Belongs to the DEAD box helicase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G38062 |
| fragaria_vesca | FvH4_1g19631 FvH4_1g19631 FvH4_1g19631 FvH4_2g11711 FvH4_2g11711 FvH4_2g11711 |
| malus_domestica | MD01G1039400.v1.1 MD05G1047500.v1.1 MD10G1054400.v1.1 |
| prunus_persica | Prupe.6G201700_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 |
| pyrus_communis | pycom01g06710 pycom05g03950 |
| rosa_chinensis | RchiOBHm_Chr2g0111201 RchiOBHm_Chr6g0261381 RchiOBHm_Chr6g0271001 |
| rosa_laevigata | RLG00000002078 RLG00000013754 RLG00000017873 |
| rosa_multiflora | Rmu_co8194982.1_g000001 Rmu_co8518461.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00132630 Rroxscaffold_3G00237190 Rroxscaffold_7G00197440 |
| rosa_rugosa | Rorug02G0171500 Rorug06G0057600 Rorug07G0206900 Rorug07G0206900 |
| rosa_samantha | Rh2AG224600 Rh2BG236400 Rh2CG227600 Rh2DG232200 Rh6AG177300 Rh6BG180700 Rh6CG176700 Rh6DG168900 Rh7BG338900 Rh7BG339000 |
| rosa_wichuraiana | Rw2G017340 Rw6G015120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 924 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1982, 2165 |
| Acc16I | TGCGCA | 2 cut(s) | 1131, 1164 |
| Acc36I | ACCTGC | 1 cut(s) | 1363 |
| AccB1I | GGYRCC | 1 cut(s) | 1111 |
| AccBSI | CCGCTC | 3 cut(s) | 165, 289, 676 |
| AccI | GTMKAC | 1 cut(s) | 3721 |
| AccII | CGCG | 6 cut(s) | 84, 225, 243, 333, 387, 517 |
| AclI | AACGTT | 1 cut(s) | 2767 |
| AclWI | GGATC | 2 cut(s) | 759, 3359 |
| AcoI | YGGCCR | 1 cut(s) | 3615 |
| AcsI | RAATTY | 7 cut(s) | 2286, 2745, 2840, 3142, 3335, 3624, 3690 |
| AcuI | CTGAAG | 3 cut(s) | 1107, 2357, 3396 |
| AfaI | GTAC | 9 cut(s) | 536, 889, 1805, 1904, 1924, 2181, 3417, 3747, 3820 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 211, 217, 229, 325, 550, 837, 2439 |
| AflII | CTTAAG | 2 cut(s) | 2456, 3770 |
| AjiI | CACGTC | 1 cut(s) | 1838 |
| AjnI | CCWGG | 3 cut(s) | 1264, 1796, 2071 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2354, 2386, 3596, 3628 |
| Alw21I | GWGCWC | 1 cut(s) | 364 |
| Alw26I | GTCTC | 5 cut(s) | 261, 992, 1142, 2455, 3581 |
| AlwI | GGATC | 2 cut(s) | 759, 3359 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 427, 562, 1001, 3132 |
| Ama87I | CYCGRG | 2 cut(s) | 351, 680 |
| ApoI | RAATTY | 7 cut(s) | 2286, 2745, 2840, 3142, 3335, 3624, 3690 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1555, 1587 |
| AseI | ATTAAT | 1 cut(s) | 1872 |
| AspA2I | CCTAGG | 1 cut(s) | 2188 |
| AspLEI | GCGC | 6 cut(s) | 294, 333, 697, 1132, 1165, 1506 |
| AsuC2I | CCSGG | 5 cut(s) | 206, 212, 218, 236, 599 |
| AsuHPI | GGTGA | 4 cut(s) | 631, 1661, 2990, 3613 |
| AvaI | CYCGRG | 2 cut(s) | 351, 680 |
| AvaII | GGWCC | 9 cut(s) | 208, 214, 220, 232, 238, 382, 592, 1091, 1794 |
| AvrII | CCTAGG | 1 cut(s) | 2188 |
| BanI | GGYRCC | 1 cut(s) | 1111 |
| BanII | GRGCYC | 1 cut(s) | 434 |
| BauI | CACGAG | 4 cut(s) | 119, 548, 1119, 2796 |
| BbsI | GAAGAC | 5 cut(s) | 55, 822, 1946, 1978, 3654 |
| Bbv12I | GWGCWC | 1 cut(s) | 364 |
| BccI | CCATC | 4 cut(s) | 11, 38, 940, 1917 |
| BceAI | ACGGC | 1 cut(s) | 679 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 671, 705 |
| BciT130I | CCWGG | 3 cut(s) | 1266, 1798, 2073 |
| BclI | TGATCA | 2 cut(s) | 1575, 2217 |
| BcnI | CCSGG | 5 cut(s) | 206, 212, 218, 236, 599 |
| BcoDI | GTCTC | 5 cut(s) | 261, 992, 1142, 2455, 3581 |
| BfaI | CTAG | 9 cut(s) | 465, 843, 1053, 2097, 2189, 2235, 2742, 3263, 3672 |
| BfmI | CTRYAG | 4 cut(s) | 2475, 3044, 3833, 3869 |
| BfoI | RGCGCY | 1 cut(s) | 1507 |
| BfrI | CTTAAG | 2 cut(s) | 2456, 3770 |
| BfuAI | ACCTGC | 1 cut(s) | 1363 |
| BglII | AGATCT | 3 cut(s) | 2524, 2706, 3408 |
| BlnI | CCTAGG | 1 cut(s) | 2188 |
| BlpI | GCTNAGC | 1 cut(s) | 720 |
| Bme1390I | CCNGG | 8 cut(s) | 206, 212, 218, 236, 599, 1266, 1798, 2073 |
| Bme18I | GGWCC | 9 cut(s) | 208, 214, 220, 232, 238, 382, 592, 1091, 1794 |
| BmeT110I | CYCGRG | 2 cut(s) | 351, 680 |
| BmgBI | CACGTC | 1 cut(s) | 1838 |
| BmiI | GGNNCC | 7 cut(s) | 209, 215, 221, 233, 239, 1113, 3073 |
| BmrFI | CCNGG | 8 cut(s) | 206, 212, 218, 236, 599, 1266, 1798, 2073 |
| BmrI | ACTGGG | 2 cut(s) | 2144, 2159 |
| BmsI | GCATC | 3 cut(s) | 1381, 1594, 1995 |
| BmuI | ACTGGG | 2 cut(s) | 2144, 2159 |
| BpiI | GAAGAC | 5 cut(s) | 55, 822, 1946, 1978, 3654 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3335, 3367 |
| BpmI | CTGGAG | 5 cut(s) | 305, 797, 820, 1615, 2435 |
| Bpu10I | CCTNAGC | 2 cut(s) | 638, 3104 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 720 |
| BpuMI | CCSGG | 5 cut(s) | 206, 212, 218, 236, 599 |
| BsaI | GGTCTC | 1 cut(s) | 261 |
| BsaJI | CCNNGG | 4 cut(s) | 345, 681, 1265, 2188 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 236, 266, 1474, 1504 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 211, 217, 229, 325, 550, 837, 2439 |
| Bse3DI | GCAATG | 2 cut(s) | 990, 1401 |
| BseBI | CCWGG | 3 cut(s) | 1266, 1798, 2073 |
| BseDI | CCNNGG | 4 cut(s) | 345, 681, 1265, 2188 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 211, 217, 229, 325, 550, 837, 2439 |
| BseMI | GCAATG | 2 cut(s) | 990, 1401 |
| BseRI | GAGGAG | 9 cut(s) | 353, 686, 698, 725, 794, 877, 1088, 2576, 2579 |
| BseYI | CCCAGC | 1 cut(s) | 3068 |
| BsgI | GTGCAG | 1 cut(s) | 2168 |
| Bsh1236I | CGCG | 6 cut(s) | 84, 225, 243, 333, 387, 517 |
| Bsh1285I | CGRYCG | 3 cut(s) | 205, 247, 265 |
| BshNI | GGYRCC | 1 cut(s) | 1111 |
| BsiEI | CGRYCG | 3 cut(s) | 205, 247, 265 |
| BsiHKAI | GWGCWC | 1 cut(s) | 364 |
| BsiHKCI | CYCGRG | 2 cut(s) | 351, 680 |
| BsiSI | CCGG | 6 cut(s) | 205, 211, 217, 235, 585, 598 |
| BslFI | GGGAC | 8 cut(s) | 167, 221, 227, 233, 245, 251, 809, 2153 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 211, 217, 229, 325, 550, 837, 2439 |
| BsmAI | GTCTC | 5 cut(s) | 261, 992, 1142, 2455, 3581 |
| BsmBI | CGTCTC | 1 cut(s) | 2455 |
| BsmFI | GGGAC | 8 cut(s) | 167, 221, 227, 233, 245, 251, 809, 2153 |
| BsmI | GAATGC | 2 cut(s) | 532, 2428 |
| Bso31I | GGTCTC | 1 cut(s) | 261 |
| BsoBI | CYCGRG | 2 cut(s) | 351, 680 |
| Bsp1286I | GDGCHC | 2 cut(s) | 364, 434 |
| Bsp1407I | TGTACA | 1 cut(s) | 3745 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 720 |
| BspFNI | CGCG | 6 cut(s) | 84, 225, 243, 333, 387, 517 |
| BspLI | GGNNCC | 7 cut(s) | 209, 215, 221, 233, 239, 1113, 3073 |
| BspMAI | CTGCAG | 3 cut(s) | 3048, 3837, 3873 |
| BspMI | ACCTGC | 1 cut(s) | 1363 |
| BspPI | GGATC | 2 cut(s) | 759, 3359 |
| BspQI | GCTCTTC | 2 cut(s) | 172, 1428 |
| BspT107I | GGYRCC | 1 cut(s) | 1111 |
| BspTI | CTTAAG | 2 cut(s) | 2456, 3770 |
| BspTNI | GGTCTC | 1 cut(s) | 261 |
| BsrBI | CCGCTC | 3 cut(s) | 165, 289, 676 |
| BsrDI | GCAATG | 2 cut(s) | 990, 1401 |
| BsrGI | TGTACA | 1 cut(s) | 3745 |
| BssECI | CCNNGG | 4 cut(s) | 345, 681, 1265, 2188 |
| BssSI | CACGAG | 4 cut(s) | 119, 548, 1119, 2796 |
| BssT1I | CCWWGG | 2 cut(s) | 345, 2188 |
| Bst2BI | CACGAG | 4 cut(s) | 119, 548, 1119, 2796 |
| Bst2UI | CCWGG | 3 cut(s) | 1266, 1798, 2073 |
| Bst6I | CTCTTC | 8 cut(s) | 40, 172, 330, 1140, 1428, 2697, 3294, 3503 |
| BstAFI | CTTAAG | 2 cut(s) | 2456, 3770 |
| BstAUI | TGTACA | 1 cut(s) | 3745 |
| BstC8I | GCNNGC | 7 cut(s) | 140, 360, 389, 615, 968, 1128, 3120 |
| BstFNI | CGCG | 6 cut(s) | 84, 225, 243, 333, 387, 517 |
| BstH2I | RGCGCY | 1 cut(s) | 1507 |
| BstHHI | GCGC | 6 cut(s) | 294, 333, 697, 1132, 1165, 1506 |
| BstMAI | GTCTC | 5 cut(s) | 261, 992, 1142, 2455, 3581 |
| BstMCI | CGRYCG | 3 cut(s) | 205, 247, 265 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 448, 610, 1132, 2314, 2516 |
| BstNI | CCWGG | 3 cut(s) | 1266, 1798, 2073 |
| BstSCI | CCNGG | 8 cut(s) | 204, 210, 216, 234, 597, 1264, 1796, 2071 |
| BstSFI | CTRYAG | 4 cut(s) | 2475, 3044, 3833, 3869 |
| BstUI | CGCG | 6 cut(s) | 84, 225, 243, 333, 387, 517 |
| BstV2I | GAAGAC | 5 cut(s) | 55, 822, 1946, 1978, 3654 |
| BstX2I | RGATCY | 3 cut(s) | 2524, 2706, 3408 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 946, 961, 1711, 1916 |
| BstYI | RGATCY | 3 cut(s) | 2524, 2706, 3408 |
| BtrI | CACGTC | 1 cut(s) | 1838 |
| BtsIMutI | CAGTG | 2 cut(s) | 1319, 2879 |
| BveI | ACCTGC | 1 cut(s) | 1363 |
| Cac8I | GCNNGC | 7 cut(s) | 140, 360, 389, 615, 968, 1128, 3120 |
| CaiI | CAGNNNCTG | 4 cut(s) | 427, 562, 1001, 3132 |
| CfoI | GCGC | 6 cut(s) | 294, 333, 697, 1132, 1165, 1506 |
| CpoI | CGGWCCG | 1 cut(s) | 382 |
| CseI | GACGC | 1 cut(s) | 2472 |
| Csp6I | GTAC | 9 cut(s) | 535, 888, 1804, 1903, 1923, 2180, 3416, 3746, 3819 |
| CspI | CGGWCCG | 1 cut(s) | 382 |
| CviAII | CATG | 8 cut(s) | 1108, 1486, 1745, 1865, 2027, 2051, 2309, 2786 |
| CviQI | GTAC | 9 cut(s) | 535, 888, 1804, 1903, 1923, 2180, 3416, 3746, 3819 |
| DraI | TTTAAA | 2 cut(s) | 1228, 2614 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1982, 2165 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1982, 2165 |
| EaeI | YGGCCR | 1 cut(s) | 3615 |
| Eam1104I | CTCTTC | 8 cut(s) | 40, 172, 330, 1140, 1428, 2697, 3294, 3503 |
| EarI | CTCTTC | 8 cut(s) | 40, 172, 330, 1140, 1428, 2697, 3294, 3503 |
| Eco130I | CCWWGG | 2 cut(s) | 345, 2188 |
| Eco24I | GRGCYC | 1 cut(s) | 434 |
| Eco31I | GGTCTC | 1 cut(s) | 261 |
| Eco32I | GATATC | 1 cut(s) | 1727 |
| Eco47I | GGWCC | 9 cut(s) | 208, 214, 220, 232, 238, 382, 592, 1091, 1794 |
| Eco57I | CTGAAG | 3 cut(s) | 1107, 2357, 3396 |
| Eco88I | CYCGRG | 2 cut(s) | 351, 680 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1091, 2452 |
| EcoRI | GAATTC | 3 cut(s) | 2745, 2840, 3335 |
| EcoRII | CCWGG | 3 cut(s) | 1264, 1796, 2071 |
| EcoRV | GATATC | 1 cut(s) | 1727 |
| EcoT14I | CCWWGG | 2 cut(s) | 345, 2188 |
| EcoT38I | GRGCYC | 1 cut(s) | 434 |
| ErhI | CCWWGG | 2 cut(s) | 345, 2188 |
| Esp3I | CGTCTC | 1 cut(s) | 2455 |
| FaeI | CATG | 8 cut(s) | 1111, 1489, 1748, 1868, 2030, 2054, 2312, 2789 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2450, 2482, 3450, 3482, 3753, 3785 |
| FaqI | GGGAC | 8 cut(s) | 167, 221, 227, 233, 245, 251, 809, 2153 |
| FatI | CATG | 8 cut(s) | 1107, 1485, 1744, 1864, 2026, 2050, 2308, 2785 |
| FauI | CCCGC | 1 cut(s) | 2232 |
| FbaI | TGATCA | 2 cut(s) | 1575, 2217 |
| FblI | GTMKAC | 1 cut(s) | 3721 |
| FriOI | GRGCYC | 1 cut(s) | 434 |
| FspBI | CTAG | 9 cut(s) | 465, 843, 1053, 2097, 2189, 2235, 2742, 3263, 3672 |
| FspI | TGCGCA | 2 cut(s) | 1131, 1164 |
| GlaI | GCGC | 6 cut(s) | 293, 332, 696, 1131, 1164, 1505 |
| GsaI | CCCAGC | 1 cut(s) | 3072 |
| GsuI | CTGGAG | 5 cut(s) | 305, 797, 820, 1615, 2435 |
| HaeII | RGCGCY | 1 cut(s) | 1507 |
| HapII | CCGG | 6 cut(s) | 205, 211, 217, 235, 585, 598 |
| HgaI | GACGC | 1 cut(s) | 2472 |
| HhaI | GCGC | 6 cut(s) | 294, 333, 697, 1132, 1165, 1506 |
| Hin1II | CATG | 8 cut(s) | 1111, 1489, 1748, 1868, 2030, 2054, 2312, 2789 |
| Hin6I | GCGC | 6 cut(s) | 292, 331, 695, 1130, 1163, 1504 |
| HinP1I | GCGC | 6 cut(s) | 292, 331, 695, 1130, 1163, 1504 |
| HincII | GTYRAC | 4 cut(s) | 1041, 1675, 1965, 3722 |
| HindII | GTYRAC | 4 cut(s) | 1041, 1675, 1965, 3722 |
| HindIII | AAGCTT | 6 cut(s) | 611, 2276, 2725, 2902, 3101, 3682 |
| HpaI | GTTAAC | 1 cut(s) | 1675 |
| HpaII | CCGG | 6 cut(s) | 205, 211, 217, 235, 585, 598 |
| HphI | GGTGA | 4 cut(s) | 631, 1661, 2990, 3613 |
| Hpy166II | GTNNAC | 7 cut(s) | 281, 1041, 1675, 1905, 1965, 3722, 3821 |
| Hpy8I | GTNNAC | 7 cut(s) | 281, 1041, 1675, 1905, 1965, 3722, 3821 |
| Hpy99I | CGWCG | 2 cut(s) | 17, 43 |
| HpyAV | CCTTC | 9 cut(s) | 652, 942, 1082, 1410, 1778, 2348, 2631, 3217, 3557 |
| HpyCH4IV | ACGT | 5 cut(s) | 1837, 1901, 1921, 2767, 2851 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 448, 610, 1132, 2314, 2516 |
| HpySE526I | ACGT | 5 cut(s) | 1837, 1901, 1921, 2767, 2851 |
| Hsp92II | CATG | 8 cut(s) | 1111, 1489, 1748, 1868, 2030, 2054, 2312, 2789 |
| HspAI | GCGC | 6 cut(s) | 292, 331, 695, 1130, 1163, 1504 |
| Ksp22I | TGATCA | 2 cut(s) | 1575, 2217 |
| KspAI | GTTAAC | 1 cut(s) | 1675 |
| LguI | GCTCTTC | 2 cut(s) | 172, 1428 |
| LweI | GCATC | 3 cut(s) | 1381, 1594, 1995 |
| MaeI | CTAG | 9 cut(s) | 465, 843, 1053, 2097, 2189, 2235, 2742, 3263, 3672 |
| MaeII | ACGT | 5 cut(s) | 1837, 1901, 1921, 2767, 2851 |
| MaeIII | GTNAC | 9 cut(s) | 299, 305, 311, 1540, 1732, 2018, 2489, 3128, 3389 |
| MbiI | CCGCTC | 3 cut(s) | 165, 289, 676 |
| MfeI | CAATTG | 4 cut(s) | 1209, 1545, 2588, 2949 |
| MflI | RGATCY | 3 cut(s) | 2524, 2706, 3408 |
| MhlI | GDGCHC | 2 cut(s) | 364, 434 |
| MlyI | GAGTC | 2 cut(s) | 2153, 3524 |
| MmeI | TCCRAC | 5 cut(s) | 124, 225, 3237, 3411, 3644 |
| MslI | CAYNNNNRTG | 2 cut(s) | 944, 1469 |
| MspA1I | CMGCKG | 3 cut(s) | 1556, 2215, 3860 |
| MspCI | CTTAAG | 2 cut(s) | 2456, 3770 |
| MspI | CCGG | 6 cut(s) | 205, 211, 217, 235, 585, 598 |
| MspR9I | CCNGG | 8 cut(s) | 206, 212, 218, 236, 599, 1266, 1798, 2073 |
| MssI | GTTTAAAC | 1 cut(s) | 2614 |
| MunI | CAATTG | 4 cut(s) | 1209, 1545, 2588, 2949 |
| Mva1269I | GAATGC | 2 cut(s) | 532, 2428 |
| MvaI | CCWGG | 3 cut(s) | 1266, 1798, 2073 |
| MvnI | CGCG | 6 cut(s) | 84, 225, 243, 333, 387, 517 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 448, 610, 1132, 2314, 2516 |
| NciI | CCSGG | 5 cut(s) | 206, 212, 218, 236, 599 |
| NlaIII | CATG | 8 cut(s) | 1111, 1489, 1748, 1868, 2030, 2054, 2312, 2789 |
| NlaIV | GGNNCC | 7 cut(s) | 209, 215, 221, 233, 239, 1113, 3073 |
| NmeAIII | GCCGAG | 1 cut(s) | 3643 |
| NmuCI | GTSAC | 5 cut(s) | 299, 305, 311, 1732, 3389 |
| NsbI | TGCGCA | 2 cut(s) | 1131, 1164 |
| PciSI | GCTCTTC | 2 cut(s) | 172, 1428 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 47, 1918, 1927 |
| PctI | GAATGC | 2 cut(s) | 532, 2428 |
| Ple19I | CGATCG | 1 cut(s) | 265 |
| PleI | GAGTC | 2 cut(s) | 2153, 3523 |
| PmeI | GTTTAAAC | 1 cut(s) | 2614 |
| PpsI | GAGTC | 2 cut(s) | 2153, 3523 |
| PpuMI | RGGWCCY | 1 cut(s) | 1091 |
| PshBI | ATTAAT | 1 cut(s) | 1872 |
| PsiI | TTATAA | 1 cut(s) | 924 |
| Psp1406I | AACGTT | 1 cut(s) | 2767 |
| Psp5II | RGGWCCY | 1 cut(s) | 1091 |
| Psp6I | CCWGG | 3 cut(s) | 1264, 1796, 2071 |
| PspFI | CCCAGC | 1 cut(s) | 3068 |
| PspGI | CCWGG | 3 cut(s) | 1264, 1796, 2071 |
| PspN4I | GGNNCC | 7 cut(s) | 209, 215, 221, 233, 239, 1113, 3073 |
| PspPPI | RGGWCCY | 1 cut(s) | 1091 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2947, 2979 |
| PstI | CTGCAG | 3 cut(s) | 3048, 3837, 3873 |
| PstNI | CAGNNNCTG | 4 cut(s) | 427, 562, 1001, 3132 |
| PsuI | RGATCY | 3 cut(s) | 2524, 2706, 3408 |
| PvuI | CGATCG | 1 cut(s) | 265 |
| PvuII | CAGCTG | 3 cut(s) | 1556, 2215, 3860 |
| RsaI | GTAC | 9 cut(s) | 536, 889, 1805, 1904, 1924, 2181, 3417, 3747, 3820 |
| RsaNI | GTAC | 9 cut(s) | 535, 888, 1804, 1903, 1923, 2180, 3416, 3746, 3819 |
| RseI | CAYNNNNRTG | 2 cut(s) | 944, 1469 |
| Rsr2I | CGGWCCG | 1 cut(s) | 382 |
| RsrII | CGGWCCG | 1 cut(s) | 382 |
| SalI | GTCGAC | 1 cut(s) | 3720 |
| SapI | GCTCTTC | 2 cut(s) | 172, 1428 |
| SchI | GAGTC | 2 cut(s) | 2153, 3524 |
| ScrFI | CCNGG | 8 cut(s) | 206, 212, 218, 236, 599, 1266, 1798, 2073 |
| SduI | GDGCHC | 2 cut(s) | 364, 434 |
| SfaNI | GCATC | 3 cut(s) | 1381, 1594, 1995 |
| SfcI | CTRYAG | 4 cut(s) | 2475, 3044, 3833, 3869 |
| SinI | GGWCC | 9 cut(s) | 208, 214, 220, 232, 238, 382, 592, 1091, 1794 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 944, 1469 |
| SspI | AATATT | 1 cut(s) | 3501 |
| SspMI | CTAG | 9 cut(s) | 465, 843, 1053, 2097, 2189, 2235, 2742, 3263, 3672 |
| StyD4I | CCNGG | 8 cut(s) | 204, 210, 216, 234, 597, 1264, 1796, 2071 |
| StyI | CCWWGG | 2 cut(s) | 345, 2188 |
| TaiI | ACGT | 5 cut(s) | 1840, 1904, 1924, 2770, 2854 |
| TaqI | TCGA | 6 cut(s) | 15, 265, 364, 489, 3285, 3721 |
| TaqII | GACCGA | 1 cut(s) | 261 |
| TatI | WGTACW | 4 cut(s) | 2179, 3415, 3745, 3818 |
| TauI | GCSGC | 8 cut(s) | 29, 49, 108, 138, 292, 679, 695, 1372 |
| TscAI | CASTG | 2 cut(s) | 1319, 2879 |
| TseFI | GTSAC | 5 cut(s) | 299, 305, 311, 1732, 3389 |
| Tsp45I | GTSAC | 5 cut(s) | 299, 305, 311, 1732, 3389 |
| TspGWI | ACGGA | 3 cut(s) | 169, 905, 1838 |
| TspRI | CASTG | 2 cut(s) | 1319, 2879 |
| Vha464I | CTTAAG | 2 cut(s) | 2456, 3770 |
| VpaK11BI | GGWCC | 9 cut(s) | 208, 214, 220, 232, 238, 382, 592, 1091, 1794 |
| VspI | ATTAAT | 1 cut(s) | 1872 |
| XapI | RAATTY | 7 cut(s) | 2286, 2745, 2840, 3142, 3335, 3624, 3690 |
| XmaJI | CCTAGG | 1 cut(s) | 2188 |
| XmiI | GTMKAC | 1 cut(s) | 3721 |
| XspI | CTAG | 9 cut(s) | 465, 843, 1053, 2097, 2189, 2235, 2742, 3263, 3672 |