Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8194982.1

Orthogroup ID

OG0002136

Physical Location & Seq

Genomic Coordinates Forward (+)

43 .. 704

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8194982.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 662 bp

atgacaggtgatgtgaaaagctatatttccaagctagggtgtaaagatgcagcaataaatgagctgaagatggaaatggagcagatgcacagagactatacaattaatagggaaaaagagactgaatggagctcccaactagagaagatgacaggtatgttgaatgtttttaagtctgagctagagtgtaaagatgcagcaataaatgagctcaagatggagttggaagcttgtcactctctaactgtgcagctcaagttgcaaaacgaggagctttctgtcatgttattggtgttgaagcttggaatctctgaggctcagttgaagatttcaaatgagcattctgaaatggttctgcttgacaaagagaaagaagagtatatatctcttttgatgcagcaagtggagatgaagaatgctgctctggttattgcacaggcaggtatcgaagaagaacgtgagaaggctgcatttttatctaggaggattgaagctttggatctcattgagaaagaacaacttctaatgcaggaagaacttgacaggtacaagggaatgctggaggactcatccaagcatgaactttgcttgaaacagcaacttttgcagattgaaagtgttctagaaagagaacgtagagaagttaatgatgccttagagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

25.52

Weight (kDa)

4.8

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38062
fragaria_vesca	FvH4_1g19631 FvH4_1g19631 FvH4_1g19631 FvH4_2g11711 FvH4_2g11711 FvH4_2g11711
malus_domestica	MD01G1039400.v1.1 MD05G1047500.v1.1 MD10G1054400.v1.1
prunus_persica	Prupe.6G201700_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1
pyrus_communis	pycom01g06710 pycom05g03950
rosa_chinensis	RchiOBHm_Chr2g0111201 RchiOBHm_Chr6g0261381 RchiOBHm_Chr6g0271001
rosa_laevigata	RLG00000002078 RLG00000013754 RLG00000017873
rosa_multiflora	Rmu_co8194982.1_g000001 Rmu_co8518461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132630 Rroxscaffold_3G00237190 Rroxscaffold_7G00197440
rosa_rugosa	Rorug02G0171500 Rorug06G0057600 Rorug07G0206900 Rorug07G0206900
rosa_samantha	Rh2AG224600 Rh2BG236400 Rh2CG227600 Rh2DG232200 Rh6AG177300 Rh6BG180700 Rh6CG176700 Rh6DG168900 Rh7BG338900 Rh7BG339000
rosa_wichuraiana	Rw2G017340 Rw6G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	431
AclWI	GGATC	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	7 cut(s)	163, 298, 325, 333, 491, 592, 614
Alw21I	GWGCWC	2 cut(s)	134, 213
Alw26I	GTCTC	2 cut(s)	87, 113
AlwI	GGATC	1 cut(s)	507
ApeKI	GCWGC	6 cut(s)	50, 197, 250, 397, 419, 467
AseI	ATTAAT	1 cut(s)	105
Asp700I	GAANNNNTTC	3 cut(s)	351, 519, 618
AsuHPI	GGTGA	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	134, 213
Bbv12I	GWGCWC	2 cut(s)	134, 213
BbvI	GCAGC	6 cut(s)	62, 209, 262, 406, 409, 454
BccI	CCATC	2 cut(s)	64, 211
BcoDI	GTCTC	2 cut(s)	87, 113
BfaI	CTAG	5 cut(s)	35, 140, 182, 480, 623
BfuAI	ACCTGC	1 cut(s)	431
BisI	GCNGC	6 cut(s)	51, 198, 251, 398, 420, 468
BlsI	GCNGC	6 cut(s)	52, 199, 252, 399, 421, 469
BmsI	GCATC	5 cut(s)	37, 75, 184, 384, 640
BpmI	CTGGAG	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	197, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	569
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	168, 303, 332
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	6 cut(s)	62, 209, 262, 406, 409, 454
BsgI	GTGCAG	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	134, 213
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	87, 113
BsmI	GAATGC	3 cut(s)	340, 421, 561
Bsp1286I	GDGCHC	2 cut(s)	134, 213
Bsp143I	GATC	1 cut(s)	499
BspCNI	CTCAG	3 cut(s)	169, 304, 331
BspMI	ACCTGC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	507
BssMI	GATC	1 cut(s)	499
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstDEI	CTNAG	4 cut(s)	177, 312, 318, 655
BstF5I	GGATG	1 cut(s)	569
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	2 cut(s)	87, 113
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 604
BstV1I	GCAGC	6 cut(s)	62, 209, 262, 406, 409, 454
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	569
BveI	ACCTGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	2 cut(s)	283, 578
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	4 cut(s)	177, 312, 318, 655
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Ecl136II	GAGCTC	2 cut(s)	132, 211
Eco24I	GRGCYC	2 cut(s)	134, 213
Eco53kI	GAGCTC	2 cut(s)	132, 211
Eco57I	CTGAAG	1 cut(s)	86
EcoICRI	GAGCTC	2 cut(s)	132, 211
EcoT38I	GRGCYC	2 cut(s)	134, 213
FaeI	CATG	2 cut(s)	286, 581
FaiI	YATR	7 cut(s)	24, 99, 158, 284, 381, 383, 579
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FatI	CATG	2 cut(s)	282, 577
Fnu4HI	GCNGC	6 cut(s)	51, 198, 251, 398, 420, 468
FokI	GGATG	1 cut(s)	556
FriOI	GRGCYC	2 cut(s)	134, 213
Fsp4HI	GCNGC	6 cut(s)	51, 198, 251, 398, 420, 468
FspBI	CTAG	5 cut(s)	35, 140, 182, 480, 623
GluI	GCNGC	6 cut(s)	51, 198, 251, 398, 420, 468
GsuI	CTGGAG	1 cut(s)	581
Hin1II	CATG	2 cut(s)	286, 581
HindIII	AAGCTT	3 cut(s)	228, 299, 492
HinfI	GANTC	2 cut(s)	306, 566
HphI	GGTGA	1 cut(s)	20
Hpy188I	TCNGA	3 cut(s)	178, 313, 346
Hpy188III	TCNNGA	2 cut(s)	214, 623
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	457, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 604
HpyF3I	CTNAG	4 cut(s)	177, 312, 318, 655
HpySE526I	ACGT	2 cut(s)	457, 634
Hsp92II	CATG	2 cut(s)	286, 581
Kzo9I	GATC	1 cut(s)	499
LmnI	GCTCC	4 cut(s)	79, 129, 137, 271
LpnPI	CCDG	7 cut(s)	138, 410, 422, 426, 515, 529, 545
Lsp1109I	GCAGC	6 cut(s)	62, 209, 262, 406, 409, 454
LweI	GCATC	5 cut(s)	37, 75, 184, 384, 640
MaeI	CTAG	5 cut(s)	35, 140, 182, 480, 623
MaeII	ACGT	2 cut(s)	457, 634
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MboII	GAAGA	8 cut(s)	79, 157, 337, 386, 424, 461, 464, 545
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	2 cut(s)	134, 213
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	262, 307, 477, 556
MroXI	GAANNNNTTC	3 cut(s)	351, 519, 618
MseI	TTAA	3 cut(s)	105, 171, 645
Mva1269I	GAATGC	3 cut(s)	340, 421, 561
MwoI	GCNNNNNNNGC	2 cut(s)	259, 604
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	2 cut(s)	286, 581
NmuCI	GTSAC	1 cut(s)	233
PctI	GAATGC	3 cut(s)	340, 421, 561
PdmI	GAANNNNTTC	3 cut(s)	351, 519, 618
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	6 cut(s)	52, 199, 252, 399, 421, 469
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PshBI	ATTAAT	1 cut(s)	105
Psp124BI	GAGCTC	2 cut(s)	134, 213
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SacI	GAGCTC	2 cut(s)	134, 213
SaqAI	TTAA	3 cut(s)	105, 171, 645
SatI	GCNGC	6 cut(s)	51, 198, 251, 398, 420, 468
Sau3AI	GATC	1 cut(s)	499
SchI	GAGTC	1 cut(s)	560
SduI	GDGCHC	2 cut(s)	134, 213
SfaNI	GCATC	5 cut(s)	37, 75, 184, 384, 640
SmlI	CTYRAG	2 cut(s)	212, 254
SmoI	CTYRAG	2 cut(s)	212, 254
Sse9I	AATT	1 cut(s)	102
SspMI	CTAG	5 cut(s)	35, 140, 182, 480, 623
SstI	GAGCTC	2 cut(s)	134, 213
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	2 cut(s)	460, 637
TaqI	TCGA	1 cut(s)	447
TasI	AATT	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	3 cut(s)	105, 171, 645
Tru9I	TTAA	3 cut(s)	105, 171, 645
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	6 cut(s)	50, 197, 250, 397, 419, 467
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	425, 594
VspI	ATTAAT	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	622
XmnI	GAANNNNTTC	3 cut(s)	351, 519, 618
XspI	CTAG	5 cut(s)	35, 140, 182, 480, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.