Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002136

Physical Location & Seq

Genomic Coordinates Reverse (-)

24802401 .. 24809737

Gene Structure 7337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGGCAACCAGATTCCCAGTCTGCGTCTCCCCAGTCCCCAGATTTGTACTGCACCTAGGAAATCTTGAAGCTGATCGTGAGCTGAAGCTGACAAAACTGGAAGGAGAGAATAAAGAATTGGCATTTGCGTTTGATGAAGTTTCAGAAAAAAACAAAGAACTGGAGCAGAATGCTTGTGCCAGTAGTCGGGAGATTGAGGGCCTTAAGAGAGGCTTATTGACTACAGAAAGCAAGTGTTACGAGGCAGAGCAAAAGGCCCAAGCAGCCAAAGATCTGAGGCAGAGAGAAGATATAGTAATGAACTTAGAGGAGGAGAATAGAAATGCTCAAGATCAATTGAAATGGAAGAAAGAGCAGTTTAAACATCTTGAAGAAGCACATAGAAGGCTACAAGATCAGTTTAAGTTGAATAAAGATGAGTGGGAGAGGGGCAAATCAGCCCTGCTTGAAGAGATCTCTTTGTTGCAGACAAGCTTGGATTCCAAAACTAGAATTCTTAAAGATTGCCTACAAGAAAGGTCAAAGTTTGAAAGCTTAACTGTTCAAAGGGATGAAGAGATTGCGAAGCTAAGAAACTCAATTGGAACAAGAGATACATCAACAAAAGAAATGGAAATCAGAATTGCTCACCTTGAGCAAGAGAATCAGGAATTAAGAGAATCTCTTAAAGAGCTGCAGGAATCTCAGATCAGAAATGCTGGGGCCACTTCACTCACAAAGCTGCGGAACAAGCTTAGGGGCTTGGAGCAGGCACACAGTAACTGTTCCAGAAATTTGAAAGCACAAGAATCTGAATGGAGTTCCCAAATAGAGAAGATGAAAGGAGATATGAATGGGTATAACTCTGAGTTGAAGGGTAAAGAGAAACAAATGCAGGAAACTCAGTTGGAGCTAGAGAGCTGGGAGAAACGAGATATTTCTGAGACTTTAGAAAAGGTGAATCTTGAGTTGGCCGAGAAAATTTGTGAAATAAAAAATCAAGAAAAATGTCGACAAATAGAGGATTCAATCCCTGTACAAACAAAGAATGAAGAAATCCTTAAGAATGAGAAAGAAAGCCTCATCTCCATTATCAAAGAGAAAAACAGTACACTTGAAGTTCTGCAGCAGCAGATAGTCCTATTAGCAGCTGCAGTAGCAGCAAAGAATGAGGAAGTGGAAGCCTGCACACAAGACAAAGAGAACCTTATCCAAAATGCAAAGGACAAGGATAGCTGCATAGAAAATCTCCACAAAGATATCTCACAGCTGGAACAAGAGTGCATAAGAAGAGAAATGGAAGCGACAATTCTTGCAAGGTTTGATGCAGAGAAATGTGTTGGACGAGATAAAGAGAGGCTTTTCAAGGTTATCAGTGAGAAAGATCAGAACATACAAAGTCTTGAGGTATATGCAGTATCATTAGAGCAAGACTTGACTACTGTTTTAACTTCCTCCTTTGCTGAAGTTGTAGAAAATCTGGTTTCAATTGATGTGCTTACTGAAGCGTTGAAGAAGGCCAAGCATATGTCAGAGCTACAGGTTGAAGACAGGAACAAAAGAATTGTTGATTTGGAGAAAGAAGTAACTGGTTCGCGCGAAAGATTGATACATCAGGAGGAAGCCTTGTTCCATTTTAAACAACAGGTAGAGGAACTTGAAGCATTATTGGAAGCCAAGAAACTGGAAACCAATAAGGTGATGGTTGAACAGAGGATTTCGGAAGGCATAGTCAAGCAGCTTGAATATGAAAAAGCTATCCTCCTTCAAGACACCACAAAGCTATCAAAAGAAAGAGGGCATATTTTTGTTCATCTTGAAGAATTTTGTGATCGTATCGGTGAGCTCACTTATGAGGATACAAGGATGATGGATGTTTTAGAAACAATGCTGCAAGGATTTAAGGAAGAGGTTGGACCACCAGTGGGTTTAACAGTCGATAATTTGCTCTATGATTCTACCCAAGAGAATGAAAGCACTACGATTTCTGCGTCAGCAAGAAAAATTGAAGCTAGTGCTGGAAGATTACCACTGAAAGAGATGAATCATCGGCAGCTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

680

Amino Acids

78.61

Weight (kDa)

5.13

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38062
fragaria_vesca	FvH4_1g19631 FvH4_1g19631 FvH4_1g19631 FvH4_2g11711 FvH4_2g11711 FvH4_2g11711
malus_domestica	MD01G1039400.v1.1 MD05G1047500.v1.1 MD10G1054400.v1.1
prunus_persica	Prupe.6G201700_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1
pyrus_communis	pycom01g06710 pycom05g03950
rosa_chinensis	RchiOBHm_Chr2g0111201 RchiOBHm_Chr6g0261381 RchiOBHm_Chr6g0271001
rosa_laevigata	RLG00000002078 RLG00000013754 RLG00000017873
rosa_multiflora	Rmu_co8194982.1_g000001 Rmu_co8518461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132630 Rroxscaffold_3G00237190 Rroxscaffold_7G00197440
rosa_rugosa	Rorug02G0171500 Rorug06G0057600 Rorug07G0206900 Rorug07G0206900
rosa_samantha	Rh2AG224600 Rh2BG236400 Rh2CG227600 Rh2DG232200 Rh6AG177300 Rh6BG180700 Rh6CG176700 Rh6DG168900 Rh7BG338900 Rh7BG339000
rosa_wichuraiana	Rw2G017340 Rw6G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	991
AccII	CGCG	2 cut(s)	1576, 1578
AciI	CCGC	1 cut(s)	724
AcoI	YGGCCR	1 cut(s)	951
AcsI	RAATTY	4 cut(s)	492, 772, 960, 1802
AcuI	CTGAAG	3 cut(s)	104, 1464, 1503
AfaI	GTAC	3 cut(s)	48, 1017, 1090
AfiI	CCNNNNNNNGG	2 cut(s)	186, 1904
AflII	CTTAAG	2 cut(s)	203, 1040
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 932, 964
AloI	GAACNNNNNNTCC	2 cut(s)	1592, 1624
Alw21I	GWGCWC	1 cut(s)	1827
Alw26I	GTCTC	2 cut(s)	31, 917
AlwNI	CAGNNNCTG	1 cut(s)	762
AoxI	GGCC	5 cut(s)	199, 255, 702, 951, 1497
ApoI	RAATTY	4 cut(s)	492, 772, 960, 1802
AspA2I	CCTAGG	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	1578
AspS9I	GGNCC	4 cut(s)	199, 256, 702, 1895
AsuHPI	GGTGA	4 cut(s)	620, 949, 1690, 1832
AvaII	GGWCC	1 cut(s)	1895
AvrII	CCTAGG	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	1827
BbsI	GAAGAC	1 cut(s)	1533
Bbv12I	GWGCWC	1 cut(s)	1827
BccI	CCATC	2 cut(s)	1675, 1843
BciVI	GTATCC	1 cut(s)	1831
BcoDI	GTCTC	2 cut(s)	31, 917
BfaI	CTAG	4 cut(s)	56, 489, 893, 1992
BfmI	CTRYAG	5 cut(s)	222, 674, 1103, 1131, 1517
BfrI	CTTAAG	2 cut(s)	203, 1040
BfuI	GTATCC	1 cut(s)	1831
BglII	AGATCT	2 cut(s)	271, 453
BlnI	CCTAGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	1895
BmgT120I	GGNCC	4 cut(s)	199, 256, 702, 1895
BmiI	GGNNCC	1 cut(s)	703
BmrI	ACTGGG	2 cut(s)	11, 26
BmsI	GCATC	1 cut(s)	1294
BmuI	ACTGGG	2 cut(s)	11, 26
BpiI	GAAGAC	1 cut(s)	1533
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	4 cut(s)	312, 653, 965, 1403
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 1904
Bse1I	ACTGG	8 cut(s)	17, 32, 102, 165, 180, 1573, 1668, 1901
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	3 cut(s)	556, 1851, 1858
BseLI	CCNNNNNNNGG	2 cut(s)	186, 1904
BseMII	CTCAG	5 cut(s)	266, 698, 837, 896, 912
BseNI	ACTGG	8 cut(s)	17, 32, 102, 165, 180, 1573, 1668, 1901
BseRI	GAGGAG	2 cut(s)	323, 326
BseYI	CCCAGC	2 cut(s)	698, 900
BsgI	GTGCAG	2 cut(s)	35, 1150
Bsh1236I	CGCG	2 cut(s)	1576, 1578
BshFI	GGCC	5 cut(s)	201, 257, 704, 953, 1499
BsiHKAI	GWGCWC	1 cut(s)	1827
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	186, 1904
BsmAI	GTCTC	2 cut(s)	31, 917
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	5 cut(s)	201, 257, 704, 953, 1499
Bsp1286I	GDGCHC	1 cut(s)	1827
Bsp1407I	TGTACA	1 cut(s)	1015
Bsp143I	GATC	8 cut(s)	73, 271, 331, 394, 453, 687, 1363, 1810
BspACI	CCGC	1 cut(s)	724
BspANI	GGCC	5 cut(s)	201, 257, 704, 953, 1499
BspCNI	CTCAG	5 cut(s)	267, 697, 838, 895, 913
BspFNI	CGCG	2 cut(s)	1576, 1578
BspLI	GGNNCC	1 cut(s)	703
BspMAI	CTGCAG	3 cut(s)	678, 1107, 1135
BspTI	CTTAAG	2 cut(s)	203, 1040
BsrGI	TGTACA	1 cut(s)	1015
BsrI	ACTGG	8 cut(s)	17, 32, 102, 165, 180, 1573, 1668, 1901
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	8 cut(s)	73, 271, 331, 394, 453, 687, 1363, 1810
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	6 cut(s)	541, 758, 764, 1088, 1423, 1915
Bst6I	CTCTTC	4 cut(s)	444, 549, 1264, 1881
BstAFI	CTTAAG	2 cut(s)	203, 1040
BstAUI	TGTACA	1 cut(s)	1015
BstC8I	GCNNGC	2 cut(s)	750, 1165
BstDEI	CTNAG	8 cut(s)	275, 304, 569, 684, 734, 846, 882, 921
BstF5I	GGATG	3 cut(s)	556, 1851, 1858
BstFNI	CGCG	2 cut(s)	1576, 1578
BstHHI	GCGC	1 cut(s)	1578
BstKTI	GATC	8 cut(s)	76, 274, 334, 397, 456, 690, 1366, 1813
BstMAI	GTCTC	2 cut(s)	31, 917
BstMBI	GATC	8 cut(s)	73, 271, 331, 394, 453, 687, 1363, 1810
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 730, 1136, 1139
BstSFI	CTRYAG	5 cut(s)	222, 674, 1103, 1131, 1517
BstUI	CGCG	2 cut(s)	1576, 1578
BstV2I	GAAGAC	1 cut(s)	1533
BstX2I	RGATCY	2 cut(s)	271, 453
BstXI	CCANNNNNNTGG	1 cut(s)	1663
BstYI	RGATCY	2 cut(s)	271, 453
BsuI	GTATCC	1 cut(s)	1831
BsuRI	GGCC	5 cut(s)	201, 257, 704, 953, 1499
BtsCI	GGATG	3 cut(s)	556, 1851, 1858
BtsIMutI	CAGTG	3 cut(s)	1360, 1908, 2009
Cac8I	GCNNGC	2 cut(s)	750, 1165
CaiI	CAGNNNCTG	1 cut(s)	762
CfoI	GCGC	1 cut(s)	1578
Cfr13I	GGNCC	4 cut(s)	199, 256, 702, 1895
CseI	GACGC	2 cut(s)	13, 1959
Csp6I	GTAC	3 cut(s)	47, 1016, 1089
CviQI	GTAC	3 cut(s)	47, 1016, 1089
DdeI	CTNAG	8 cut(s)	275, 304, 569, 684, 734, 846, 882, 921
DpnI	GATC	8 cut(s)	75, 273, 333, 396, 455, 689, 1365, 1812
DpnII	GATC	8 cut(s)	73, 271, 331, 394, 453, 687, 1363, 1810
DraI	TTTAAA	2 cut(s)	361, 1618
EaeI	YGGCCR	1 cut(s)	951
Eam1104I	CTCTTC	4 cut(s)	444, 549, 1264, 1881
EarI	CTCTTC	4 cut(s)	444, 549, 1264, 1881
Ecl136II	GAGCTC	1 cut(s)	1825
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	1827
Eco32I	GATATC	1 cut(s)	1240
Eco47I	GGWCC	1 cut(s)	1895
Eco53kI	GAGCTC	1 cut(s)	1825
Eco57I	CTGAAG	3 cut(s)	104, 1464, 1503
EcoICRI	GAGCTC	1 cut(s)	1825
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	492
EcoRV	GATATC	1 cut(s)	1240
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	1827
ErhI	CCWWGG	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	31
FalI	AAGNNNNNCTT	8 cut(s)	197, 229, 1023, 1055, 1170, 1202, 1323, 1355
FaqI	GGGAC	1 cut(s)	20
FauNDI	CATATG	1 cut(s)	1506
FblI	GTMKAC	1 cut(s)	991
FokI	GGATG	3 cut(s)	563, 1858, 1865
FriOI	GRGCYC	1 cut(s)	1827
FspBI	CTAG	4 cut(s)	56, 489, 893, 1992
GlaI	GCGC	1 cut(s)	1577
GsaI	CCCAGC	2 cut(s)	702, 904
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	5 cut(s)	201, 257, 704, 953, 1499
HgaI	GACGC	2 cut(s)	13, 1959
HhaI	GCGC	1 cut(s)	1578
Hin6I	GCGC	1 cut(s)	1576
HinP1I	GCGC	1 cut(s)	1576
HincII	GTYRAC	1 cut(s)	992
HindII	GTYRAC	1 cut(s)	992
HindIII	AAGCTT	3 cut(s)	472, 532, 731
HphI	GGTGA	4 cut(s)	620, 949, 1690, 1832
Hpy166II	GTNNAC	2 cut(s)	992, 1091
Hpy8I	GTNNAC	2 cut(s)	992, 1091
HpyAV	CCTTC	6 cut(s)	95, 378, 847, 1489, 1697, 1754
HpyCH4III	ACNGT	6 cut(s)	541, 758, 764, 1088, 1423, 1915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 730, 1136, 1139
HpyF3I	CTNAG	8 cut(s)	275, 304, 569, 684, 734, 846, 882, 921
HspAI	GCGC	1 cut(s)	1576
Kzo9I	GATC	8 cut(s)	73, 271, 331, 394, 453, 687, 1363, 1810
LmnI	GCTCC	3 cut(s)	163, 745, 889
LweI	GCATC	1 cut(s)	1294
MaeI	CTAG	4 cut(s)	56, 489, 893, 1992
MaeIII	GTNAC	3 cut(s)	236, 758, 1564
MalI	GATC	8 cut(s)	75, 273, 333, 396, 455, 689, 1365, 1812
MboI	GATC	8 cut(s)	73, 271, 331, 394, 453, 687, 1363, 1810
MfeI	CAATTG	3 cut(s)	335, 579, 1467
MflI	RGATCY	2 cut(s)	271, 453
MhlI	GDGCHC	1 cut(s)	1827
MmeI	TCCRAC	3 cut(s)	867, 1300, 1873
MspA1I	CMGCKG	2 cut(s)	1130, 1249
MspCI	CTTAAG	2 cut(s)	203, 1040
MssI	GTTTAAAC	1 cut(s)	361
MunI	CAATTG	3 cut(s)	335, 579, 1467
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	2 cut(s)	1576, 1578
MwoI	GCNNNNNNNGC	4 cut(s)	263, 730, 1136, 1139
NdeI	CATATG	1 cut(s)	1506
NdeII	GATC	8 cut(s)	73, 271, 331, 394, 453, 687, 1363, 1810
NlaIV	GGNNCC	1 cut(s)	703
NmeAIII	GCCGAG	1 cut(s)	979
PcsI	WCGNNNNNNNCGW	1 cut(s)	1967
PctI	GAATGC	1 cut(s)	175
PmeI	GTTTAAAC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	1827
PspFI	CCCAGC	2 cut(s)	698, 900
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	4 cut(s)	199, 256, 702, 1895
PsrI	GAACNNNNNNTAC	2 cut(s)	577, 609
PstI	CTGCAG	3 cut(s)	678, 1107, 1135
PstNI	CAGNNNCTG	1 cut(s)	762
PsuI	RGATCY	2 cut(s)	271, 453
PvuII	CAGCTG	2 cut(s)	1130, 1249
RsaI	GTAC	3 cut(s)	48, 1017, 1090
RsaNI	GTAC	3 cut(s)	47, 1016, 1089
SacI	GAGCTC	1 cut(s)	1827
SalI	GTCGAC	1 cut(s)	990
Sau3AI	GATC	8 cut(s)	73, 271, 331, 394, 453, 687, 1363, 1810
Sau96I	GGNCC	4 cut(s)	199, 256, 702, 1895
SduI	GDGCHC	1 cut(s)	1827
SfaNI	GCATC	1 cut(s)	1294
SfcI	CTRYAG	5 cut(s)	222, 674, 1103, 1131, 1517
SinI	GGWCC	1 cut(s)	1895
SmlI	CTYRAG	6 cut(s)	203, 327, 632, 944, 1040, 1382
SmoI	CTYRAG	6 cut(s)	203, 327, 632, 944, 1040, 1382
SsiI	CCGC	1 cut(s)	724
SspMI	CTAG	4 cut(s)	56, 489, 893, 1992
SstI	GAGCTC	1 cut(s)	1827
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	6 cut(s)	541, 758, 764, 1088, 1423, 1915
TaqI	TCGA	2 cut(s)	991, 1917
TatI	WGTACW	3 cut(s)	46, 1015, 1088
TscAI	CASTG	3 cut(s)	1360, 1908, 2016
TspRI	CASTG	3 cut(s)	1360, 1908, 2016
Vha464I	CTTAAG	2 cut(s)	203, 1040
VpaK11BI	GGWCC	1 cut(s)	1895
XapI	RAATTY	4 cut(s)	492, 772, 960, 1802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1678
XmaJI	CCTAGG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	991
XspI	CTAG	4 cut(s)	56, 489, 893, 1992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.