Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016464

Physical Location & Seq

Genomic Coordinates Reverse (-)

21979721 .. 21980293

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG197200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAACCCAATTTAGAAAGGCCTAGTGTCACCTTTACCACTCATGGTCCTTTCGAAGATTCTATTGGGTTCGGGTTTGATGCCATGACGAATGATTACAAGGTTGTTCGACTTGTCACTCTTGAGGAAGATGCGGCAAATCCAATTGTAGCTGAGGTTTATTCACTAGCCACCGGATCATGGAACAGTCTTGGTTCTGTTGCACCACCATGCCGAGTACATGGAGTAAGACGCCAGTGTTTTTTCAACGGAGCTATTCATTGGGCTGTAGAACCTGGGGGAACTGCTGGTGCTTATTTCTATTTCATATTTGATCTCGGCAGTGAGTTATTTCGTGAGATAATGATCCTTTGGGGTACCGAAATGCACTTAGAATCGCGAGTGTCTGTCTCGGGAGATGAGAAATCCCTTGCTTTGTTCACGAGGTACAGAGATAAGAATGGTGTTTGTTCTCTTGATATCTGGGTAATGAAAGAGTATTGCAGGCAGGACTCGTGGACTAAACTGATAACTTTAGGTCCAAATTTAACTGTCTGTAGTGTAGACGCCATTGACAAGCCCTTACCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

190

Amino Acids

21.25

Weight (kDa)

5.08

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	19 - 179	2.2e-16	F-box associated beta propeller domain
FBA_3	PF08268	23 - 174	1.3e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016464)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000919 RLG00000001194 RLG00000009585 RLG00000012275 RLG00000015005 RLG00000015233 RLG00000020579 RLG00000021013 RLG00000024378 RLG00000026389 RLG00000033061 RLG00000034808 RLG00000036761
rosa_samantha	Rh2CG476000 Rh5DG197200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	1 cut(s)	379
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	2 cut(s)	184, 340
AcsI	RAATTY	1 cut(s)	523
AcyI	GRCGYC	2 cut(s)	232, 546
AfaI	GTAC	3 cut(s)	219, 358, 428
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	2 cut(s)	152, 254
AluI	AGCT	2 cut(s)	152, 254
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	184, 340
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	523
Asp718I	GGTACC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	47, 518
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	2 cut(s)	47, 518
BanI	GGYRCC	1 cut(s)	356
BauI	CACGAG	2 cut(s)	421, 493
BbvCI	CCTCAGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	24, 167
BfmI	CTRYAG	2 cut(s)	267, 535
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	47, 518
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	47, 518
BmiI	GGNNCC	2 cut(s)	6, 358
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	70, 121
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	344
BsaHI	GRCGYC	2 cut(s)	232, 546
BsaJI	CCNNGG	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	275
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	379
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	176, 313, 345
Bsp68I	TCGCGA	1 cut(s)	379
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	6, 358
BspPI	GGATC	2 cut(s)	184, 340
BspT104I	TTCGAA	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	3 cut(s)	176, 313, 345
BssNI	GRCGYC	2 cut(s)	232, 546
BssSI	CACGAG	2 cut(s)	421, 493
Bst2BI	CACGAG	2 cut(s)	421, 493
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	188, 532
BstACI	GRCGYC	2 cut(s)	232, 546
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	153, 370
BstFNI	CGCG	1 cut(s)	379
BstKTI	GATC	3 cut(s)	179, 316, 348
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	3 cut(s)	176, 313, 345
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	2 cut(s)	267, 535
BstUI	CGCG	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	242, 328
BtuMI	TCGCGA	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	47, 518
CseI	GACGC	2 cut(s)	240, 554
Csp6I	GTAC	3 cut(s)	218, 357, 427
CviAII	CATG	5 cut(s)	44, 85, 180, 210, 221
CviJI	RGCY	6 cut(s)	22, 152, 170, 254, 266, 559
CviKI_1	RGCY	6 cut(s)	22, 152, 170, 254, 266, 559
CviQI	GTAC	3 cut(s)	218, 357, 427
DdeI	CTNAG	2 cut(s)	153, 370
DpnI	GATC	3 cut(s)	178, 315, 347
DpnII	GATC	3 cut(s)	176, 313, 345
Eco147I	AGGCCT	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	47, 518
Eco88I	CYCGRG	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	460
FaeI	CATG	5 cut(s)	47, 88, 183, 213, 224
FaiI	YATR	6 cut(s)	45, 86, 181, 211, 222, 308
FatI	CATG	5 cut(s)	43, 84, 179, 209, 220
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	24, 167
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	2 cut(s)	240, 554
Hin1I	GRCGYC	2 cut(s)	232, 546
Hin1II	CATG	5 cut(s)	47, 88, 183, 213, 224
HinfI	GANTC	3 cut(s)	59, 374, 491
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	420, 498, 544
Hpy188III	TCNNGA	6 cut(s)	122, 335, 378, 393, 421, 455
Hpy8I	GTNNAC	3 cut(s)	420, 498, 544
HpyCH4III	ACNGT	2 cut(s)	188, 532
HpyCH4V	TGCA	3 cut(s)	203, 367, 483
HpyF3I	CTNAG	2 cut(s)	153, 370
Hsp92I	GRCGYC	2 cut(s)	232, 546
Hsp92II	CATG	5 cut(s)	47, 88, 183, 213, 224
KpnI	GGTACC	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	176, 313, 345
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	8 cut(s)	187, 248, 261, 273, 288, 448, 469, 473
LweI	GCATC	2 cut(s)	70, 121
MaeI	CTAG	2 cut(s)	24, 167
MaeIII	GTNAC	2 cut(s)	28, 115
MalI	GATC	3 cut(s)	178, 315, 347
MboI	GATC	3 cut(s)	176, 313, 345
MboII	GAAGA	2 cut(s)	68, 140
MfeI	CAATTG	1 cut(s)	144
MluCI	AATT	3 cut(s)	10, 144, 523
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	3 cut(s)	118, 148, 417
MseI	TTAA	1 cut(s)	527
MslI	CAYNNNNRTG	1 cut(s)	208
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	379
NdeII	GATC	3 cut(s)	176, 313, 345
NlaIII	CATG	5 cut(s)	47, 88, 183, 213, 224
NlaIV	GGNNCC	2 cut(s)	6, 358
NmeAIII	GCCGAG	2 cut(s)	239, 297
NmuCI	GTSAC	2 cut(s)	28, 115
NruI	TCGCGA	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	59, 374
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	6, 358
PspPI	GGNCC	2 cut(s)	47, 518
RruI	TCGCGA	1 cut(s)	379
RsaI	GTAC	3 cut(s)	219, 358, 428
RsaNI	GTAC	3 cut(s)	218, 357, 427
RseI	CAYNNNNRTG	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	527
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	176, 313, 345
Sau96I	GGNCC	2 cut(s)	47, 518
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	8 cut(s)	35, 105, 154, 159, 256, 277, 428, 520
SfaNI	GCATC	2 cut(s)	70, 121
SfcI	CTRYAG	2 cut(s)	267, 535
SfuI	TTCGAA	1 cut(s)	54
SinI	GGWCC	2 cut(s)	47, 518
SmiMI	CAYNNNNRTG	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	3 cut(s)	10, 144, 523
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	2 cut(s)	24, 167
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	188, 532
TaqI	TCGA	2 cut(s)	54, 109
TasI	AATT	3 cut(s)	10, 144, 523
TatI	WGTACW	1 cut(s)	217
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	59, 374
Tru1I	TTAA	1 cut(s)	527
Tru9I	TTAA	1 cut(s)	527
TscAI	CASTG	2 cut(s)	242, 328
TseFI	GTSAC	2 cut(s)	28, 115
Tsp45I	GTSAC	2 cut(s)	28, 115
TspDTI	ATGAA	3 cut(s)	248, 295, 485
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	242, 328
VpaK11BI	GGWCC	2 cut(s)	47, 518
XapI	RAATTY	1 cut(s)	523
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	2 cut(s)	24, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.