Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011127.1

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1302

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011127.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

cctccgcgacgccaccgcataggctacgccttccctccgaataaagagcagaccttcatccaaccggcgcagatcgcccacgccggacaacacgtcatcgatctggtccccgtcgatgccgccaaggtcttgacccagcagagtcccttcgactgcatcatccacaagctctacgatgacgactggaatcaacaattgaaggaatactcgtctctctatccccgcaccgtcatcctcgacccgcacgagtccatcgcccgcctccacaaccgggtctcaatgctagacgtcatcaaagccgccttcaaagccccgcgagtagagaatgtcgggatccccaagcaagtctccagattaattccggcactatcaactacaacaaccgaaccgaagttccctttccggtttcggttctggttcagggaaatttttgcattttcagaaccgaatccagccctaggtatgagtatggaaaacatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

160

Amino Acids

18.42

Weight (kDa)

9.16

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccII	CGCG	2 cut(s)	7, 316
AciI	CCGC	8 cut(s)	5, 16, 120, 223, 242, 259, 300, 314
AclWI	GGATC	2 cut(s)	328, 341
AcsI	RAATTY	1 cut(s)	426
AcyI	GRCGYC	2 cut(s)	10, 288
AfiI	CCNNNNNNNGG	2 cut(s)	271, 458
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	199, 307
AhdI	GACNNNNNGTC	1 cut(s)	92
AjiI	CACGTC	1 cut(s)	94
AloI	GAACNNNNNNTCC	2 cut(s)	378, 410
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	3 cut(s)	216, 280, 352
AlwI	GGATC	2 cut(s)	328, 341
ApoI	RAATTY	1 cut(s)	426
AseI	ATTAAT	1 cut(s)	356
AspA2I	CCTAGG	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	106
AvrII	CCTAGG	1 cut(s)	457
BamHI	GGATCC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	245
BccI	CCATC	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	3 cut(s)	216, 280, 352
BfaI	CTAG	3 cut(s)	284, 458, 481
BisI	GCNGC	2 cut(s)	120, 300
BlnI	CCTAGG	1 cut(s)	457
BlsI	GCNGC	2 cut(s)	121, 301
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	106
BmeRI	GACNNNNNGTC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	108, 335
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	106, 165
BpmI	CTGGAG	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	272
Bsa29I	ATCGAT	1 cut(s)	99
BsaHI	GRCGYC	2 cut(s)	10, 288
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	123, 457
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 458
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	123, 457
BseGI	GGATG	3 cut(s)	57, 159, 231
BseLI	CCNNNNNNNGG	2 cut(s)	271, 458
BseNI	ACTGG	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	135
Bsh1236I	CGCG	2 cut(s)	7, 316
BshVI	ATCGAT	1 cut(s)	99
BsiSI	CCGG	5 cut(s)	65, 84, 271, 362, 403
BslFI	GGGAC	2 cut(s)	92, 129
BslI	CCNNNNNNNGG	2 cut(s)	271, 458
BsmAI	GTCTC	3 cut(s)	216, 280, 352
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	2 cut(s)	92, 129
Bso31I	GGTCTC	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	72, 100, 333
BspACI	CCGC	8 cut(s)	5, 16, 120, 223, 242, 259, 300, 314
BspDI	ATCGAT	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	7, 316
BspLI	GGNNCC	2 cut(s)	108, 335
BspPI	GGATC	2 cut(s)	328, 341
BspTNI	GGTCTC	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	123, 457
BssMI	GATC	3 cut(s)	72, 100, 333
BssNI	GRCGYC	2 cut(s)	10, 288
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	2 cut(s)	123, 457
Bst2BI	CACGAG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	229
BstACI	GRCGYC	2 cut(s)	10, 288
BstC8I	GCNNGC	1 cut(s)	259
BstF5I	GGATG	3 cut(s)	57, 159, 231
BstFNI	CGCG	2 cut(s)	7, 316
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	3 cut(s)	75, 103, 336
BstMAI	GTCTC	3 cut(s)	216, 280, 352
BstMBI	GATC	3 cut(s)	72, 100, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 308
BstSCI	CCNGG	1 cut(s)	270
BstUI	CGCG	2 cut(s)	7, 316
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	238
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	57, 159, 231
Cac8I	GCNNGC	1 cut(s)	259
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	99
CseI	GACGC	1 cut(s)	18
CviJI	RGCY	5 cut(s)	24, 169, 299, 311, 455
CviKI_1	RGCY	5 cut(s)	24, 169, 299, 311, 455
DpnI	GATC	3 cut(s)	74, 102, 335
DpnII	GATC	3 cut(s)	72, 100, 333
DriI	GACNNNNNGTC	1 cut(s)	92
Eam1105I	GACNNNNNGTC	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	123, 457
Eco31I	GGTCTC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	123, 457
ErhI	CCWWGG	2 cut(s)	123, 457
Esp3I	CGTCTC	1 cut(s)	216
FaiI	YATR	3 cut(s)	20, 464, 470
FaqI	GGGAC	2 cut(s)	92, 129
FauI	CCCGC	4 cut(s)	230, 249, 266, 321
Fnu4HI	GCNGC	2 cut(s)	120, 300
FokI	GGATG	3 cut(s)	44, 146, 218
Fsp4HI	GCNGC	2 cut(s)	120, 300
FspBI	CTAG	3 cut(s)	284, 458, 481
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	120, 300
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	334
HapII	CCGG	5 cut(s)	65, 84, 271, 362, 403
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	2 cut(s)	10, 288
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	4 cut(s)	142, 187, 248, 448
HpaII	CCGG	5 cut(s)	65, 84, 271, 362, 403
Hpy188I	TCNGA	2 cut(s)	39, 442
Hpy188III	TCNNGA	3 cut(s)	130, 331, 351
Hpy99I	CGWCG	2 cut(s)	12, 116
HpyAV	CCTTC	5 cut(s)	40, 64, 157, 193, 313
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	93, 288
HpyCH4V	TGCA	2 cut(s)	156, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 308
HpySE526I	ACGT	2 cut(s)	93, 288
Hsp92I	GRCGYC	2 cut(s)	10, 288
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	72, 100, 333
LweI	GCATC	2 cut(s)	106, 165
MaeI	CTAG	3 cut(s)	284, 458, 481
MaeII	ACGT	2 cut(s)	93, 288
MalI	GATC	3 cut(s)	74, 102, 335
MboI	GATC	3 cut(s)	72, 100, 333
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	1 cut(s)	333
MluCI	AATT	3 cut(s)	194, 357, 426
MlyI	GAGTC	2 cut(s)	151, 257
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	4 cut(s)	12, 45, 245, 272
MseI	TTAA	1 cut(s)	356
MspI	CCGG	5 cut(s)	65, 84, 271, 362, 403
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	194
MvnI	CGCG	2 cut(s)	7, 316
MwoI	GCNNNNNNNGC	2 cut(s)	74, 308
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	72, 100, 333
NlaIV	GGNNCC	2 cut(s)	108, 335
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	187, 448
PkrI	GCNGC	2 cut(s)	121, 301
PleI	GAGTC	2 cut(s)	150, 256
PpsI	GAGTC	2 cut(s)	150, 256
PshBI	ATTAAT	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	108, 335
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	120, 300
Sau3AI	GATC	3 cut(s)	72, 100, 333
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	2 cut(s)	151, 257
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	6 cut(s)	56, 96, 129, 171, 291, 463
SfaNI	GCATC	2 cut(s)	106, 165
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	3 cut(s)	194, 357, 426
SsiI	CCGC	8 cut(s)	5, 16, 120, 223, 242, 259, 300, 314
SspMI	CTAG	3 cut(s)	284, 458, 481
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	123, 457
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	2 cut(s)	96, 291
TaqI	TCGA	4 cut(s)	99, 114, 150, 237
TasI	AATT	3 cut(s)	194, 357, 426
TauI	GCSGC	2 cut(s)	122, 302
TfiI	GAWTC	2 cut(s)	187, 448
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	106
VspI	ATTAAT	1 cut(s)	356
XapI	RAATTY	1 cut(s)	426
XmaJI	CCTAGG	1 cut(s)	457
XspI	CTAG	3 cut(s)	284, 458, 481
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.