Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Forward (+)

13036305 .. 13036574

Gene Structure 270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTCTAACAATAATGGGCAGCCTCCGCGACACCACCGCATCGGCTACGCCTTCCCGCCGAAGAAAGAGCAGACCTTCATCCAACCATCGCTGATCGCCCACGCCGGACAACACGACATTGATCTGGTCCCCGTCGATGCAGCCAAGGCCTTGACCCAGCAAGGCCCCTTCGACTGCATTATCTACAAGCTCTACGACGAAGACTGGAATCAGCAATTGAAGGAATACTCGTCTCTCTATCCCCCGCACCGTCATCCTCGACCCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

89

Amino Acids

10.24

Weight (kDa)

7.01

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	13 - 81	2.3e-23	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	28
AciI	CCGC	5 cut(s)	26, 37, 56, 245, 264
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	237
AoxI	GGCC	2 cut(s)	147, 163
ApeKI	GCWGC	2 cut(s)	19, 140
AspS9I	GGNCC	2 cut(s)	127, 164
AvaII	GGWCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	31, 152
BccI	CCATC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	20, 141
BlsI	GCNGC	2 cut(s)	21, 142
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	127, 164
BmiI	GGNNCC	2 cut(s)	129, 166
BmsI	GCATC	2 cut(s)	48, 127
BpiI	GAAGAC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	78, 253
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	31, 152
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	149, 165
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	237
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	149, 165
Bsp143I	GATC	2 cut(s)	93, 121
BspACI	CCGC	5 cut(s)	26, 37, 56, 245, 264
BspANI	GGCC	2 cut(s)	149, 165
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	129, 166
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	93, 121
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	78, 253
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	96, 124
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	2 cut(s)	93, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 146
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	31, 152
BstV2I	GAAGAC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	149, 165
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	78, 253
Cfr13I	GGNCC	2 cut(s)	127, 164
CviJI	RGCY	6 cut(s)	22, 45, 143, 149, 165, 190
CviKI_1	RGCY	6 cut(s)	22, 45, 143, 149, 165, 190
DpnI	GATC	2 cut(s)	95, 123
DpnII	GATC	2 cut(s)	93, 121
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	237
FaqI	GGGAC	1 cut(s)	113
FauI	CCCGC	2 cut(s)	63, 252
Fnu4HI	GCNGC	2 cut(s)	20, 141
FokI	GGATG	2 cut(s)	65, 240
Fsp4HI	GCNGC	2 cut(s)	20, 141
GluI	GCNGC	2 cut(s)	20, 141
GsaI	CCCAGC	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	149, 165
HapII	CCGG	1 cut(s)	105
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	105
Hpy99I	CGWCG	2 cut(s)	137, 200
HpyAV	CCTTC	4 cut(s)	61, 85, 178, 214
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	140, 177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 146
Kzo9I	GATC	2 cut(s)	93, 121
LpnPI	CCDG	4 cut(s)	110, 118, 170, 190
Lsp1109I	GCAGC	2 cut(s)	31, 152
LweI	GCATC	2 cut(s)	48, 127
MalI	GATC	2 cut(s)	95, 123
MboI	GATC	2 cut(s)	93, 121
MboII	GAAGA	2 cut(s)	73, 212
MfeI	CAATTG	1 cut(s)	215
MluCI	AATT	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	2 cut(s)	33, 267
MspI	CCGG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	25, 146
NdeII	GATC	2 cut(s)	93, 121
NlaIV	GGNNCC	2 cut(s)	129, 166
PceI	AGGCCT	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	21, 142
PspFI	CCCAGC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	129, 166
PspPI	GGNCC	2 cut(s)	127, 164
SatI	GCNGC	2 cut(s)	20, 141
Sau3AI	GATC	2 cut(s)	93, 121
Sau96I	GGNCC	2 cut(s)	127, 164
SetI	ASST	2 cut(s)	77, 192
SfaNI	GCATC	2 cut(s)	48, 127
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	215
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	5 cut(s)	26, 37, 56, 245, 264
StuI	AGGCCT	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	3 cut(s)	135, 171, 259
TasI	AATT	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	19, 140
TspDTI	ATGAA	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.