Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013671.1

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Reverse (-)

16380 .. 17266

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013671.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atgggcaccaaaaagttggatgaccagaaagaaaagactgttagaagatcgcagcctccgcgacgccaccgcatcggctacgccttcccgctgaagaaagagcagaccttcatccaaccgtcgctgatctcccacgccggacaacacggcatcgatctggtccccgtcgatgccgccaaggccttgacccagcagggccctttcgactgcatcatccacaagctctacgacgacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

79

Amino Acids

9.0

Weight (kDa)

9.21

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	61
AciI	CCGC	4 cut(s)	59, 70, 89, 174
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	64
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
AoxI	GGCC	2 cut(s)	180, 196
ApaI	GGGCCC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	160, 196, 197
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	2 cut(s)	8, 200
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	163
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	53, 174
BlsI	GCNGC	2 cut(s)	54, 175
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	3 cut(s)	160, 196, 197
BmiI	GGNNCC	3 cut(s)	7, 162, 198
BmsI	GCATC	4 cut(s)	81, 159, 160, 219
Bsa29I	ATCGAT	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	3 cut(s)	25, 111, 213
BseSI	GKGCMC	2 cut(s)	8, 200
BseXI	GCAGC	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	182, 198
BshNI	GGYRCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	182, 198
Bsp120I	GGGCCC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	8, 200
Bsp143I	GATC	3 cut(s)	47, 126, 154
BspACI	CCGC	4 cut(s)	59, 70, 89, 174
BspANI	GGCC	2 cut(s)	182, 198
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	7, 162, 198
BspT107I	GGYRCC	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	47, 126, 154
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	40, 120
BstACI	GRCGYC	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	25, 111, 213
BstFNI	CGCG	1 cut(s)	61
BstKTI	GATC	3 cut(s)	50, 129, 157
BstMBI	GATC	3 cut(s)	47, 126, 154
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 179
BstSLI	GKGCMC	2 cut(s)	8, 200
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	182, 198
BsuTUI	ATCGAT	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	25, 111, 213
Cfr13I	GGNCC	3 cut(s)	160, 196, 197
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	1 cut(s)	72
CviJI	RGCY	5 cut(s)	55, 78, 182, 198, 223
CviKI_1	RGCY	5 cut(s)	55, 78, 182, 198, 223
DpnI	GATC	3 cut(s)	49, 128, 156
DpnII	GATC	3 cut(s)	47, 126, 154
Eco130I	CCWWGG	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	113
EcoO109I	RGGNCCY	2 cut(s)	196, 197
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	177
FaqI	GGGAC	1 cut(s)	146
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	53, 174
FokI	GGATG	3 cut(s)	32, 98, 200
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	53, 174
GluI	GCNGC	2 cut(s)	53, 174
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	182, 198
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	138
Hpy99I	CGWCG	5 cut(s)	66, 124, 170, 233, 236
HpyAV	CCTTC	2 cut(s)	94, 118
HpyCH4III	ACNGT	2 cut(s)	40, 120
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 179
Hsp92I	GRCGYC	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	47, 126, 154
LpnPI	CCDG	5 cut(s)	38, 143, 151, 179, 203
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	4 cut(s)	81, 159, 160, 219
MalI	GATC	3 cut(s)	49, 128, 156
MboI	GATC	3 cut(s)	47, 126, 154
MboII	GAAGA	2 cut(s)	57, 106
MhlI	GDGCHC	2 cut(s)	8, 200
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	58, 179
NdeII	GATC	3 cut(s)	47, 126, 154
NlaIV	GGNNCC	3 cut(s)	7, 162, 198
PceI	AGGCCT	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	54, 175
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	7, 162, 198
PspOMI	GGGCCC	1 cut(s)	196
PspPI	GGNCC	3 cut(s)	160, 196, 197
SatI	GCNGC	2 cut(s)	53, 174
Sau3AI	GATC	3 cut(s)	47, 126, 154
Sau96I	GGNCC	3 cut(s)	160, 196, 197
SduI	GDGCHC	2 cut(s)	8, 200
SetI	ASST	2 cut(s)	110, 225
SfaNI	GCATC	4 cut(s)	81, 159, 160, 219
SinI	GGWCC	1 cut(s)	160
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	4 cut(s)	59, 70, 89, 174
StuI	AGGCCT	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	40, 120
TaqI	TCGA	3 cut(s)	153, 168, 204
TauI	GCSGC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.