAG 1 cut(s) 27
PfeI GAWTC 2 cut(s) 41, 424
PkrI GCNGC 1 cut(s) 474
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PspXI VCTCGAGB 1 cut(s) 27
PsuI RGATCY 2 cut(s) 91, 169
RsaI GTAC 3 cut(s) 252, 350, 488
RsaNI GTAC 3 cut(s) 251, 349, 487
RseI CAYNNNNRTG 2 cut(s) 308, 497
SaqAI TTAA 2 cut(s) 372, 483
SatI GCNGC 1 cut(s) 473
Sau3AI GATC 3 cut(s) 91, 169, 763
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 515
SfaNI GCATC 1 cut(s) 270
Sfr274I CTCGAG 1 cut(s) 27
SlaI CTCGAG 1 cut(s) 27
SmiMI CAYNNNNRTG 2 cut(s) 308, 497
SmlI CTYRAG 2 cut(s) 27, 194
SmoI CTYRAG 2 cut(s) 27, 194
Sse9I AATT 6 cut(s) 115, 412, 541, 578, 652, 702
SsiI CCGC 3 cut(s) 67, 97, 610
SspMI CTAG 4 cut(s) 228, 258, 341, 773
StyD4I CCNGG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 213, 565
TaqI TCGA 4 cut(s) 28, 44, 319, 626
TasI AATT 6 cut(s) 115, 412, 541, 578, 652, 702
TatI WGTACW 3 cut(s) 250, 348, 486
TfiI GAWTC 2 cut(s) 41, 424
Tru1I TTAA 2 cut(s) 372, 483
Tru9I TTAA 2 cut(s) 372, 483
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 472
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 4 cut(s) 526, 644, 731, 819
TspRI CASTG 1 cut(s) 499
XapI RAATTY 2 cut(s) 412, 578
XceI RCATGY 2 cut(s) 313, 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XhoI CTCGAG 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 4 cut(s) 228, 258, 341, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.