Rh3CG185600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016460
Physical Location & Seq
Reverse (-)
16293946 .. 16294869
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG185600.1

Sequence Viewer

Length: 777 bp
ATGCCGGTTACTACAGCTGGGTACGGTTCCCTCTCCGGTAACCCTATACAGCAGACAGGTGCCCTAATTCTTGCCCATCCACAACAAGGCAGGTGGCAGCCAACTGTCCCTTCCACATATGCTACATCTTCAGAAGCTGGTCCTTCTGGAACGAATACCCTCAACAAAGGTAAAGCCAAATTTGATGACTGGGTAGTTCCATCTCCTACTATGTCGCCACCTCATCTAATTTCTCCTGATGTAGAGGACATGCAACTGGTAGTTTCCCTTTCCTTAGCTGAGCTGGCGGACACATCCACAACACATCATCGTCTCACTCCACCACCATTGGACCCATATCTTCAGAGGGGCTTTCAGTCTGACCCATTAGTCTTGCAAGCTATGTTAGCTCATCAGGAACCGTCACCTCCAACAATCCCACCAGTCCCACTCTCAACAAATATCCACCCTGAAGTTTTTGCTGCAATTCCACCAACAATCCCTCCGTTTGGGTCTCTTGCTATACTTGCTCAGCAATTCCAGTTCCTCAAATTACTTAAAAGGCTGCAAGATGATTTGGCTGAGGATTTTTGTCAAACCAAGCGCCACCGCACTATAGATTCCGATGATAGTACTCGGGTGGATCAGGCTATTCCCTCCCGAGTCCCTACTAAACCACGTCGTGGGCGTCCTCTGTCCGCTACTGCCTCTGGTAAGGCCAAGGGGTTGGCTCGACGAGGTCGTCCAAAGAAGATTCAAACTTCTAATGTCCCTACTGCTCCGGCTACTGTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

27.83

Weight (kDa)

9.3

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 81
AasI GACNNNNNNGTC 2 cut(s) 368, 720
Acc36I ACCTGC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 662
AciI CCGC 3 cut(s) 287, 589, 678
AclWI GGATC 1 cut(s) 630
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 3 cut(s) 114, 326, 471
AcyI GRCGYC 1 cut(s) 667
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 2 cut(s) 23, 613
AfiI CCNNNNNNNGG 3 cut(s) 86, 488, 662
AgsI TTSAA 2 cut(s) 737, 773
AjiI CACGTC 1 cut(s) 659
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
AluBI AGCT 6 cut(s) 17, 137, 278, 283, 380, 389
AluI AGCT 6 cut(s) 17, 137, 278, 283, 380, 389
Alw26I GTCTC 2 cut(s) 317, 498
AlwI GGATC 1 cut(s) 630
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 2 cut(s) 615, 639
AoxI GGCC 1 cut(s) 696
ApeKI GCWGC 3 cut(s) 97, 461, 544
ApoI RAATTY 1 cut(s) 179
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 2 cut(s) 140, 331
AsuHPI GGTGA 1 cut(s) 396
AvaI CYCGRG 2 cut(s) 615, 639
AvaII GGWCC 2 cut(s) 140, 331
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 59
BbvCI CCTCAGC 1 cut(s) 561
BbvI GCAGC 3 cut(s) 109, 448, 531
BccI CCATC 2 cut(s) 84, 208
BcoDI GTCTC 2 cut(s) 317, 498
BfmI CTRYAG 2 cut(s) 12, 594
BfoI RGCGCY 1 cut(s) 586
BfuAI ACCTGC 1 cut(s) 81
BisI GCNGC 3 cut(s) 98, 462, 545
BlpI GCTNAGC 2 cut(s) 279, 510
BlsI GCNGC 3 cut(s) 99, 463, 546
BmcAI AGTACT 1 cut(s) 613
Bme18I GGWCC 2 cut(s) 140, 331
BmeT110I CYCGRG 2 cut(s) 615, 639
BmgBI CACGTC 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 140, 331
BmiI GGNNCC 4 cut(s) 28, 61, 333, 399
BmrI ACTGGG 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 199
Bpu10I CCTNAGC 2 cut(s) 274, 561
Bpu1102I GCTNAGC 2 cut(s) 279, 510
BsaHI GRCGYC 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 699
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 488, 662
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 4 cut(s) 194, 261, 422, 520
BseDI CCNNGG 1 cut(s) 699
BseGI GGATG 2 cut(s) 76, 293
BseLI CCNNNNNNNGG 3 cut(s) 86, 488, 662
BseMII CTCAG 3 cut(s) 270, 524, 552
BseNI ACTGG 4 cut(s) 194, 261, 422, 520
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 3 cut(s) 109, 448, 531
BseYI CCCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 698
BshNI GGYRCC 1 cut(s) 59
BsiHKCI CYCGRG 2 cut(s) 615, 639
BsiSI CCGG 3 cut(s) 5, 36, 761
BslFI GGGAC 4 cut(s) 92, 410, 629, 734
BslI CCNNNNNNNGG 3 cut(s) 86, 488, 662
BsmAI GTCTC 2 cut(s) 317, 498
BsmBI CGTCTC 1 cut(s) 317
BsmFI GGGAC 4 cut(s) 92, 410, 629, 734
BsnI GGCC 1 cut(s) 698
Bso31I GGTCTC 1 cut(s) 498
BsoBI CYCGRG 2 cut(s) 615, 639
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 622
Bsp1720I GCTNAGC 2 cut(s) 279, 510
BspACI CCGC 3 cut(s) 287, 589, 678
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 3 cut(s) 271, 523, 553
BspLI GGNNCC 4 cut(s) 28, 61, 333, 399
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 1 cut(s) 630
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 4 cut(s) 194, 261, 422, 520
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 1 cut(s) 622
BssNI GRCGYC 1 cut(s) 667
BssT1I CCWWGG 1 cut(s) 699
Bst4CI ACNGT 4 cut(s) 26, 106, 402, 769
BstACI GRCGYC 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 285, 378
BstDEI CTNAG 4 cut(s) 274, 279, 510, 561
BstEII GGTNACC 1 cut(s) 38
BstF5I GGATG 2 cut(s) 76, 293
BstH2I RGCGCY 1 cut(s) 586
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 1 cut(s) 625
BstMAI GTCTC 2 cut(s) 317, 498
BstMBI GATC 1 cut(s) 622
BstMWI GCNNNNNNNGC 3 cut(s) 284, 386, 506
BstNSI RCATGY 1 cut(s) 253
BstPI GGTNACC 1 cut(s) 38
BstSFI CTRYAG 2 cut(s) 12, 594
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 3 cut(s) 109, 448, 531
BstXI CCANNNNNNTGG 1 cut(s) 706
BsuRI GGCC 1 cut(s) 698
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 2 cut(s) 76, 293
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 285, 378
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 1 cut(s) 585
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 140, 331
CseI GACGC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 22, 612
CspCI CAANNNNNGTGG 4 cut(s) 74, 109, 309, 344
CviAII CATG 1 cut(s) 250
CviQI GTAC 2 cut(s) 22, 612
DdeI CTNAG 4 cut(s) 274, 279, 510, 561
DpnI GATC 1 cut(s) 624
DpnII GATC 1 cut(s) 622
DraIII CACNNNGTG 1 cut(s) 662
DrdI GACNNNNNNGTC 2 cut(s) 368, 720
DseDI GACNNNNNNGTC 2 cut(s) 368, 720
EciI GGCGGA 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 699
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 2 cut(s) 140, 331
Eco57I CTGAAG 3 cut(s) 114, 326, 471
Eco88I CYCGRG 2 cut(s) 615, 639
Eco91I GGTNACC 1 cut(s) 38
EcoO65I GGTNACC 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 699
Esp3I CGTCTC 1 cut(s) 317
FaeI CATG 1 cut(s) 253
FaiI YATR 9 cut(s) 47, 118, 120, 212, 251, 337, 383, 503, 596
FaqI GGGAC 4 cut(s) 92, 410, 629, 734
FatI CATG 1 cut(s) 249
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 98, 462, 545
FokI GGATG 2 cut(s) 63, 280
Fsp4HI GCNGC 3 cut(s) 98, 462, 545
GlaI GCGC 1 cut(s) 584
GluI GCNGC 3 cut(s) 98, 462, 545
GsaI CCCAGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 586
HaeIII GGCC 1 cut(s) 698
HapII CCGG 3 cut(s) 5, 36, 761
HgaI GACGC 1 cut(s) 656
HhaI GCGC 1 cut(s) 585
Hin1I GRCGYC 1 cut(s) 667
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HinfI GANTC 3 cut(s) 599, 642, 733
HpaII CCGG 3 cut(s) 5, 36, 761
HphI GGTGA 1 cut(s) 396
Hpy188I TCNGA 4 cut(s) 133, 345, 361, 604
Hpy188III TCNNGA 4 cut(s) 147, 236, 395, 639
Hpy99I CGWCG 2 cut(s) 663, 717
HpyAV CCTTC 2 cut(s) 120, 153
HpyCH4III ACNGT 4 cut(s) 26, 106, 402, 769
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 4 cut(s) 253, 376, 464, 547
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 386, 506
HpyF3I CTNAG 4 cut(s) 274, 279, 510, 561
HpySE526I ACGT 1 cut(s) 658
Hsp92I GRCGYC 1 cut(s) 667
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 1 cut(s) 583
Kzo9I GATC 1 cut(s) 622
LmnI GCTCC 1 cut(s) 763
Lsp1109I GCAGC 3 cut(s) 109, 448, 531
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 3 cut(s) 7, 38, 402
MalI GATC 1 cut(s) 624
MboI GATC 1 cut(s) 622
MboII GAAGA 3 cut(s) 120, 332, 742
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 6 cut(s) 66, 179, 228, 465, 515, 530
MlyI GAGTC 1 cut(s) 651
MmeI TCCRAC 1 cut(s) 434
MseI TTAA 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 3 cut(s) 5, 36, 761
MwoI GCNNNNNNNGC 3 cut(s) 284, 386, 506
NdeI CATATG 1 cut(s) 118
NdeII GATC 1 cut(s) 622
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 4 cut(s) 28, 61, 333, 399
NmuCI GTSAC 1 cut(s) 402
NspI RCATGY 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 81
PcsI WCGNNNNNNNCGW 2 cut(s) 664, 718
PfeI GAWTC 2 cut(s) 599, 733
PflFI GACNNNGTC 1 cut(s) 717
PflMI CCANNNNNTGG 1 cut(s) 662
PkrI GCNGC 3 cut(s) 99, 463, 546
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
PspEI GGTNACC 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 4 cut(s) 28, 61, 333, 399
PspPI GGNCC 2 cut(s) 140, 331
PstNI CAGNNNCTG 1 cut(s) 137
PsyI GACNNNGTC 1 cut(s) 717
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 23, 613
RsaNI GTAC 2 cut(s) 22, 612
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 98, 462, 545
Sau3AI GATC 1 cut(s) 622
Sau96I GGNCC 2 cut(s) 140, 331
ScaI AGTACT 1 cut(s) 613
SchI GAGTC 1 cut(s) 651
SduI GDGCHC 1 cut(s) 64
SfcI CTRYAG 2 cut(s) 12, 594
SinI GGWCC 2 cut(s) 140, 331
Sse9I AATT 6 cut(s) 66, 179, 228, 465, 515, 530
SsiI CCGC 3 cut(s) 287, 589, 678
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 4 cut(s) 26, 106, 402, 769
TaiI ACGT 1 cut(s) 661
TaqI TCGA 1 cut(s) 712
TasI AATT 6 cut(s) 66, 179, 228, 465, 515, 530
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 2 cut(s) 599, 733
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 3 cut(s) 97, 461, 544
Tsp45I GTSAC 1 cut(s) 402
TspGWI ACGGA 1 cut(s) 474
Tth111I GACNNNGTC 1 cut(s) 717
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 140, 331
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.