Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8194460.1

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 435

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8194460.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 325 bp

atcgcagcctccacgatgccaccgcatcggctacgccttcccgccgaagaaagagcagaccttcatccaaccgttgctgatcgcccacgtcggacaacacgacatcgatctagtccccatcgatgcctccaaggtcttgacccagcagggccccttcgactgcatcatccacaagctctacgacgactactggaatcagcaattgaaggaatactcgtctctctatccccgcaccgtcatcctcgaccctcccgagtccatcacccgcctccataaccgggtctcaatgctcgacgtcatcaaagtggccttcaaagccccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

107

Amino Acids

12.35

Weight (kDa)

7.8

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	298
AciI	CCGC	4 cut(s)	23, 42, 230, 266
AcyI	GRCGYC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	206, 314
AjiI	CACGTC	1 cut(s)	89
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw26I	GTCTC	2 cut(s)	223, 287
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	149, 307
ApaI	GGGCCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	149, 150
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	126, 267
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	223, 287
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	252
BmgBI	CACGTC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	149, 150
BmiI	GGNNCC	2 cut(s)	151, 152
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	4 cut(s)	6, 34, 113, 172
BpuMI	CCSGG	1 cut(s)	279
Bsa29I	ATCGAT	2 cut(s)	106, 121
BsaHI	GRCGYC	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	195
BseCI	ATCGAT	2 cut(s)	106, 121
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	64, 166, 238
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	142
BshFI	GGCC	2 cut(s)	151, 309
BshVI	ATCGAT	2 cut(s)	106, 121
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	223, 287
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	151, 309
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	252
Bsp120I	GGGCCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	79, 107
BspACI	CCGC	4 cut(s)	23, 42, 230, 266
BspANI	GGCC	2 cut(s)	151, 309
BspDI	ATCGAT	2 cut(s)	106, 121
BspLI	GGNNCC	2 cut(s)	151, 152
BspTNI	GGTCTC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	79, 107
BssNI	GRCGYC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	73, 236
BstACI	GRCGYC	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	64, 166, 238
BstKTI	GATC	2 cut(s)	82, 110
BstMAI	GTCTC	2 cut(s)	223, 287
BstMBI	GATC	2 cut(s)	79, 107
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	17
Bsu15I	ATCGAT	2 cut(s)	106, 121
BsuRI	GGCC	2 cut(s)	151, 309
BsuTUI	ATCGAT	2 cut(s)	106, 121
BtrI	CACGTC	1 cut(s)	89
BtsCI	GGATG	3 cut(s)	64, 166, 238
Cfr13I	GGNCC	2 cut(s)	149, 150
ClaI	ATCGAT	2 cut(s)	106, 121
CviJI	RGCY	6 cut(s)	8, 31, 151, 176, 309, 318
CviKI_1	RGCY	6 cut(s)	8, 31, 151, 176, 309, 318
DpnI	GATC	2 cut(s)	81, 109
DpnII	GATC	2 cut(s)	79, 107
Eco130I	CCWWGG	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	252
EcoO109I	RGGNCCY	2 cut(s)	149, 150
EcoT14I	CCWWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	130
Esp3I	CGTCTC	1 cut(s)	223
FaiI	YATR	1 cut(s)	274
FaqI	GGGAC	1 cut(s)	99
FauI	CCCGC	3 cut(s)	49, 237, 273
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	51, 153, 225
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	151, 309
HapII	CCGG	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	194, 255
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	137, 252
Hpy99I	CGWCG	3 cut(s)	93, 186, 297
HpyAV	CCTTC	5 cut(s)	47, 71, 164, 200, 320
HpyCH4III	ACNGT	2 cut(s)	73, 236
HpyCH4IV	ACGT	2 cut(s)	88, 295
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpySE526I	ACGT	2 cut(s)	88, 295
Hsp92I	GRCGYC	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	79, 107
LpnPI	CCDG	4 cut(s)	132, 156, 176, 291
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	4 cut(s)	6, 34, 113, 172
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	2 cut(s)	88, 295
MalI	GATC	2 cut(s)	81, 109
MboI	GATC	2 cut(s)	79, 107
MboII	GAAGA	1 cut(s)	59
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	71, 92
MnlI	CCTC	5 cut(s)	19, 137, 252, 259, 279
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	79, 107
NlaIV	GGNNCC	2 cut(s)	151, 152
PcsI	WCGNNNNNNNCGW	2 cut(s)	97, 250
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	151, 152
PspOMI	GGGCCC	1 cut(s)	149
PspPI	GGNCC	2 cut(s)	149, 150
RseI	CAYNNNNRTG	1 cut(s)	303
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	79, 107
Sau96I	GGNCC	2 cut(s)	149, 150
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	5 cut(s)	63, 91, 136, 178, 298
SfaNI	GCATC	4 cut(s)	6, 34, 113, 172
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	4 cut(s)	23, 42, 230, 266
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	73, 236
TaiI	ACGT	2 cut(s)	91, 298
TaqI	TCGA	5 cut(s)	106, 121, 157, 244, 292
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	53
XspI	CTAG	1 cut(s)	111
ZraI	GACGTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.