Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006212.1

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Reverse (-)

28168 .. 29286

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006212.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggcttttcgatcccgagttgaaattgaacgatgctatggaagtggtgatatcggagagcctccacgatgccaccgcatcggctacgccttcccgccgaagaaagagcagaccttcatccaaccgttgctgatcgcccacgccggacaacacgacatcgatctagtccccatcgatgcctccaaggtcttgacccagcaggaccccttcgactgcatcatccacaagctctacgatgactactggaatcagcaattgaaggaatactcgtctctctatccccgcaccgtcatcctcaaccctcccgagttcatcgcccgcctccataaccgggtctcaatgctcgacgtcatcaaagtggccttcaaagccacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

125

Amino Acids

14.46

Weight (kDa)

6.95

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	351
AciI	CCGC	4 cut(s)	76, 95, 283, 319
AclWI	GGATC	1 cut(s)	6
AcvI	CACGTG	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	23, 29, 259, 367
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	276, 340
AlwI	GGATC	1 cut(s)	6
Ama87I	CYCGRG	2 cut(s)	15, 305
AoxI	GGCC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	59
AvaI	CYCGRG	2 cut(s)	15, 305
AvaII	GGWCC	1 cut(s)	202
BbrPI	CACGTG	1 cut(s)	375
BccI	CCATC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	276, 340
BfaI	CTAG	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	2 cut(s)	15, 305
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	5 cut(s)	23, 59, 87, 166, 225
BpuMI	CCSGG	1 cut(s)	332
Bsa29I	ATCGAT	2 cut(s)	159, 174
BsaAI	YACGTR	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	248
BseCI	ATCGAT	2 cut(s)	159, 174
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	117, 219, 291
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	362
BshVI	ATCGAT	2 cut(s)	159, 174
BsiHKCI	CYCGRG	2 cut(s)	15, 305
BsiSI	CCGG	2 cut(s)	144, 331
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	2 cut(s)	276, 340
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	340
BsoBI	CYCGRG	2 cut(s)	15, 305
Bsp143I	GATC	3 cut(s)	11, 132, 160
BspACI	CCGC	4 cut(s)	76, 95, 283, 319
BspANI	GGCC	1 cut(s)	362
BspDI	ATCGAT	2 cut(s)	159, 174
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	11, 132, 160
BssNI	GRCGYC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	126, 289
BstACI	GRCGYC	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	319
BstF5I	GGATG	3 cut(s)	117, 219, 291
BstKTI	GATC	3 cut(s)	14, 135, 163
BstMAI	GTCTC	2 cut(s)	276, 340
BstMBI	GATC	3 cut(s)	11, 132, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	330
Bsu15I	ATCGAT	2 cut(s)	159, 174
BsuRI	GGCC	1 cut(s)	362
BsuTUI	ATCGAT	2 cut(s)	159, 174
BtgZI	GCGATG	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	117, 219, 291
Cac8I	GCNNGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	202
ClaI	ATCGAT	2 cut(s)	159, 174
CviJI	RGCY	6 cut(s)	5, 61, 84, 229, 362, 371
CviKI_1	RGCY	6 cut(s)	5, 61, 84, 229, 362, 371
DpnI	GATC	3 cut(s)	13, 134, 162
DpnII	GATC	3 cut(s)	11, 132, 160
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	202
Eco72I	CACGTG	1 cut(s)	375
Eco88I	CYCGRG	2 cut(s)	15, 305
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	276
FaiI	YATR	2 cut(s)	39, 327
FaqI	GGGAC	1 cut(s)	152
FauI	CCCGC	3 cut(s)	102, 290, 326
FokI	GGATG	3 cut(s)	104, 206, 278
FspBI	CTAG	1 cut(s)	164
GsaI	CCCAGC	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	2 cut(s)	144, 331
Hin1I	GRCGYC	1 cut(s)	348
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	144, 331
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	3 cut(s)	15, 190, 305
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	5 cut(s)	100, 124, 217, 253, 373
HpyCH4III	ACNGT	2 cut(s)	126, 289
HpyCH4IV	ACGT	2 cut(s)	348, 374
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpySE526I	ACGT	2 cut(s)	348, 374
Hsp92I	GRCGYC	1 cut(s)	348
Kzo9I	GATC	3 cut(s)	11, 132, 160
LpnPI	CCDG	5 cut(s)	157, 185, 209, 229, 344
LweI	GCATC	5 cut(s)	23, 59, 87, 166, 225
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	2 cut(s)	348, 374
MalI	GATC	3 cut(s)	13, 134, 162
MboI	GATC	3 cut(s)	11, 132, 160
MboII	GAAGA	1 cut(s)	112
MfeI	CAATTG	1 cut(s)	254
MluCI	AATT	2 cut(s)	24, 254
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	5 cut(s)	72, 190, 305, 312, 332
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	2 cut(s)	144, 331
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	3 cut(s)	11, 132, 160
NlaIV	GGNNCC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	247
PmaCI	CACGTG	1 cut(s)	375
PmlI	CACGTG	1 cut(s)	375
Ppu21I	YACGTR	1 cut(s)	375
PpuMI	RGGWCCY	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	202
PspCI	CACGTG	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	202
PspPPI	RGGWCCY	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	356
Sau3AI	GATC	3 cut(s)	11, 132, 160
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	5 cut(s)	116, 189, 231, 351, 377
SfaNI	GCATC	5 cut(s)	23, 59, 87, 166, 225
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	24, 254
SsiI	CCGC	4 cut(s)	76, 95, 283, 319
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	126, 289
TaiI	ACGT	2 cut(s)	351, 377
TaqI	TCGA	5 cut(s)	10, 159, 174, 210, 345
TasI	AATT	2 cut(s)	24, 254
TfiI	GAWTC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	106, 301
VpaK11BI	GGWCC	1 cut(s)	202
XspI	CTAG	1 cut(s)	164
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.