Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007066.1

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Forward (+)

47758 .. 48454

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007066.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgaacccaaaaactcctctcaaaactcatctctctctctccagatcgcagcctccgcgacaccaccgcatcggctatgccttctcactgaagaaagagcagaccttcatccaaccgtcgctgatcgcccacgtcggagaacaaggcatcgatctggtccccgttgatgtcgtcaaggccttgacccagcagggccccttcgactgcatcatccacaagctctacgacgacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

78

Amino Acids

8.82

Weight (kDa)

7.95

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AciI	CCGC	2 cut(s)	56, 67
AcuI	CTGAAG	1 cut(s)	110
AjiI	CACGTC	1 cut(s)	133
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
AoxI	GGCC	2 cut(s)	177, 193
ApaI	GGGCCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	49
AspS9I	GGNCC	3 cut(s)	157, 193, 194
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	3 cut(s)	157, 193, 194
BmiI	GGNNCC	3 cut(s)	159, 195, 196
BmsI	GCATC	3 cut(s)	78, 156, 216
BpmI	CTGGAG	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	2 cut(s)	108, 210
BseRI	GAGGAG	1 cut(s)	6
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	179, 195
BshVI	ATCGAT	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	179, 195
Bsp120I	GGGCCC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	44, 123, 151
BspACI	CCGC	2 cut(s)	56, 67
BspANI	GGCC	2 cut(s)	179, 195
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	3 cut(s)	159, 195, 196
BssMI	GATC	3 cut(s)	44, 123, 151
Bst4CI	ACNGT	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	108, 210
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	3 cut(s)	47, 126, 154
BstMBI	GATC	3 cut(s)	44, 123, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	197
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	179, 195
BsuTUI	ATCGAT	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	108, 210
BtsIMutI	CAGTG	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	157, 193, 194
ClaI	ATCGAT	1 cut(s)	150
CviJI	RGCY	5 cut(s)	52, 75, 179, 195, 220
CviKI_1	RGCY	5 cut(s)	52, 75, 179, 195, 220
DpnI	GATC	3 cut(s)	46, 125, 153
DpnII	GATC	3 cut(s)	44, 123, 151
Eco147I	AGGCCT	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	110
EcoO109I	RGGNCCY	2 cut(s)	193, 194
EcoT38I	GRGCYC	1 cut(s)	197
FaiI	YATR	1 cut(s)	78
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	2 cut(s)	95, 197
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	50
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	179, 195
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	1 cut(s)	42
Hpy99I	CGWCG	4 cut(s)	121, 137, 230, 233
HpyAV	CCTTC	3 cut(s)	91, 115, 208
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	44, 123, 151
LpnPI	CCDG	4 cut(s)	55, 140, 176, 200
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	3 cut(s)	78, 156, 216
MaeII	ACGT	1 cut(s)	132
MalI	GATC	3 cut(s)	46, 125, 153
MboI	GATC	3 cut(s)	44, 123, 151
MboII	GAAGA	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	115, 136
MnlI	CCTC	2 cut(s)	27, 63
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	3 cut(s)	44, 123, 151
NlaIV	GGNNCC	3 cut(s)	159, 195, 196
PceI	AGGCCT	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	186
PspN4I	GGNNCC	3 cut(s)	159, 195, 196
PspOMI	GGGCCC	1 cut(s)	193
PspPI	GGNCC	3 cut(s)	157, 193, 194
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	3 cut(s)	44, 123, 151
Sau96I	GGNCC	3 cut(s)	157, 193, 194
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	3 cut(s)	107, 135, 222
SfaNI	GCATC	3 cut(s)	78, 156, 216
SinI	GGWCC	1 cut(s)	157
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	56, 67
StuI	AGGCCT	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	117
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	150, 201
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	17, 97
TspRI	CASTG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.