Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002136

Physical Location & Seq

Genomic Coordinates Forward (+)

35373563 .. 35375131

Gene Structure 1569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG338900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGGAGAATGTTTATAAAGAATTAGACAATGTCAAAGCAGAGATGGAGAGGCTCAAGGCTGAGCTTCGGGTTGAGAAGGGAATTTCTGACACTTTGAAGAAATCTCACAGTGAGCAGCTGATCAAGTTTCAACAAGCTAAGCGGGAGGTTGAGAAACAAACTCAAGAGCTAAATGTCAAGCTTGATGAAATTTCTCAAGTAAGGAAAGTCTCTGAAACCCTCCAATCTTGTTTGCATGAAAAAGAATCATCTCTTAGGCATTTGAGTTCTTTGCATGAAAAGCTCCGAGCTGATCGTGAGCTGAAGCTGAAAAAACTGGAAGGAGAGAATAAAGAATTGGCATTTGCGTTTGATGAAGTTTCAGAAAAAAACAAAGAACTGGAGCAGAATGCTTGTGCCAGTAGTCGGGAGATTGAGGGCCTTAAGAGACGCTTATTGACTACAGAAAGCAAGTGTTACGAGGCAGAGCAAAAGGCCCAAGCAGCCAAAGATCTGAGGCAGAGAGATGATATAATAATGAACTTAGAGGAGGAGAATAGAAATGCTCAAGATCAATTGAAATGGAAGAAAGAGCAGTTTAAACATCTTGAAGAAGCACATAGAAGGCTACAAGATCAGTTTAAGTTGAATAAAGATGAGTGGGAGAGGGGCAAATCAGCCCTGCTTGAAGAGATCTCTTTGTTGCAGACAAGCTTGGATTCCAAAACTAGAATTCTTAAAGATGTCCAAAAACGTTTAGAGATGTGCAACCAAGCTTTAGCTCGTGAAGAAAGTATGAGGAAGTTTTTGGAGGTTGAAATATCCGAATTCAAATCACGTTATGAGGATGTCTTTGCTCAGTGCCAACAAGAAAGGTCAAAGTTTGAAAGCTTAACTGTTCAAAGGGATGAAGAGATTGCGAAGCTAAGAAACTCAATTGGAACAAGAGATACATCAACAAAAGAAATGGAAATCAGAATTGCTCACCTTGAGCAAGAGAATCTGGAATTAAGAGAATCTCTTAAAGAGCTGCAGGAATCTCGGATCAGAAATGCTGGGGCCACTTCACTCACAAAGCTGCGGAACAAGCTTAGGGGCTTGGAGCAGGCACACAGTAACTGTTCCAGAAATTTGAAAGCAAAAGAATCTGAATGGAGTTCCCAAATAGAGAAGATGAAAGGAGATATAAATGGGTATAACTCTGAGTTGAAGGGTAAAGAGAAACAAATGCAGGAAACTCAGTTGGAGCTAGAGAGCTGTCATTCTATGATCGAGGTTTTAAGTGAAGAGATTATGATACTACTTACAATCTTCAAATCAGAATTCTTGGAGGCTTTCTCCAAAAAATCTTATCCAAATGCTGAAGTGGAGCTGTGTGACGAAATGGATGACAAGATCTCTGTACTTACAAAACAGTTGGAAATGAAAGACTGTGAATTAAGAAAAGTTCTTCTTGAGCTTGAACAAGAACACGAACGAGTAGAAATATTGATGAAGAGGGTAAGGTCCTTGGAACTTACTGAACAGAGGCAGAATAACATGGAGGAGGAGCTTCAACAACATAAAAAAAATGCTCAAGGAGTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

522

Amino Acids

61.49

Weight (kDa)

5.71

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38062
fragaria_vesca	FvH4_1g19631 FvH4_1g19631 FvH4_1g19631 FvH4_2g11711 FvH4_2g11711 FvH4_2g11711
malus_domestica	MD01G1039400.v1.1 MD05G1047500.v1.1 MD10G1054400.v1.1
prunus_persica	Prupe.6G201700_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1 Prupe.8G069900_v2.0.a1
pyrus_communis	pycom01g06710 pycom05g03950
rosa_chinensis	RchiOBHm_Chr2g0111201 RchiOBHm_Chr6g0261381 RchiOBHm_Chr6g0271001
rosa_laevigata	RLG00000002078 RLG00000013754 RLG00000017873
rosa_multiflora	Rmu_co8194982.1_g000001 Rmu_co8518461.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132630 Rroxscaffold_3G00237190 Rroxscaffold_7G00197440
rosa_rugosa	Rorug02G0171500 Rorug06G0057600 Rorug07G0206900 Rorug07G0206900
rosa_samantha	Rh2AG224600 Rh2BG236400 Rh2CG227600 Rh2DG232200 Rh6AG177300 Rh6BG180700 Rh6CG176700 Rh6DG168900 Rh7BG338900 Rh7BG339000
rosa_wichuraiana	Rw2G017340 Rw6G015120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AciI	CCGC	2 cut(s)	142, 1060
AclI	AACGTT	1 cut(s)	733
AclWI	GGATC	1 cut(s)	1031
AcsI	RAATTY	6 cut(s)	81, 189, 711, 806, 1108, 1301
AcuI	CTGAAG	2 cut(s)	323, 1362
AfaI	GTAC	1 cut(s)	1383
AfiI	CCNNNNNNNGG	1 cut(s)	405
AflII	CTTAAG	1 cut(s)	422
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
Alw26I	GTCTC	2 cut(s)	214, 421
AlwI	GGATC	1 cut(s)	1031
AlwNI	CAGNNNCTG	1 cut(s)	1098
AoxI	GGCC	3 cut(s)	418, 474, 1038
ApeKI	GCWGC	4 cut(s)	115, 482, 1009, 1057
ApoI	RAATTY	6 cut(s)	81, 189, 711, 806, 1108, 1301
AspS9I	GGNCC	4 cut(s)	418, 475, 1038, 1485
AsuHPI	GGTGA	1 cut(s)	956
AvaII	GGWCC	1 cut(s)	1485
BauI	CACGAG	1 cut(s)	762
BbvI	GCAGC	4 cut(s)	127, 494, 996, 1044
BccI	CCATC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	1001, 1035
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	214, 421
BfaI	CTAG	2 cut(s)	708, 1229
BfmI	CTRYAG	2 cut(s)	441, 1010
BfrI	CTTAAG	1 cut(s)	422
BglII	AGATCT	3 cut(s)	490, 672, 1374
BisI	GCNGC	4 cut(s)	116, 483, 1010, 1058
BlpI	GCTNAGC	2 cut(s)	60, 138
BlsI	GCNGC	4 cut(s)	117, 484, 1011, 1059
Bme18I	GGWCC	1 cut(s)	1485
BmgT120I	GGNCC	4 cut(s)	418, 475, 1038, 1485
BmiI	GGNNCC	1 cut(s)	1039
BplI	GAGNNNNNCTC	2 cut(s)	1301, 1333
BpmI	CTGGAG	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	1070
Bpu1102I	GCTNAGC	2 cut(s)	60, 138
BpuEI	CTTGAG	7 cut(s)	38, 147, 180, 531, 989, 1454, 1539
BsaJI	CCNNGG	1 cut(s)	1488
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	3 cut(s)	321, 384, 399
BseDI	CCNNGG	1 cut(s)	1488
BseGI	GGATG	3 cut(s)	832, 892, 1372
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMII	CTCAG	5 cut(s)	51, 485, 851, 1173, 1232
BseNI	ACTGG	3 cut(s)	321, 384, 399
BseRI	GAGGAG	4 cut(s)	542, 545, 1538, 1541
BseXI	GCAGC	4 cut(s)	127, 494, 996, 1044
BseYI	CCCAGC	1 cut(s)	1034
BshFI	GGCC	3 cut(s)	420, 476, 1040
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	2 cut(s)	214, 421
BsmBI	CGTCTC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	3 cut(s)	420, 476, 1040
Bsp143I	GATC	9 cut(s)	120, 292, 490, 550, 613, 672, 1023, 1248, 1374
Bsp1720I	GCTNAGC	2 cut(s)	60, 138
BspACI	CCGC	2 cut(s)	142, 1060
BspANI	GGCC	3 cut(s)	420, 476, 1040
BspCNI	CTCAG	5 cut(s)	52, 486, 850, 1174, 1231
BspLI	GGNNCC	1 cut(s)	1039
BspMAI	CTGCAG	1 cut(s)	1014
BspPI	GGATC	1 cut(s)	1031
BspTI	CTTAAG	1 cut(s)	422
BsrI	ACTGG	3 cut(s)	321, 384, 399
BssECI	CCNNGG	1 cut(s)	1488
BssMI	GATC	9 cut(s)	120, 292, 490, 550, 613, 672, 1023, 1248, 1374
BssSI	CACGAG	1 cut(s)	762
BssT1I	CCWWGG	1 cut(s)	1488
Bst2BI	CACGAG	1 cut(s)	762
Bst4CI	ACNGT	6 cut(s)	110, 877, 1094, 1100, 1395, 1412
Bst6I	CTCTTC	4 cut(s)	663, 885, 1260, 1469
BstAFI	CTTAAG	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	1086
BstF5I	GGATG	3 cut(s)	832, 892, 1372
BstKTI	GATC	9 cut(s)	123, 295, 493, 553, 616, 675, 1026, 1251, 1377
BstMAI	GTCTC	2 cut(s)	214, 421
BstMBI	GATC	9 cut(s)	120, 292, 490, 550, 613, 672, 1023, 1248, 1374
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 482, 1066
BstSFI	CTRYAG	2 cut(s)	441, 1010
BstV1I	GCAGC	4 cut(s)	127, 494, 996, 1044
BstX2I	RGATCY	3 cut(s)	490, 672, 1374
BstYI	RGATCY	3 cut(s)	490, 672, 1374
BsuRI	GGCC	3 cut(s)	420, 476, 1040
BtsCI	GGATG	3 cut(s)	832, 892, 1372
BtsIMutI	CAGTG	2 cut(s)	115, 845
Cac8I	GCNNGC	1 cut(s)	1086
CaiI	CAGNNNCTG	1 cut(s)	1098
Cfr13I	GGNCC	4 cut(s)	418, 475, 1038, 1485
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	1382
CviAII	CATG	3 cut(s)	236, 275, 1519
CviQI	GTAC	1 cut(s)	1382
DpnI	GATC	9 cut(s)	122, 294, 492, 552, 615, 674, 1025, 1250, 1376
DpnII	GATC	9 cut(s)	120, 292, 490, 550, 613, 672, 1023, 1248, 1374
DraI	TTTAAA	1 cut(s)	580
Eam1104I	CTCTTC	4 cut(s)	663, 885, 1260, 1469
EarI	CTCTTC	4 cut(s)	663, 885, 1260, 1469
Eco130I	CCWWGG	1 cut(s)	1488
Eco47I	GGWCC	1 cut(s)	1485
Eco57I	CTGAAG	2 cut(s)	323, 1362
EcoO109I	RGGNCCY	2 cut(s)	418, 1485
EcoRI	GAATTC	3 cut(s)	711, 806, 1301
EcoT14I	CCWWGG	1 cut(s)	1488
ErhI	CCWWGG	1 cut(s)	1488
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	3 cut(s)	239, 278, 1522
FalI	AAGNNNNNCTT	4 cut(s)	416, 448, 1416, 1448
FatI	CATG	3 cut(s)	235, 274, 1518
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	4 cut(s)	116, 483, 1010, 1058
FokI	GGATG	3 cut(s)	839, 899, 1379
Fsp4HI	GCNGC	4 cut(s)	116, 483, 1010, 1058
FspBI	CTAG	2 cut(s)	708, 1229
GluI	GCNGC	4 cut(s)	116, 483, 1010, 1058
GsaI	CCCAGC	1 cut(s)	1038
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	3 cut(s)	420, 476, 1040
HgaI	GACGC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	239, 278, 1522
HindIII	AAGCTT	5 cut(s)	179, 691, 753, 868, 1067
HinfI	GANTC	7 cut(s)	245, 698, 979, 995, 1016, 1124, 1560
HphI	GGTGA	1 cut(s)	956
Hpy188III	TCNNGA	9 cut(s)	164, 296, 407, 548, 587, 764, 983, 1104, 1433
HpyAV	CCTTC	4 cut(s)	70, 314, 597, 1183
HpyCH4III	ACNGT	6 cut(s)	110, 877, 1094, 1100, 1395, 1412
HpyCH4IV	ACGT	2 cut(s)	733, 817
HpyCH4V	TGCA	6 cut(s)	235, 274, 685, 747, 1012, 1210
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 482, 1066
HpySE526I	ACGT	2 cut(s)	733, 817
Hsp92II	CATG	3 cut(s)	239, 278, 1522
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	9 cut(s)	120, 292, 490, 550, 613, 672, 1023, 1248, 1374
LmnI	GCTCC	6 cut(s)	288, 382, 1081, 1225, 1348, 1528
Lsp1109I	GCAGC	4 cut(s)	127, 494, 996, 1044
MaeI	CTAG	2 cut(s)	708, 1229
MaeII	ACGT	2 cut(s)	733, 817
MaeIII	GTNAC	3 cut(s)	455, 1094, 1355
MalI	GATC	9 cut(s)	122, 294, 492, 552, 615, 674, 1025, 1250, 1376
MboI	GATC	9 cut(s)	120, 292, 490, 550, 613, 672, 1023, 1248, 1374
MfeI	CAATTG	2 cut(s)	554, 915
MflI	RGATCY	3 cut(s)	490, 672, 1374
MlyI	GAGTC	1 cut(s)	1569
MmeI	TCCRAC	2 cut(s)	1203, 1377
MseI	TTAA	9 cut(s)	423, 579, 621, 717, 872, 989, 1002, 1259, 1418
MspA1I	CMGCKG	1 cut(s)	118
MspCI	CTTAAG	1 cut(s)	422
MssI	GTTTAAAC	1 cut(s)	580
MunI	CAATTG	2 cut(s)	554, 915
Mva1269I	GAATGC	1 cut(s)	394
MwoI	GCNNNNNNNGC	3 cut(s)	280, 482, 1066
NdeII	GATC	9 cut(s)	120, 292, 490, 550, 613, 672, 1023, 1248, 1374
NlaIII	CATG	3 cut(s)	239, 278, 1522
NlaIV	GGNNCC	1 cut(s)	1039
NmuCI	GTSAC	1 cut(s)	1355
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	6 cut(s)	245, 698, 979, 995, 1016, 1124
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	4 cut(s)	117, 484, 1011, 1059
PleI	GAGTC	1 cut(s)	1568
PmeI	GTTTAAAC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	1568
PpuMI	RGGWCCY	1 cut(s)	1485
PsiI	TTATAA	1 cut(s)	15
Psp1406I	AACGTT	1 cut(s)	733
Psp5II	RGGWCCY	1 cut(s)	1485
PspFI	CCCAGC	1 cut(s)	1034
PspN4I	GGNNCC	1 cut(s)	1039
PspPI	GGNCC	4 cut(s)	418, 475, 1038, 1485
PspPPI	RGGWCCY	1 cut(s)	1485
PsrI	GAACNNNNNNTAC	2 cut(s)	913, 945
PstI	CTGCAG	1 cut(s)	1014
PstNI	CAGNNNCTG	1 cut(s)	1098
PsuI	RGATCY	3 cut(s)	490, 672, 1374
PsyI	GACNNNGTC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	1383
RsaNI	GTAC	1 cut(s)	1382
SaqAI	TTAA	9 cut(s)	423, 579, 621, 717, 872, 989, 1002, 1259, 1418
SatI	GCNGC	4 cut(s)	116, 483, 1010, 1058
Sau3AI	GATC	9 cut(s)	120, 292, 490, 550, 613, 672, 1023, 1248, 1374
Sau96I	GGNCC	4 cut(s)	418, 475, 1038, 1485
SchI	GAGTC	1 cut(s)	1569
SfcI	CTRYAG	2 cut(s)	441, 1010
SinI	GGWCC	1 cut(s)	1485
SmlI	CTYRAG	8 cut(s)	53, 162, 195, 422, 546, 968, 1433, 1554
SmoI	CTYRAG	8 cut(s)	53, 162, 195, 422, 546, 968, 1433, 1554
SsiI	CCGC	2 cut(s)	142, 1060
SspI	AATATT	1 cut(s)	1467
SspMI	CTAG	2 cut(s)	708, 1229
StyI	CCWWGG	1 cut(s)	1488
TaaI	ACNGT	6 cut(s)	110, 877, 1094, 1100, 1395, 1412
TaiI	ACGT	2 cut(s)	736, 820
TaqI	TCGA	1 cut(s)	1251
TatI	WGTACW	1 cut(s)	1381
TfiI	GAWTC	6 cut(s)	245, 698, 979, 995, 1016, 1124
Tru1I	TTAA	9 cut(s)	423, 579, 621, 717, 872, 989, 1002, 1259, 1418
Tru9I	TTAA	9 cut(s)	423, 579, 621, 717, 872, 989, 1002, 1259, 1418
TscAI	CASTG	2 cut(s)	115, 845
TseFI	GTSAC	1 cut(s)	1355
TseI	GCWGC	4 cut(s)	115, 482, 1009, 1057
Tsp45I	GTSAC	1 cut(s)	1355
TspDTI	ATGAA	9 cut(s)	201, 252, 291, 369, 533, 903, 1169, 1418, 1487
TspRI	CASTG	2 cut(s)	115, 845
Tth111I	GACNNNGTC	1 cut(s)	29
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	1485
XapI	RAATTY	6 cut(s)	81, 189, 711, 806, 1108, 1301
XspI	CTAG	2 cut(s)	708, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.