Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002136

Physical Location & Seq

Genomic Coordinates Forward (+)

35375470 .. 35376363

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG339000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAGGAAGTGGAAGCCCGCACACAAGACAGAGAACCTTATCCAAAATGCAAAGGACAAGGATAGCTGCATAGAAAATCTCCACAAAGATATCTCACAGCTGGAACAAGAGTGCATAAGAAGAGAAATGGAAGCGACAATTCTTGCAAGGTTTGATGCAGAGAAATGTGTTGGACGAGATAAAGAGAGGCTTTTCAAGGTTATCAGTGAGAAAGATCAGAACATACAAAGTCTTGAGGTATATGCAGTATCATTAGAGCAAGACTTGACTACTGTTTTAACTTCCTCCTTTGCTGAAGTTGTAGAAAATCTGGTTTCAATTGATGTGCTTACTGAAGCTTTGAAGAAGGCCAAGCATATGTCAGAGCTACAGGTTGAAGACAGGAACAAAAGAATTGTTGATTTGGAGAAAGAAGTAACTGGTTCGCGCCAAAGATTGATACATCAGGAGGAAGCCTTGTTCCATCTTAAACAACAGGTAGAGGAACTTGAAGCATTATTGGAAGCCAAGAAACTGGAAACCAATAAGGTGATGGTTGAACAGAGGATTTCGGAAGGCATAGTCAAGCAGCTTGAATATGAAAAAGCTATCCTCCTTCAAGACACCACAAAGCTATCAAAAGAAAGAGGGCATATTTTTGTTCATCTTGAAGAATTTTGTGATCGTATCGGTGAGCTCACTTATGAGGATACAAGGATGATGGATGTTTTAGAAACAATGCTGCAAGGATTTAAGGAAGAGGTTGGACCACCAGTGGGTTTAACAGTCGATAATTTGCTCTATGATTCTACCCAAGAGAATGAAAGCACTACGATTTCTGCGTCAGCAAGAAAAATTGAAGCTAGTGCTGGAAGATTACCACTGAAAGAGATGAATCATCGGCAGCTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

34.33

Weight (kDa)

5.21

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38062
fragaria_vesca	FvH4_1g19631 FvH4_1g19631 FvH4_1g19631 FvH4_2g11711 FvH4_2g11711 FvH4_2g11711
malus_domestica	MD01G1039400.v1.1 MD05G1047500.v1.1 MD10G1054400.v1.1
prunus_persica	Prupe.6G201700_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1
pyrus_communis	pycom01g06710 pycom05g03950
rosa_chinensis	RchiOBHm_Chr2g0111201 RchiOBHm_Chr6g0261381 RchiOBHm_Chr6g0271001
rosa_laevigata	RLG00000002078 RLG00000013754 RLG00000017873
rosa_multiflora	Rmu_co8194982.1_g000001 Rmu_co8518461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132630 Rroxscaffold_3G00237190 Rroxscaffold_7G00197440
rosa_rugosa	Rorug02G0171500 Rorug06G0057600 Rorug07G0206900 Rorug07G0206900
rosa_samantha	Rh2AG224600 Rh2BG236400 Rh2CG227600 Rh2DG232200 Rh6AG177300 Rh6BG180700 Rh6CG176700 Rh6DG168900 Rh7BG338900 Rh7BG339000
rosa_wichuraiana	Rw2G017340 Rw6G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	427
AciI	CCGC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	2 cut(s)	315, 354
AfiI	CCNNNNNNNGG	1 cut(s)	755
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
Alw21I	GWGCWC	1 cut(s)	678
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	4 cut(s)	66, 568, 721, 883
ApoI	RAATTY	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	541, 683
AvaII	GGWCC	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	678
BbvI	GCAGC	3 cut(s)	53, 580, 708
BccI	CCATC	3 cut(s)	471, 526, 694
BciVI	GTATCC	1 cut(s)	682
BfaI	CTAG	1 cut(s)	843
BfmI	CTRYAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	4 cut(s)	67, 569, 722, 884
BlsI	GCNGC	4 cut(s)	68, 570, 723, 885
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	1 cut(s)	746
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse1I	ACTGG	3 cut(s)	424, 519, 752
BseGI	GGATG	2 cut(s)	702, 709
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseNI	ACTGG	3 cut(s)	424, 519, 752
BseXI	GCAGC	3 cut(s)	53, 580, 708
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	678
BslI	CCNNNNNNNGG	1 cut(s)	755
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	2 cut(s)	214, 661
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	350
BspFNI	CGCG	1 cut(s)	427
BsrI	ACTGG	3 cut(s)	424, 519, 752
BssMI	GATC	2 cut(s)	214, 661
Bst4CI	ACNGT	2 cut(s)	274, 766
Bst6I	CTCTTC	2 cut(s)	115, 732
BstC8I	GCNNGC	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	702, 709
BstFNI	CGCG	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	217, 664
BstMBI	GATC	2 cut(s)	214, 661
BstSFI	CTRYAG	1 cut(s)	368
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	3 cut(s)	53, 580, 708
BstV2I	GAAGAC	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	514
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	702, 709
BtsIMutI	CAGTG	3 cut(s)	211, 759, 860
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	746
CseI	GACGC	1 cut(s)	810
DpnI	GATC	2 cut(s)	216, 663
DpnII	GATC	2 cut(s)	214, 661
Eam1104I	CTCTTC	2 cut(s)	115, 732
EarI	CTCTTC	2 cut(s)	115, 732
Ecl136II	GAGCTC	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	678
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	746
Eco53kI	GAGCTC	1 cut(s)	676
Eco57I	CTGAAG	2 cut(s)	315, 354
EcoICRI	GAGCTC	1 cut(s)	676
EcoRV	GATATC	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	678
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FauI	CCCGC	1 cut(s)	25
FauNDI	CATATG	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	67, 569, 722, 884
FokI	GGATG	2 cut(s)	709, 716
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	4 cut(s)	67, 569, 722, 884
FspBI	CTAG	1 cut(s)	843
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	4 cut(s)	67, 569, 722, 884
HaeIII	GGCC	1 cut(s)	350
HgaI	GACGC	1 cut(s)	810
HhaI	GCGC	1 cut(s)	429
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	2 cut(s)	785, 874
HphI	GGTGA	2 cut(s)	541, 683
Hpy188I	TCNGA	3 cut(s)	219, 364, 553
Hpy188III	TCNNGA	4 cut(s)	233, 446, 599, 647
HpyAV	CCTTC	3 cut(s)	340, 548, 605
HpyCH4III	ACNGT	2 cut(s)	274, 766
HpyCH4V	TGCA	7 cut(s)	50, 69, 114, 146, 158, 245, 724
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	214, 661
Lsp1109I	GCAGC	3 cut(s)	53, 580, 708
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	843
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	216, 663
MboI	GATC	2 cut(s)	214, 661
MboII	GAAGA	6 cut(s)	132, 355, 389, 662, 749, 864
MfeI	CAATTG	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	6 cut(s)	138, 318, 393, 653, 772, 834
MmeI	TCCRAC	2 cut(s)	151, 724
MseI	TTAA	4 cut(s)	278, 468, 732, 761
MspA1I	CMGCKG	1 cut(s)	100
MunI	CAATTG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	2 cut(s)	214, 661
PcsI	WCGNNNNNNNCGW	1 cut(s)	818
PfeI	GAWTC	2 cut(s)	785, 874
PkrI	GCNGC	4 cut(s)	68, 570, 723, 885
Psp124BI	GAGCTC	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	746
PvuII	CAGCTG	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	678
SaqAI	TTAA	4 cut(s)	278, 468, 732, 761
SatI	GCNGC	4 cut(s)	67, 569, 722, 884
Sau3AI	GATC	2 cut(s)	214, 661
Sau96I	GGNCC	1 cut(s)	746
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	6 cut(s)	138, 318, 393, 653, 772, 834
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	843
SstI	GAGCTC	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	274, 766
TaqI	TCGA	1 cut(s)	768
TasI	AATT	6 cut(s)	138, 318, 393, 653, 772, 834
TfiI	GAWTC	2 cut(s)	785, 874
Tru1I	TTAA	4 cut(s)	278, 468, 732, 761
Tru9I	TTAA	4 cut(s)	278, 468, 732, 761
TscAI	CASTG	3 cut(s)	211, 759, 867
TseI	GCWGC	4 cut(s)	66, 568, 721, 883
TspDTI	ATGAA	4 cut(s)	594, 632, 816, 887
TspRI	CASTG	3 cut(s)	211, 759, 867
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	1 cut(s)	653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XspI	CTAG	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.