Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Reverse (-)

17699470 .. 17699975

Gene Structure 506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTAACAGTAATGGGCAGCCTCCGCGACGCCACCGCATCGGCTACGCCTTCCCGTCGAAGAAAGAGCAGACCTTCATCCAACCGTCGCTGATCGCCCACGCCGGACAACACGACATTGATCTGGTCCCCGTCGATGCCGCCAAGGCCTTGACCCAGCAGGGCCCCTTCGACTGCATCATCTACAAGCTCTATGACGACGACTGGAATCACACTGTCAACTACAACAACCAAACCGAAGTTCCCTTTTCGGTTTCTGTTCCAGTTCCGGCGAATTTTTGCATTTTCAAAACCGAATCCAGCCCTAATACTGGCTGGTGTTGTTCTAATCGATCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

114

Amino Acids

12.67

Weight (kDa)

6.38

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	13 - 74	4.1e-20	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	28
AciI	CCGC	3 cut(s)	26, 37, 141
AcsI	RAATTY	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
AoxI	GGCC	2 cut(s)	147, 163
ApaI	GGGCCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	127, 163, 164
AvaII	GGWCC	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	20, 141
BlsI	GCNGC	2 cut(s)	21, 142
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	127, 163, 164
BmiI	GGNNCC	3 cut(s)	129, 165, 166
BmsI	GCATC	3 cut(s)	48, 127, 186
Bsa29I	ATCGAT	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	209, 263, 316
BseCI	ATCGAT	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	209, 263, 316
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	149, 165
BshVI	ATCGAT	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	105, 269
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	149, 165
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	93, 121, 332
BspACI	CCGC	3 cut(s)	26, 37, 141
BspANI	GGCC	2 cut(s)	149, 165
BspDI	ATCGAT	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	129, 165, 166
BsrI	ACTGG	3 cut(s)	209, 263, 316
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	93, 121, 332
BssNI	GRCGYC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	11, 87, 217
BstACI	GRCGYC	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	96, 124, 335
BstMBI	GATC	3 cut(s)	93, 121, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 146
BstSLI	GKGCMC	1 cut(s)	167
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	149, 165
BsuTUI	ATCGAT	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	213
Cfr13I	GGNCC	3 cut(s)	127, 163, 164
ClaI	ATCGAT	1 cut(s)	331
CseI	GACGC	1 cut(s)	39
CviJI	RGCY	7 cut(s)	22, 45, 149, 165, 190, 303, 315
CviKI_1	RGCY	7 cut(s)	22, 45, 149, 165, 190, 303, 315
DpnI	GATC	3 cut(s)	95, 123, 334
DpnII	GATC	3 cut(s)	93, 121, 332
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	163, 164
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	144
FaiI	YATR	1 cut(s)	195
FaqI	GGGAC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	20, 141
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	20, 141
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	2 cut(s)	20, 141
GsaI	CCCAGC	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	149, 165
HapII	CCGG	2 cut(s)	105, 269
HgaI	GACGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	208, 296
HpaII	CCGG	2 cut(s)	105, 269
Hpy166II	GTNNAC	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	5 cut(s)	33, 61, 91, 137, 203
HpyAV	CCTTC	3 cut(s)	61, 85, 178
HpyCH4III	ACNGT	3 cut(s)	11, 87, 217
HpyCH4V	TGCA	2 cut(s)	177, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 146
Hsp92I	GRCGYC	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	93, 121, 332
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	3 cut(s)	48, 127, 186
MaeI	CTAG	1 cut(s)	340
MalI	GATC	3 cut(s)	95, 123, 334
MboI	GATC	3 cut(s)	93, 121, 332
MboII	GAAGA	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	1 cut(s)	33
MspI	CCGG	2 cut(s)	105, 269
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	25, 146
NdeII	GATC	3 cut(s)	93, 121, 332
NlaIV	GGNNCC	3 cut(s)	129, 165, 166
PceI	AGGCCT	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	208, 296
PkrI	GCNGC	2 cut(s)	21, 142
PspFI	CCCAGC	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	129, 165, 166
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	127, 163, 164
SatI	GCNGC	2 cut(s)	20, 141
Sau3AI	GATC	3 cut(s)	93, 121, 332
Sau96I	GGNCC	3 cut(s)	127, 163, 164
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	3 cut(s)	77, 192, 341
SfaNI	GCATC	3 cut(s)	48, 127, 186
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	274
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	3 cut(s)	26, 37, 141
SspMI	CTAG	1 cut(s)	340
StuI	AGGCCT	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	11, 87, 217
TaqI	TCGA	4 cut(s)	59, 135, 171, 331
TasI	AATT	1 cut(s)	274
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	208, 296
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	274
XspI	CTAG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.