Rh4CG121700

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0016460
Physical Location & Seq
Reverse (-)
23363286 .. 23365170
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG121700.1

Sequence Viewer

Length: 1119 bp
ATGTCGCCACCTCATCCAATTTCTCCTAACGTGGAGGACATGCAACTGGCAGTTTCCCTTTCCTTAGCTGAGCTGGTGGACACACCCACAACACATCATCGTTTCACTCCACCGCCATTAGACCTAGATCTTCAGATGGGCTTTCAGTCTGACCCATCAGTCTTGCAAGCTATGTTAGCTCATCAGGAAGTACTCTTGGATCCTACTTTACTTGGGCCTACTCCAATGGACCCACCACCAGATTTACCTATATTTTCACTTCCTCCTTTTTTAGACCCATATACCCGACACTCCTATTCTCTTAACCCCTATCCTCTCCATATCCCTTCTCTCCATCCGTCACCTCCAACAATCCCACTAGTCCCAATCTCAACAAATATCCACCCTGAAGCTTTTGCTGCAATTCCACCAACAATCCCTCCGTTTGGGTCTCTTGCTATACTTGCTCAGCAATTCCAGTTCCTCAAATTACGTAAAAGGTTGCAAGATGTTTTGGCTGAGGATTTTCGTCAAACCAAGCACCACCGCACTATGGATTTTGATGATAGTACTCTGGTGGATAAGGCTATTCCCTCTCGAGTCCCTACTACACCACGTCATCGGCATCCTCCGTCCGCTACTGCCTCTGGTAAGGCTAAGGGGTCGGCTCGACGTGGTCTTCCAAAGAAGATTCAAACTTCTAATGTCCCTACTGCTCTGGCTACTGTTGAACAGGAAAGGTTAGATCGTTGCTTGGCTAACTCAGATTGGTGCTCTGCTCTTCCTCATACTCAGGTCTTTAATTTACCTATTATCGGATCAGATCACCGACCTCTTCTTGTTGATTCCTATCCAACAGAGGTTCGTTCTCCTAAACCTTTCCACTTTGAGCATATTTGGACTACGCCAAATTCGTGCGAGCAGATTATTTCTAAGGCCTGGATAAATGCTTCACGCTCTATTGCTATGCCTACCTGGATTGCCAATTTGAAGTCTTGTAGAAAATCCTTATTGCTCTGGAGTAGGGAGGCTTTTCCAAATTCTCATAAACAGATTGAAGACCTACTTACTCAACTTAATCATGTTCATAATAGTATGGATTTGGATTATGCTTTCCAAATCTTGGCCATCTTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

372

Amino Acids

41.69

Weight (kDa)

6.54

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 1102
AciI CCGC 3 cut(s) 113, 526, 615
AclWI GGATC 3 cut(s) 194, 207, 805
AcoI YGGCCR 1 cut(s) 1104
AcsI RAATTY 2 cut(s) 889, 1018
AcuI CTGAAG 2 cut(s) 116, 408
AfaI GTAC 2 cut(s) 192, 550
AfiI CCNNNNNNNGG 4 cut(s) 425, 532, 794, 1102
AgsI TTSAA 4 cut(s) 674, 710, 970, 1037
AhlI ACTAGT 1 cut(s) 358
AjiI CACGTC 2 cut(s) 596, 653
AjnI CCWGG 2 cut(s) 917, 953
AluBI AGCT 5 cut(s) 68, 73, 170, 179, 392
AluI AGCT 5 cut(s) 68, 73, 170, 179, 392
Alw21I GWGCWC 1 cut(s) 755
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 3 cut(s) 194, 207, 805
Ama87I CYCGRG 1 cut(s) 576
AoxI GGCC 3 cut(s) 215, 915, 1104
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 2 cut(s) 889, 1018
AspS9I GGNCC 2 cut(s) 215, 229
AsuHPI GGTGA 2 cut(s) 333, 797
AsuII TTCGAA 1 cut(s) 1113
AvaI CYCGRG 1 cut(s) 576
AvaII GGWCC 1 cut(s) 229
BalI TGGCCA 1 cut(s) 1106
BamHI GGATCC 1 cut(s) 199
BbsI GAAGAC 2 cut(s) 650, 1044
Bbv12I GWGCWC 1 cut(s) 755
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 1 cut(s) 385
BccI CCATC 4 cut(s) 130, 163, 342, 1115
BciT130I CCWGG 2 cut(s) 919, 955
BcoDI GTCTC 1 cut(s) 435
BcuI ACTAGT 1 cut(s) 358
BfaI CTAG 2 cut(s) 125, 359
BglII AGATCT 1 cut(s) 127
BisI GCNGC 1 cut(s) 399
BlpI GCTNAGC 2 cut(s) 69, 447
BlsI GCNGC 1 cut(s) 400
BmcAI AGTACT 2 cut(s) 192, 550
Bme1390I CCNGG 2 cut(s) 919, 955
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 576
BmgBI CACGTC 2 cut(s) 596, 653
BmgT120I GGNCC 2 cut(s) 215, 229
BmiI GGNNCC 2 cut(s) 201, 231
BmrFI CCNGG 2 cut(s) 919, 955
BmsI GCATC 1 cut(s) 613
BpiI GAAGAC 2 cut(s) 650, 1044
BpmI CTGGAG 1 cut(s) 1018
Bpu10I CCTNAGC 3 cut(s) 64, 498, 636
Bpu1102I GCTNAGC 2 cut(s) 69, 447
Bpu14I TTCGAA 1 cut(s) 1113
BsaAI YACGTR 1 cut(s) 473
BsaBI GATNNNNATC 1 cut(s) 828
BsaI GGTCTC 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bsc4I CCNNNNNNNGG 4 cut(s) 425, 532, 794, 1102
Bse1I ACTGG 2 cut(s) 51, 457
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 2 cut(s) 919, 955
BseGI GGATG 3 cut(s) 13, 334, 604
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 4 cut(s) 425, 532, 794, 1102
BseMII CTCAG 5 cut(s) 60, 461, 489, 756, 785
BseNI ACTGG 2 cut(s) 51, 457
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 3 cut(s) 217, 917, 1106
BsiHKAI GWGCWC 1 cut(s) 755
BsiHKCI CYCGRG 1 cut(s) 576
BslFI GGGAC 3 cut(s) 347, 566, 671
BslI CCNNNNNNNGG 4 cut(s) 425, 532, 794, 1102
BsmAI GTCTC 1 cut(s) 435
BsmFI GGGAC 3 cut(s) 347, 566, 671
BsnI GGCC 3 cut(s) 217, 917, 1106
Bso31I GGTCTC 1 cut(s) 435
BsoBI CYCGRG 1 cut(s) 576
Bsp119I TTCGAA 1 cut(s) 1113
Bsp1286I GDGCHC 1 cut(s) 755
Bsp143I GATC 5 cut(s) 127, 199, 724, 797, 802
Bsp1720I GCTNAGC 2 cut(s) 69, 447
BspACI CCGC 3 cut(s) 113, 526, 615
BspANI GGCC 3 cut(s) 217, 917, 1106
BspCNI CTCAG 5 cut(s) 61, 460, 490, 755, 784
BspLI GGNNCC 2 cut(s) 201, 231
BspPI GGATC 3 cut(s) 194, 207, 805
BspQI GCTCTTC 1 cut(s) 765
BspT104I TTCGAA 1 cut(s) 1113
BspTNI GGTCTC 1 cut(s) 435
BsrI ACTGG 2 cut(s) 51, 457
BssMI GATC 5 cut(s) 127, 199, 724, 797, 802
Bst2UI CCWGG 2 cut(s) 919, 955
Bst4CI ACNGT 1 cut(s) 706
Bst6I CTCTTC 2 cut(s) 765, 819
BstBAI YACGTR 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 1113
BstC8I GCNNGC 2 cut(s) 168, 899
BstDEI CTNAG 8 cut(s) 64, 69, 447, 498, 636, 742, 771, 912
BstF5I GGATG 3 cut(s) 13, 334, 604
BstKTI GATC 5 cut(s) 130, 202, 727, 800, 805
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 5 cut(s) 127, 199, 724, 797, 802
BstMWI GCNNNNNNNGC 3 cut(s) 176, 398, 443
BstNI CCWGG 2 cut(s) 919, 955
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 2 cut(s) 917, 953
BstSNI TACGTA 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 2 cut(s) 650, 1044
BstX2I RGATCY 2 cut(s) 127, 199
BstYI RGATCY 2 cut(s) 127, 199
BsuRI GGCC 3 cut(s) 217, 917, 1106
BtrI CACGTC 2 cut(s) 596, 653
BtsCI GGATG 3 cut(s) 13, 334, 604
Cac8I GCNNGC 2 cut(s) 168, 899
Cfr13I GGNCC 2 cut(s) 215, 229
Csp6I GTAC 2 cut(s) 191, 549
CviAII CATG 2 cut(s) 40, 1061
CviQI GTAC 2 cut(s) 191, 549
DdeI CTNAG 8 cut(s) 64, 69, 447, 498, 636, 742, 771, 912
DpnI GATC 5 cut(s) 129, 201, 726, 799, 804
DpnII GATC 5 cut(s) 127, 199, 724, 797, 802
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 1104
Eam1104I CTCTTC 2 cut(s) 765, 819
EarI CTCTTC 2 cut(s) 765, 819
Eco105I TACGTA 1 cut(s) 473
Eco147I AGGCCT 1 cut(s) 917
Eco31I GGTCTC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 116, 408
Eco88I CYCGRG 1 cut(s) 576
EcoRII CCWGG 2 cut(s) 917, 953
FaeI CATG 2 cut(s) 43, 1064
FalI AAGNNNNNCTT 2 cut(s) 1029, 1061
FaqI GGGAC 3 cut(s) 347, 566, 671
FatI CATG 2 cut(s) 39, 1060
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 2 cut(s) 321, 591
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 2 cut(s) 125, 359
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 1018
HaeIII GGCC 3 cut(s) 217, 917, 1106
Hin1II CATG 2 cut(s) 43, 1064
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 3 cut(s) 579, 670, 824
HphI GGTGA 2 cut(s) 333, 797
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 5 cut(s) 135, 151, 745, 797, 802
Hpy188III TCNNGA 3 cut(s) 185, 576, 997
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 1 cut(s) 336
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4IV ACGT 4 cut(s) 30, 472, 595, 652
HpyCH4V TGCA 4 cut(s) 43, 166, 401, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 398, 443
HpyF3I CTNAG 8 cut(s) 64, 69, 447, 498, 636, 742, 771, 912
HpySE526I ACGT 4 cut(s) 30, 472, 595, 652
Hsp92II CATG 2 cut(s) 43, 1064
Kzo9I GATC 5 cut(s) 127, 199, 724, 797, 802
LguI GCTCTTC 1 cut(s) 765
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 1 cut(s) 613
MaeI CTAG 2 cut(s) 125, 359
MaeII ACGT 4 cut(s) 30, 472, 595, 652
MaeIII GTNAC 1 cut(s) 339
MalI GATC 5 cut(s) 129, 201, 726, 799, 804
MboI GATC 5 cut(s) 127, 199, 724, 797, 802
MboII GAAGA 7 cut(s) 122, 650, 679, 752, 806, 1049, 1102
MflI RGATCY 2 cut(s) 127, 199
MhlI GDGCHC 1 cut(s) 755
MlsI TGGCCA 1 cut(s) 1106
MluCI AATT 8 cut(s) 18, 402, 452, 467, 781, 889, 964, 1018
MluNI TGGCCA 1 cut(s) 1106
MlyI GAGTC 1 cut(s) 588
MmeI TCCRAC 2 cut(s) 371, 857
Mox20I TGGCCA 1 cut(s) 1106
MscI TGGCCA 1 cut(s) 1106
MseI TTAA 3 cut(s) 303, 780, 1056
Msp20I TGGCCA 1 cut(s) 1106
MspR9I CCNGG 2 cut(s) 919, 955
MvaI CCWGG 2 cut(s) 919, 955
MwoI GCNNNNNNNGC 3 cut(s) 176, 398, 443
NdeII GATC 5 cut(s) 127, 199, 724, 797, 802
NlaIII CATG 2 cut(s) 43, 1064
NlaIV GGNNCC 2 cut(s) 201, 231
NmuCI GTSAC 1 cut(s) 339
NspI RCATGY 1 cut(s) 43
NspV TTCGAA 1 cut(s) 1113
PaeR7I CTCGAG 1 cut(s) 576
PceI AGGCCT 1 cut(s) 917
PciSI GCTCTTC 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 890
PfeI GAWTC 2 cut(s) 670, 824
PflFI GACNNNGTC 1 cut(s) 654
PflMI CCANNNNNTGG 1 cut(s) 1102
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
Ppu21I YACGTR 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 917, 953
PspGI CCWGG 2 cut(s) 917, 953
PspN4I GGNNCC 2 cut(s) 201, 231
PspPI GGNCC 2 cut(s) 215, 229
PsuI RGATCY 2 cut(s) 127, 199
PsyI GACNNNGTC 1 cut(s) 654
RsaI GTAC 2 cut(s) 192, 550
RsaNI GTAC 2 cut(s) 191, 549
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 3 cut(s) 303, 780, 1056
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 5 cut(s) 127, 199, 724, 797, 802
Sau96I GGNCC 2 cut(s) 215, 229
ScaI AGTACT 2 cut(s) 192, 550
SchI GAGTC 1 cut(s) 588
ScrFI CCNGG 2 cut(s) 919, 955
SduI GDGCHC 1 cut(s) 755
SfaNI GCATC 1 cut(s) 613
Sfr274I CTCGAG 1 cut(s) 576
SfuI TTCGAA 1 cut(s) 1113
SinI GGWCC 1 cut(s) 229
SlaI CTCGAG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
SnaBI TACGTA 1 cut(s) 473
SpeI ACTAGT 1 cut(s) 358
Sse9I AATT 8 cut(s) 18, 402, 452, 467, 781, 889, 964, 1018
SseBI AGGCCT 1 cut(s) 917
SsiI CCGC 3 cut(s) 113, 526, 615
SspMI CTAG 2 cut(s) 125, 359
StuI AGGCCT 1 cut(s) 917
StyD4I CCNGG 2 cut(s) 917, 953
TaaI ACNGT 1 cut(s) 706
TaiI ACGT 4 cut(s) 33, 475, 598, 655
TaqI TCGA 3 cut(s) 577, 649, 1113
TasI AATT 8 cut(s) 18, 402, 452, 467, 781, 889, 964, 1018
TatI WGTACW 2 cut(s) 190, 548
TfiI GAWTC 2 cut(s) 670, 824
Tru1I TTAA 3 cut(s) 303, 780, 1056
Tru9I TTAA 3 cut(s) 303, 780, 1056
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 1055
TspGWI ACGGA 3 cut(s) 327, 411, 600
Tth111I GACNNNGTC 1 cut(s) 654
Van91I CCANNNNNTGG 1 cut(s) 1102
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 2 cut(s) 889, 1018
XceI RCATGY 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 576
XspI CTAG 2 cut(s) 125, 359
ZrmI AGTACT 2 cut(s) 192, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.