Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027853.1

Orthogroup ID

OG0016460

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 800

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027853.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 565 bp

ctgtataaagagcagaccttcatccaaccgtcgcagatcgcccacgccggacaacacggcatcgatctggtccccgtcgatgccgccaaggtcttgacccagcagagccccttcgactgcatcatccacaagctctacgacgacgactggaatcatcaattgaaggaatactcgtctctctatccccgcaccgtcatccttgacccgcacgagtccatcgcccgcctccacaaccgggtctcaatgctagacgtcatcaaagccccgcgagtagagaatgtcgggatccccaagcaggtctccaaattaagtttctgggtttttttttttcaactttatcaagaaaccgttgaaacaggaaaaccgatccgaaggttctcggttctggttcccgtcagttccggcactgtcaactacaacaaccgaaccgaagttccctttctggtttcggttccggttcagggaaatttttgcattttcagaaccgaatccagccctagcaccggccaaaatacaccggccatattttggccgatgcttatggttaccatgcaaactgcacgca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019751 GO:0032958 GO:0033517 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0051766 GO:0052725 GO:0052726 GO:0052746 GO:0071704 GO:0090407 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

188

Amino Acids

21.46

Weight (kDa)

7.98

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016460)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001572
rosa_multiflora	Rmu_co8194460.1_g000001 Rmu_sc0002292.1_g000003 Rmu_sc0006212.1_g000003 Rmu_sc0007066.1_g000011 Rmu_sc0011127.1_g000001 Rmu_sc0013671.1_g000003 Rmu_sc0027853.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010340
rosa_samantha	Rh3BG194900 Rh3CG185600 Rh4CG121700 Rh4DG107300 Rh6DG402600
rosa_wichuraiana	Rw0G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccII	CGCG	1 cut(s)	268
AciI	CCGC	5 cut(s)	84, 187, 206, 223, 266
AclWI	GGATC	3 cut(s)	280, 293, 361
AcoI	YGGCCR	3 cut(s)	505, 519, 530
AcsI	RAATTY	1 cut(s)	466
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	5 cut(s)	235, 295, 461, 503, 528
AgsI	TTSAA	3 cut(s)	163, 332, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AloI	GAACNNNNNNTCC	2 cut(s)	418, 450
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	3 cut(s)	180, 244, 304
AlwI	GGATC	3 cut(s)	280, 293, 361
AoxI	GGCC	3 cut(s)	505, 519, 530
ApoI	RAATTY	1 cut(s)	466
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	110
BauI	CACGAG	1 cut(s)	209
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	3 cut(s)	180, 244, 304
BfaI	CTAG	2 cut(s)	248, 498
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	4 cut(s)	72, 287, 390, 453
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	4 cut(s)	69, 70, 129, 525
BpuMI	CCSGG	1 cut(s)	236
Bsa29I	ATCGAT	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	2 cut(s)	244, 304
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	5 cut(s)	235, 295, 461, 503, 528
Bse118I	RCCGGY	2 cut(s)	503, 517
Bse1I	ACTGG	1 cut(s)	152
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	21, 123, 195
BseLI	CCNNNNNNNGG	5 cut(s)	235, 295, 461, 503, 528
BseNI	ACTGG	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	543
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	3 cut(s)	507, 521, 532
BshVI	ATCGAT	1 cut(s)	63
BsiSI	CCGG	6 cut(s)	48, 235, 402, 455, 504, 518
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	5 cut(s)	235, 295, 461, 503, 528
BsmAI	GTCTC	3 cut(s)	180, 244, 304
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	3 cut(s)	507, 521, 532
Bso31I	GGTCTC	2 cut(s)	244, 304
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	36, 64, 285, 366
BspACI	CCGC	5 cut(s)	84, 187, 206, 223, 266
BspANI	GGCC	3 cut(s)	507, 521, 532
BspDI	ATCGAT	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	4 cut(s)	72, 287, 390, 453
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	3 cut(s)	280, 293, 361
BspTNI	GGTCTC	2 cut(s)	244, 304
BsrFI	RCCGGY	2 cut(s)	503, 517
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	2 cut(s)	503, 517
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	4 cut(s)	36, 64, 285, 366
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	209
Bst4CI	ACNGT	4 cut(s)	30, 193, 349, 409
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	223, 562
BstEII	GGTNACC	1 cut(s)	544
BstF5I	GGATG	3 cut(s)	21, 123, 195
BstFNI	CGCG	1 cut(s)	268
BstKTI	GATC	4 cut(s)	39, 67, 288, 369
BstMAI	GTCTC	3 cut(s)	180, 244, 304
BstMBI	GATC	4 cut(s)	36, 64, 285, 366
BstPI	GGTNACC	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	507, 521, 532
BsuTUI	ATCGAT	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	21, 123, 195
BtsIMutI	CAGTG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	223, 562
Cfr10I	RCCGGY	2 cut(s)	503, 517
Cfr13I	GGNCC	1 cut(s)	70
ClaI	ATCGAT	1 cut(s)	63
CviAII	CATG	1 cut(s)	550
CviJI	RGCY	7 cut(s)	108, 133, 263, 495, 507, 521, 532
CviKI_1	RGCY	7 cut(s)	108, 133, 263, 495, 507, 521, 532
DpnI	GATC	4 cut(s)	38, 66, 287, 368
DpnII	GATC	4 cut(s)	36, 64, 285, 366
EaeI	YGGCCR	3 cut(s)	505, 519, 530
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	110
Eco31I	GGTCTC	2 cut(s)	244, 304
Eco47I	GGWCC	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	544
EcoO65I	GGTNACC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	1 cut(s)	553
FaiI	YATR	4 cut(s)	6, 524, 542, 551
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	549
FauI	CCCGC	4 cut(s)	194, 213, 230, 273
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	3 cut(s)	8, 110, 182
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	2 cut(s)	248, 498
GluI	GCNGC	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	507, 521, 532
HapII	CCGG	6 cut(s)	48, 235, 402, 455, 504, 518
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	151, 212, 488
HpaII	CCGG	6 cut(s)	48, 235, 402, 455, 504, 518
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	371, 482
Hpy188III	TCNNGA	3 cut(s)	94, 283, 341
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	4 cut(s)	34, 80, 143, 146
HpyAV	CCTTC	4 cut(s)	28, 121, 157, 366
HpyCH4III	ACNGT	4 cut(s)	30, 193, 349, 409
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	120, 474, 553, 560
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	36, 64, 285, 366
LweI	GCATC	4 cut(s)	69, 70, 129, 525
MaeI	CTAG	2 cut(s)	248, 498
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	4 cut(s)	38, 66, 287, 368
MboI	GATC	4 cut(s)	36, 64, 285, 366
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	3 cut(s)	158, 305, 466
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	1 cut(s)	236
MseI	TTAA	1 cut(s)	308
MspI	CCGG	6 cut(s)	48, 235, 402, 455, 504, 518
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	268
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	4 cut(s)	36, 64, 285, 366
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	4 cut(s)	72, 287, 390, 453
PfeI	GAWTC	2 cut(s)	151, 488
PflMI	CCANNNNNTGG	1 cut(s)	528
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	99
PspN4I	GGNNCC	4 cut(s)	72, 287, 390, 453
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	4 cut(s)	36, 64, 285, 366
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	20, 93, 135, 255, 300, 377
SfaNI	GCATC	4 cut(s)	69, 70, 129, 525
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	3 cut(s)	158, 305, 466
SsiI	CCGC	5 cut(s)	84, 187, 206, 223, 266
SspMI	CTAG	2 cut(s)	248, 498
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	4 cut(s)	30, 193, 349, 409
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	3 cut(s)	63, 78, 114
TasI	AATT	3 cut(s)	158, 305, 466
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	151, 488
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	412
Van91I	CCANNNNNTGG	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	466
XspI	CTAG	2 cut(s)	248, 498
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.