Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Forward (+)

59133986 .. 59136399

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG402600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCCTTGTATCATTGGAGATCGCAACCTCCGCGACGCCACCGCATCGGCTATGCCTTCCTGCCGAAGAAAGAGCAGACCTTCATCCAACCGTCGCTGATCGCCCACGCTGGACAACACGGCATCGATCTGGTCCCCGTCGATGCTGCCAAGGCCTTGACCCAGCAGGGCCCCTTAGACTGCATCATCCACAAGCTCTACGACTACGACTGGAATCAGCAATTGAAGGAATACTCGTCTCTCTATCCCCGCACCGTCATCCTCGACCCGCCCGAGTCCATCGCCCGCCTCCACAACCGGGTCTCAATGCTCGACGTCATCAAAGCCGCCTTCAAAGCCCCGCGAGTCGAGAATGTCGGGGTCCCCAAGCAGGTAAGCACTAGAGAAGAAGAGGATAAGAGTAAGGATTTTTTTGGTGGTGAAACCGATGAACTCTTCACTGGGATTTATACCCATAGAGCTACTTGGGGCATACATAACGATCATGAACCAAGATCCTCACACGCTGCCCCAAAATCCATCAAGAAACCAAAAGGTTTTCATTATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

183

Amino Acids

21.01

Weight (kDa)

8.89

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	15 - 94	1.2e-28	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	361
AccII	CGCG	2 cut(s)	34, 343
AciI	CCGC	7 cut(s)	32, 43, 250, 269, 286, 327, 341
AclWI	GGATC	1 cut(s)	489
AcyI	GRCGYC	2 cut(s)	37, 315
AfiI	CCNNNNNNNGG	2 cut(s)	298, 370
AgsI	TTSAA	2 cut(s)	226, 334
AluBI	AGCT	2 cut(s)	196, 461
AluI	AGCT	2 cut(s)	196, 461
Alw26I	GTCTC	2 cut(s)	243, 307
AlwI	GGATC	1 cut(s)	489
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	153, 169
ApaI	GGGCCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	146, 506
AspS9I	GGNCC	4 cut(s)	133, 169, 170, 361
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	133, 361
BaeGI	GKGCMC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	133, 493
BccI	CCATC	2 cut(s)	287, 527
BceAI	ACGGC	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	243, 307
BfaI	CTAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	3 cut(s)	147, 327, 507
BlsI	GCNGC	3 cut(s)	148, 328, 508
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	2 cut(s)	133, 361
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	4 cut(s)	133, 169, 170, 361
BmiI	GGNNCC	5 cut(s)	135, 171, 172, 362, 363
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	4 cut(s)	54, 132, 133, 192
BmuI	ACTGGG	1 cut(s)	450
BpuMI	CCSGG	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	126
BsaHI	GRCGYC	2 cut(s)	37, 315
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 370
Bse1I	ACTGG	2 cut(s)	215, 445
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	84, 186, 258
BseLI	CCNNNNNNNGG	2 cut(s)	298, 370
BseNI	ACTGG	2 cut(s)	215, 445
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	2 cut(s)	133, 493
BseYI	CCCAGC	1 cut(s)	162
Bsh1236I	CGCG	2 cut(s)	34, 343
BshFI	GGCC	2 cut(s)	155, 171
BshVI	ATCGAT	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	2 cut(s)	119, 347
BslI	CCNNNNNNNGG	2 cut(s)	298, 370
BsmAI	GTCTC	2 cut(s)	243, 307
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	2 cut(s)	119, 347
BsnI	GGCC	2 cut(s)	155, 171
Bso31I	GGTCTC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	272
Bsp120I	GGGCCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	5 cut(s)	20, 99, 127, 481, 494
BspACI	CCGC	7 cut(s)	32, 43, 250, 269, 286, 327, 341
BspANI	GGCC	2 cut(s)	155, 171
BspDI	ATCGAT	1 cut(s)	126
BspFNI	CGCG	2 cut(s)	34, 343
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	5 cut(s)	135, 171, 172, 362, 363
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	215, 445
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	5 cut(s)	20, 99, 127, 481, 494
BssNI	GRCGYC	2 cut(s)	37, 315
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	93, 256
Bst6I	CTCTTC	2 cut(s)	384, 440
BstACI	GRCGYC	2 cut(s)	37, 315
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	3 cut(s)	84, 186, 258
BstFNI	CGCG	2 cut(s)	34, 343
BstKTI	GATC	5 cut(s)	23, 102, 130, 484, 497
BstMAI	GTCTC	2 cut(s)	243, 307
BstMBI	GATC	5 cut(s)	20, 99, 127, 481, 494
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 152, 335
BstSCI	CCNGG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	173
BstUI	CGCG	2 cut(s)	34, 343
BstV1I	GCAGC	2 cut(s)	133, 493
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	155, 171
BsuTUI	ATCGAT	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	84, 186, 258
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	286
CciI	TCATGA	1 cut(s)	484
Cfr13I	GGNCC	4 cut(s)	133, 169, 170, 361
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	1 cut(s)	45
CviAII	CATG	1 cut(s)	485
CviJI	RGCY	7 cut(s)	51, 155, 171, 196, 326, 338, 461
CviKI_1	RGCY	7 cut(s)	51, 155, 171, 196, 326, 338, 461
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	5 cut(s)	22, 101, 129, 483, 496
DpnII	GATC	5 cut(s)	20, 99, 127, 481, 494
Eam1104I	CTCTTC	2 cut(s)	384, 440
EarI	CTCTTC	2 cut(s)	384, 440
Eco130I	CCWWGG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	133, 361
Eco88I	CYCGRG	1 cut(s)	272
EcoO109I	RGGNCCY	3 cut(s)	169, 170, 361
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	1 cut(s)	488
FaiI	YATR	7 cut(s)	54, 450, 456, 473, 477, 486, 546
FaqI	GGGAC	2 cut(s)	119, 347
FatI	CATG	1 cut(s)	484
FauI	CCCGC	4 cut(s)	257, 276, 293, 348
Fnu4HI	GCNGC	3 cut(s)	147, 327, 507
FokI	GGATG	3 cut(s)	71, 173, 245
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	147, 327, 507
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	3 cut(s)	147, 327, 507
GsaI	CCCAGC	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	155, 171
HapII	CCGG	1 cut(s)	298
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	2 cut(s)	37, 315
Hin1II	CATG	1 cut(s)	488
HinfI	GANTC	3 cut(s)	214, 275, 345
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	431
Hpy188III	TCNNGA	3 cut(s)	349, 485, 523
Hpy99I	CGWCG	4 cut(s)	39, 97, 143, 317
HpyAV	CCTTC	4 cut(s)	67, 91, 220, 340
HpyCH4III	ACNGT	2 cut(s)	93, 256
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 152, 335
HpyF3I	CTNAG	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	2 cut(s)	37, 315
Hsp92II	CATG	1 cut(s)	488
KflI	GGGWCCC	1 cut(s)	361
Kzo9I	GATC	5 cut(s)	20, 99, 127, 481, 494
LpnPI	CCDG	9 cut(s)	74, 96, 116, 152, 176, 196, 311, 356, 426
Lsp1109I	GCAGC	2 cut(s)	133, 493
LweI	GCATC	4 cut(s)	54, 132, 133, 192
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	315
MalI	GATC	5 cut(s)	22, 101, 129, 483, 496
MboI	GATC	5 cut(s)	20, 99, 127, 481, 494
MboII	GAAGA	4 cut(s)	79, 398, 401, 427
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	284, 354
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	39, 272, 299, 385, 508
MseI	TTAA	1 cut(s)	550
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	34, 343
MwoI	GCNNNNNNNGC	3 cut(s)	31, 152, 335
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	5 cut(s)	20, 99, 127, 481, 494
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	5 cut(s)	135, 171, 172, 362, 363
PagI	TCATGA	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	148, 328, 508
PleI	GAGTC	2 cut(s)	283, 353
PpsI	GAGTC	2 cut(s)	283, 353
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	162
PspN4I	GGNNCC	5 cut(s)	135, 171, 172, 362, 363
PspOMI	GGGCCC	1 cut(s)	169
PspPI	GGNCC	4 cut(s)	133, 169, 170, 361
PspPPI	RGGWCCY	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	550
SatI	GCNGC	3 cut(s)	147, 327, 507
Sau3AI	GATC	5 cut(s)	20, 99, 127, 481, 494
Sau96I	GGNCC	4 cut(s)	133, 169, 170, 361
SchI	GAGTC	2 cut(s)	284, 354
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	7 cut(s)	31, 83, 198, 318, 375, 463, 538
SfaNI	GCATC	4 cut(s)	54, 132, 133, 192
SinI	GGWCC	2 cut(s)	133, 361
Sse9I	AATT	1 cut(s)	221
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	7 cut(s)	32, 43, 250, 269, 286, 327, 341
SspMI	CTAG	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	93, 256
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	5 cut(s)	126, 141, 264, 312, 348
TasI	AATT	1 cut(s)	221
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	550
Tru9I	TTAA	1 cut(s)	550
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	2 cut(s)	146, 506
TspDTI	ATGAA	4 cut(s)	73, 444, 501, 530
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	2 cut(s)	133, 361
XspI	CTAG	1 cut(s)	381
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.